BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961041|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_A18, 5'
         (688 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4FWR6|GATE_METM5 Glutamyl-tRNA(Gln) amidotransferase subunit...    33   1.4  
sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1 O...    33   1.9  
sp|Q6LXT2|GATE_METMP Glutamyl-tRNA(Gln) amidotransferase subunit...    33   1.9  
sp|A6VGK4|GATE_METM7 Glutamyl-tRNA(Gln) amidotransferase subunit...    33   1.9  
sp|Q8N377|YJ004_HUMAN Putative uncharacterized protein LOC387726...    32   2.4  
sp|O14924|RGS12_HUMAN Regulator of G-protein signaling 12 OS=Hom...    31   5.4  
sp|Q2IHD1|RLMN2_ANADE Ribosomal RNA large subunit methyltransfer...    31   7.1  
sp|Q5Z980|EXLA4_ORYSJ Expansin-like A4 OS=Oryza sativa subsp. ja...    31   7.1  
sp|P84444|CC21B_MOUSE C-C motif chemokine 21b OS=Mus musculus GN...    31   7.1  
sp|O64474|AHM2_ARATH Putative cadmium/zinc-transporting ATPase 2...    31   7.1  

>sp|A4FWR6|GATE_METM5 Glutamyl-tRNA(Gln) amidotransferase subunit E
           OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
           GN=gatE PE=3 SV=1
          Length = 631

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
 Frame = +3

Query: 270 EQELEGPQLRSALETHQPTCMV*SMVSTKRPLGCSCFVGSRGREPSLHFW*LATVLRPSQ 449
           + + E   L+  LE HQ        ++TKR L C+C    R  EP      +  VLRPSQ
Sbjct: 2   DHDYEKLGLKVGLEIHQ-------QLNTKRKLFCNCPTKIRDDEPHGE---IERVLRPSQ 51

Query: 450 GDSEH----PLTWHEGGAKHVSGYYRGYTC 527
            +  H     L   +   K +  YY   TC
Sbjct: 52  SEMGHVDKAALLESKKEKKFIYQYYNDSTC 81


>sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1
           OS=Rattus norvegicus GN=Mdc1 PE=2 SV=2
          Length = 1279

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 6   DSTSNQPGPKCPGKSSPYNVLGEG*GSSTQHSKAQSP 116
           D   + PGP  PG SSP+     G GS T  S+ Q P
Sbjct: 199 DEEGSSPGPSVPGPSSPF-----GLGSDTDESQGQQP 230


>sp|Q6LXT2|GATE_METMP Glutamyl-tRNA(Gln) amidotransferase subunit E
           OS=Methanococcus maripaludis GN=gatE PE=3 SV=1
          Length = 631

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +3

Query: 294 LRSALETHQPTCMV*SMVSTKRPLGCSCFVGSRGREPSLHFW*LATVLRPSQGDSEH--- 464
           L+  LE HQ        ++TKR L C+C    R  EP      +  VLRPSQ +  H   
Sbjct: 10  LKVGLEIHQ-------QLNTKRKLFCNCPTKIRDDEPHGE---IERVLRPSQSEMGHVDK 59

Query: 465 -PLTWHEGGAKHVSGYYRGYTC 527
             L   +   K +  YY   TC
Sbjct: 60  AALLESKKEKKFIYQYYNDTTC 81


>sp|A6VGK4|GATE_METM7 Glutamyl-tRNA(Gln) amidotransferase subunit E
           OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
           GN=gatE PE=3 SV=1
          Length = 631

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +3

Query: 294 LRSALETHQPTCMV*SMVSTKRPLGCSCFVGSRGREPSLHFW*LATVLRPSQGDSEH--- 464
           L+  LE HQ        ++TKR L C+C    R  EP      +  VLRPSQ +  H   
Sbjct: 10  LKVGLEIHQ-------QLNTKRKLFCNCPTKIRDDEPHGE---IERVLRPSQSEMGHVDK 59

Query: 465 -PLTWHEGGAKHVSGYYRGYTC 527
             L   +   K +  YY   TC
Sbjct: 60  AALLESKKEKKFIYQYYNDTTC 81


>sp|Q8N377|YJ004_HUMAN Putative uncharacterized protein LOC387726
           OS=Homo sapiens PE=5 SV=2
          Length = 158

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 33/122 (27%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
 Frame = -2

Query: 426 PVTKSASWALCHGTPQNMNNQVASLC*PCSTPCMWAGASPRHSSVAVLPTPAQADSAHLY 247
           P T ++S +    TP + ++        CST    A  +P + S A  PTPA + SA   
Sbjct: 22  PPTPASSSSAAPPTPASSSSAAPPTPANCSTA---APPTPANCSTAAPPTPASSGSAAPP 78

Query: 246 KNPPDGW---APRVARMRDSSTNPM*QQLLPGLLSRKKSSDHKRPRKGSALCCAGSMIPS 76
              PD W   AP                 LPGLL+R      + P      C   + +P 
Sbjct: 79  TPAPDHWWMEAP--------------HHWLPGLLAR--CGSRQLPSSVGLACFGTAAVPR 122

Query: 75  PP 70
            P
Sbjct: 123 KP 124


>sp|O14924|RGS12_HUMAN Regulator of G-protein signaling 12 OS=Homo
           sapiens GN=RGS12 PE=1 SV=1
          Length = 1447

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
 Frame = +3

Query: 81  GSSTQHSKAQSPSWDACGQRTSFGRGALE-GVVATSDSC*SPSYGRPLEPIHQVDFYRD- 254
           GSS++H    S +WD  G     GRGA   G   T   C  P    P E  HQ D + D 
Sbjct: 445 GSSSRHGPGGS-AWDGVG-----GRGAQPWGAPWTGPFCPDPEGSPPFEAAHQTDRFWDL 498

Query: 255 ----APSRPEQELEGPQLRSAL 308
                P+ P  E+    LRS++
Sbjct: 499 NKHLGPASP-VEVPPASLRSSV 519


>sp|Q2IHD1|RLMN2_ANADE Ribosomal RNA large subunit methyltransferase
           N 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C)
           GN=rlmN2 PE=3 SV=2
          Length = 338

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
 Frame = +3

Query: 153 RGALEGVVATSDSC*SPSYGRPLEPIHQVDFYRDAPSRPEQELEGPQLRSAL-ETHQPTC 329
           R     V+   D+  +P   R LE +   D +R         L    +R  L +TH   C
Sbjct: 41  RNVRRSVLDEVDALATPGELRLLESVDAKDGFRKYLFELPDGLRVETVRIPLYDTHHVVC 100

Query: 330 MV*SMVSTKRPLGCS-CFVGSRGREPSLHFW*LATVLRPSQGDSEHPLT 473
           +          LGC+ C     G + SL  W + + L   + DSE P+T
Sbjct: 101 L---SSQAGCALGCAFCATAKLGLDRSLRSWEMVSQLLAVRADSERPIT 146


>sp|Q5Z980|EXLA4_ORYSJ Expansin-like A4 OS=Oryza sativa subsp.
           japonica GN=EXLA4 PE=2 SV=1
          Length = 313

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = -2

Query: 330 CMWAGASPRHSSVAVLPTPAQADSAHL 250
           C W   +PRHS+V++LPTP  A  AHL
Sbjct: 35  CDWC--TPRHSTVSILPTPTHA--AHL 57


>sp|P84444|CC21B_MOUSE C-C motif chemokine 21b OS=Mus musculus
           GN=Ccl21b PE=1 SV=1
          Length = 133

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = -2

Query: 291 AVLPTPAQADSAHLYKNPPDGWAPRVARMRDSSTNPM*QQLLPGLLSRKKSSDHKRPRKG 112
           A+L +P +     L  NP +GW   + R  D    P  Q   PG    + +S   +  KG
Sbjct: 61  AILFSPRKHSKPELCANPEEGWVQNLMRRLDQPPAPGKQS--PGCRKNRGTSKSGKKGKG 118

Query: 111 SALC 100
           S  C
Sbjct: 119 SKGC 122


>sp|O64474|AHM2_ARATH Putative cadmium/zinc-transporting ATPase 2
            OS=Arabidopsis thaliana GN=HMA4 PE=2 SV=2
          Length = 1172

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
 Frame = -1

Query: 481  SCHVSGCSESPWEGLKTVASH-----QKCKLGSLPRDPTK----HEQPSGLFVLTMLYTM 329
            SCH  GCS+    G  T+AS      Q C  G    + T      E+   + V      M
Sbjct: 954  SCHEKGCSDEKQTGEITLASEEETDDQDCSSGCCVNEGTVKQSFDEKKHSVLVEKEGLDM 1013

Query: 328  HVGWCVSKALLSCG 287
              G+C    L+ CG
Sbjct: 1014 ETGFCCDAKLVCCG 1027

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961041|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_A18, 5'
         (688 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SAX7|A9SAX7_PHYPA Predicted protein OS=Physcomitrella paten...    51   6e-05
tr|A9TJ48|A9TJ48_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.002
tr|A9RCP1|A9RCP1_PHYPA Predicted protein OS=Physcomitrella paten...    33   0.011
tr|A9SSE4|A9SSE4_PHYPA Predicted protein OS=Physcomitrella paten...    34   0.012
tr|B6KVR2|B6KVR2_TOXGO Putative uncharacterized protein OS=Toxop...    37   1.5  
tr|A7RYG5|A7RYG5_NEMVE Predicted protein (Fragment) OS=Nematoste...    36   2.0  
tr|A9SLK5|A9SLK5_PHYPA Intraflagellar transport protein 80 (Frag...    35   3.4  
tr|B6KJK0|B6KJK0_TOXGO Putative uncharacterized protein OS=Toxop...    35   3.4  
tr|A9HWN1|A9HWN1_BORPD Putative membrane protein OS=Bordetella p...    35   5.8  
tr|Q2VY10|Q2VY10_SOLLC CONSTANS 1 OS=Solanum lycopersicum GN=CO1...    34   7.6  
tr|Q6JSK2|Q6JSK2_9SOLN Verticillium wilt disease resistance prot...    34   7.7  
tr|Q131S5|Q131S5_RHOPS Putative uncharacterized protein OS=Rhodo...    34   10.0 
tr|Q07SV8|Q07SV8_RHOP5 Putative uncharacterized protein OS=Rhodo...    34   10.0 

>tr|A9SAX7|A9SAX7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_76902 PE=4 SV=1
          Length = 442

 Score = 51.2 bits (121), Expect = 6e-05
 Identities = 33/80 (41%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +1

Query: 10  RHQISQGQSV-LASHHLTMFLGRARDHRPSTAKRRALPGTLVVRGLLSGEEPWKELLLHR 186
           RH    GQS     HH T    R   +  S+   ++L   L+VRGL  G EPWK LL HR
Sbjct: 262 RHHKWSGQSKGQMGHHYTANKPRGTKNLRSSNPNKSLLAKLIVRGLTPGLEPWKILLRHR 321

Query: 187 IR-ARVPHTGDPWSPSIRWI 243
           +   R  H G  W PS  WI
Sbjct: 322 LETTRAKHYG-TWHPSAHWI 340


>tr|A9TJ48|A9TJ48_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_93427 PE=4 SV=1
          Length = 170

 Score = 37.0 bits (84), Expect(2) = 0.002
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +1

Query: 91  PSTAKRRALPGTLVVRGLLSGEEPWKELLLHRIRA 195
           P+T K RAL   L+ RGL  G EPWK ++ HRI A
Sbjct: 38  PAT-KARALLAKLIARGLTPGLEPWKIMVRHRIEA 71



 Score = 28.5 bits (62), Expect(2) = 0.002
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 5   GLDIKSARAKVSWQVITLQCSWGGLGIIDPAQQS 106
           G+     RAKV W  I    + GGL II PA ++
Sbjct: 9   GITSGKVRAKVKWDTIIQLMTQGGLKIIGPATKA 42


>tr|A9RCP1|A9RCP1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64171 PE=4 SV=1
          Length = 985

 Score = 33.5 bits (75), Expect(2) = 0.011
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +1

Query: 109 RALPGTLVVRGLLSGEEPWKELLLHRIRARVPHTGDPWSPSIRWI 243
           +AL   LVV+ L  G EPWK    H +    P     W   I WI
Sbjct: 814 QALMTKLVVQSLQPGYEPWKVFARHNLGCTKPTGAGRWPRYIHWI 858



 Score = 28.9 bits (63), Expect(2) = 0.011
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 17  KSARAKVSWQVITLQCSWGGLGIIDPAQQS 106
           K  RAK+SW ++    + GG+ I+DP  Q+
Sbjct: 784 KKTRAKLSWTLLIQTVASGGVKILDPKLQT 813


>tr|A9SSE4|A9SSE4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_230851 PE=4 SV=1
          Length = 209

 Score = 34.3 bits (77), Expect(2) = 0.012
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +1

Query: 112 ALPGTLVVRGLLSGEEPWKELLLHRIRARVPHTG 213
           AL   L+VR LL G  PWK L+ HR+R  V   G
Sbjct: 65  ALMAKLLVRSLLPGFVPWKTLMQHRLRGLVGDLG 98



 Score = 28.1 bits (61), Expect(2) = 0.012
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 17  KSARAKVSWQVITLQCSWGGLGIIDPAQQ 103
           +  RAKV+W  + L    GG+ ++DP  Q
Sbjct: 34  RKCRAKVAWDSLILPHKLGGIKLLDPETQ 62


>tr|B6KVR2|B6KVR2_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_075400 PE=4 SV=1
          Length = 667

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 2/111 (1%)
 Frame = -2

Query: 426 PVTKSASWALCHGTPQNMNNQVASLC*PCSTPCMWAGASPRHSSVAVLPTPAQADSAHLY 247
           P  +     L   +P     Q+ S C P   P    G SPR        TPA A   +  
Sbjct: 288 PFHEQLEMRLVFSSPALQALQLLSFCLPGDDPAPEGGGSPRRRE-----TPAHASERNQE 342

Query: 246 --KNPPDGWAPRVARMRDSSTNPM*QQLLPGLLSRKKSSDHKRPRKGSALC 100
             ++ P G  P        S  P    LLP +  R+ S  HKR +KG + C
Sbjct: 343 GERDTPRGLLPTFL-----SAPPPQLLLLPTVSVRRTSRGHKREKKGESRC 388


>tr|A7RYG5|A7RYG5_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g97756 PE=4 SV=1
          Length = 2534

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
 Frame = -1

Query: 499 TCFAPPSCHVSGCSESPWEGLKTVASHQKC----KLGSLPRDPTKHEQPSGLFVLTMLYT 332
           +C   P+C    CS +P      V    KC      G+ P   + H+         + + 
Sbjct: 526 SCKLDPAC--GWCSGNPASKCFAVQESSKCLSGWSTGTCPGSCSVHDTCKSCLAWGVNHV 583

Query: 331 MHVGWCVSKALLSCGPSNSCSGRLGASL*KST*WMGSKGR 212
            H GWCV  +L  C P++S SG   A   K   W G+  +
Sbjct: 584 PHCGWCVQDSL--CYPTSSPSGACKAPFTKG--WWGTSSQ 619


>tr|A9SLK5|A9SLK5_PHYPA Intraflagellar transport protein 80
           (Fragment) OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_131844 PE=4 SV=1
          Length = 658

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 307 WRRTSPHAWCRAWLAQRGHLVVHVLWGPVAESPACTFGDWLLF*DLPKEIQSIHLRGMRG 486
           W R+  H   R+ LAQ GH V  V WGP ++    + G  L    +    + +H  G  G
Sbjct: 47  WSRSGMH---RSTLAQNGHAVYAVAWGPESDQVVFSSGSNLFIKPIQSSSKLLHWEGHEG 103

Query: 487 V 489
           +
Sbjct: 104 L 104


>tr|B6KJK0|B6KJK0_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_031220 PE=4 SV=1
          Length = 451

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = -2

Query: 321 AGASPRHSSVAVLPTPAQADSAHLYKNPPDGWAPRVARMRDSSTNPM*QQLLPGLLSRKK 142
           +G SPRHS V+ +   A +++ H   +  DG AP  A  R  S +         L  R +
Sbjct: 336 SGLSPRHSGVSPVAVQASSENLHNQTSGADGCAPSSAGWRPFSGSRFAMPARYQLAKRSE 395

Query: 141 SSDHKRPRK 115
           +S+ ++P K
Sbjct: 396 TSETEKPGK 404


>tr|A9HWN1|A9HWN1_BORPD Putative membrane protein OS=Bordetella
           petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
           GN=Bpet0187 PE=4 SV=1
          Length = 421

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 23/47 (48%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 88  RPSTAKRRALPGTLVVRGLLSGEEPWKELLLH--RIRARVPHTGDPW 222
           R   A  R LP  LV   LL    PW +LL H  R RAR P TG PW
Sbjct: 114 RQGNAYLRWLPW-LVALWLLMALVPWFDLLTHSERFRARYPLTGGPW 159


>tr|Q2VY10|Q2VY10_SOLLC CONSTANS 1 OS=Solanum lycopersicum GN=CO1
           PE=2 SV=1
          Length = 391

 Score = 34.3 bits (77), Expect = 7.6
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
 Frame = -2

Query: 306 RHSSVAVLPTPAQADSAHL-------YKNPPDGWAPRVARMRDSSTNPM*QQLLPGLLSR 148
           +  S+ +  TP Q  S HL       Y N   G+    +     S + M   ++P     
Sbjct: 230 QRKSLILYQTPQQQQSHHLNFQLGMEYDNSNTGYGYPASLSHSVSISSMDVSVVPESAQS 289

Query: 147 KKSSDHKRPRKGSALCCAGSMIPSPPQ 67
           + S+ H RP KG+    +G  I  PPQ
Sbjct: 290 ETSNSHPRPPKGTIDLFSGPPIQIPPQ 316