DK961042
Clone id TST39A01NGRL0009_A19
Library
Length 597
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_A19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
ATGAGTCGCTTGGCAACCGTTGACCTGTACCTCAAAGCAGATGCACTTCGCGTTGCACTG
GATCATCTCATCAAGCTGCGGCCGGTTTGGCATGTGCTTGTGTACAACCCCTCTGCGTGA
GAATTCATCACCTTTCACGCGTAGCCCTTGTACAGCCACACTGGGCGTGAGCGCCATCTG
CTATTCCTCAAGGAGTTGCAAGCACGTAAGATGCGCACCTCGCTCGACGGCTCCCGACGA
AGATAAAATGACCAGACGATCTCATATTGATTTTCCCATTGAATGCAAGAGAGCCCGAGC
TGGGAGACTGCCAGATAGTTTTCTGCAGCTCAGTCCAATGAAAACTCCACTCCCTCAGCC
TCCTACAACTGATCCTCCAGATGAAGATGAAGAGGAGGAGAAAAAAGAAGAATAACAGAA
GCCAGAGGAGGAGCCTGATACACCACCTAAAGAGACATGATTCTTACTGGTCTTCTCAGT
AATGGTGTTTTGAGTGAGCTGGGTGGTGTGCTTCAAAGAGGTGACTGATCATTTCGAAGC
TAACGGGGTGCAAGAATTGCCAAACCTGGTTTCTGCTCTCACACTCTTCATCAACTT
■■Homology search results ■■ -
sp_hit_id P26010
Definition sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens
Align length 64
Score (bit) 32.3
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961042|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_A19, 5'
(597 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE... 32 1.9
sp|A4YSR9|Y3147_BRASO UPF0178 protein BRADO3147 OS=Bradyrhizobiu... 32 3.2
sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 OS=Mus ... 31 5.4
sp|P29025|CHI1_RHINI Chitinase 1 OS=Rhizopus niveus GN=CHI1 PE=3... 31 5.4
sp|Q83JD2|YRDB_SHIFL Uncharacterized protein yrdB OS=Shigella fl... 30 9.3
sp|P45795|YRDB_ECOLI Uncharacterized protein yrdB OS=Escherichia... 30 9.3

>sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1
SV=1
Length = 798

Score = 32.3 bits (72), Expect = 1.9
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +2

Query: 26 CTSKQMHFALHWIISSSCGRFGMCLCTTPLRENSSPFTRSPCTATLGVSAICYSSRSCKH 205
C+ Q H + S + GR G LC + E SSP S C A G +C C+
Sbjct: 488 CSDGQGHLQCG-VCSCAPGRLGR-LCECSVAELSSPDLESGCRAPNGTGPLCSGKGHCQC 545

Query: 206 VRCA 217
RC+
Sbjct: 546 GRCS 549


>sp|A4YSR9|Y3147_BRASO UPF0178 protein BRADO3147 OS=Bradyrhizobium
sp. (strain ORS278) GN=BRADO3147 PE=3 SV=1
Length = 164

Score = 31.6 bits (70), Expect = 3.2
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +2

Query: 65 ISSSCGRFGMCLCTTPLRENSSPFTRSPCTATLGVSAICYSSRSCKHVRCAPRSTAPDED 244
++S C + G + + N PFT TL V + RS V PRS P D
Sbjct: 83 LASRCVKAGSAV----IAPNGKPFTEESMGMTLAVRNLMTDLRSSGEVTGGPRSFTP-RD 137

Query: 245 KMTRRSHIDFPI-ECKRARAGRL 310
+ T S +D I +R RA R+
Sbjct: 138 RSTFLSTLDTTIRRVQRQRAARI 160


>sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 OS=Mus
musculus GN=Fras1 PE=2 SV=1
Length = 4010

Score = 30.8 bits (68), Expect = 5.4
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Frame = +2

Query: 5 VAWQPLTCTSKQMHFA---LHWIISSSCGRFGMCLCTTP--------LRENSSPFTRSPC 151
V +P+ C + + F + WI + C C TP + E+ + + +PC
Sbjct: 55 VICKPVVCKNPRCAFEKGEVLWIAPNQC--CPQCAPRTPGSCHHEGKIHEHGTEWASAPC 112

Query: 152 TATLGVSAICYSSRSCKHVRCAPRSTAPDE 241
T V + + C H +C P S P E
Sbjct: 113 T----VCSCTHGEVRCSHQQCTPLSCGPQE 138


>sp|P29025|CHI1_RHINI Chitinase 1 OS=Rhizopus niveus GN=CHI1 PE=3
SV=1
Length = 493

Score = 30.8 bits (68), Expect = 5.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2

Query: 44 HFALHWIISSSCGRFGMCLCTTPLRENSSPFTRSPCTATLGVSAICYSSRSC 199
H L+ I+ S G TP SS T S TA+ + + Y+ RSC
Sbjct: 301 HSELYSIVHGSSAALGQAARKTPFPNTSSITTTSLATASSALFPLLYAGRSC 352


>sp|Q83JD2|YRDB_SHIFL Uncharacterized protein yrdB OS=Shigella
flexneri GN=yrdB PE=4 SV=1
Length = 85

Score = 30.0 bits (66), Expect = 9.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1

Query: 90 PNRPQLDEMIQCNAKCICFEVQVNGCQAT 4
P+R + DE N KC+CF VNG Q T
Sbjct: 8 PDREEWDE----NKKCVCFPALVNGMQLT 32


>sp|P45795|YRDB_ECOLI Uncharacterized protein yrdB OS=Escherichia
coli (strain K12) GN=yrdB PE=4 SV=1
Length = 85

Score = 30.0 bits (66), Expect = 9.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1

Query: 90 PNRPQLDEMIQCNAKCICFEVQVNGCQAT 4
P+R + DE N KC+CF VNG Q T
Sbjct: 8 PDREEWDE----NKKCVCFPALVNGMQLT 32


tr_hit_id A9PBZ2
Definition tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Populus trichocarpa
Align length 83
Score (bit) 63.5
E-value 9.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961042|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_A19, 5'
(597 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Popul... 64 9e-09
tr|A7P7B9|A7P7B9_VITVI Chromosome chr9 scaffold_7, whole genome ... 61 6e-08
tr|A9RTT9|A9RTT9_PHYPA Predicted protein OS=Physcomitrella paten... 60 1e-07
tr|A9RFX0|A9RFX0_PHYPA Predicted protein OS=Physcomitrella paten... 60 1e-07
tr|A7PEQ7|A7PEQ7_VITVI Chromosome chr11 scaffold_13, whole genom... 59 2e-07
tr|B8AFF4|B8AFF4_ORYSI Putative uncharacterized protein OS=Oryza... 59 3e-07
tr|B6SN44|B6SN44_MAIZE Putative uncharacterized protein OS=Zea m... 59 3e-07
tr|Q9SII4|Q9SII4_ARATH Expressed protein (Putative uncharacteriz... 58 4e-07
tr|Q6K5Y3|Q6K5Y3_ORYSJ Os02g0614200 protein OS=Oryza sativa subs... 58 4e-07
tr|B6UA24|B6UA24_MAIZE Putative uncharacterized protein OS=Zea m... 58 4e-07
tr|B6U119|B6U119_MAIZE Putative uncharacterized protein OS=Zea m... 58 4e-07
tr|B6TEN8|B6TEN8_MAIZE Putative uncharacterized protein OS=Zea m... 58 4e-07
tr|Q9LV56|Q9LV56_ARATH Gb|AAD25142.1 (Putative uncharacterized p... 56 1e-06
tr|Q8GWM3|Q8GWM3_ARATH Putative uncharacterized protein At3g2450... 55 2e-06
tr|Q8LE64|Q8LE64_ARATH Putative uncharacterized protein OS=Arabi... 54 7e-06
tr|Q6GZT3|Q6GZT3_FRG3V Putative uncharacterized protein OS=Frog ... 35 2.5
tr|A3A914|A3A914_ORYSJ Putative uncharacterized protein OS=Oryza... 34 5.6

>tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 147

Score = 63.5 bits (153), Expect = 9e-09
Identities = 37/83 (44%), Positives = 46/83 (55%)
Frame = +2

Query: 104 TTPLRENSSPFTRSPCTATLGVSAICYSSRSCKHVRCAPRSTAPDEDKMTRRSHIDFPIE 283
T +SS F C L +C SR K + S APDE+K+TRRS +DFPIE
Sbjct: 26 TASASSSSSCFKSQFCGWFLAGRLVCSGSRKQKK-QMQVVSMAPDEEKLTRRSPLDFPIE 84

Query: 284 CKRARAGRLPDSFLQLSPMKTPL 352
+R + G PD F Q SPMKTP+
Sbjct: 85 WERPKPGSRPDIFPQFSPMKTPI 107


>tr|A7P7B9|A7P7B9_VITVI Chromosome chr9 scaffold_7, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00034399001
PE=4 SV=1
Length = 84

Score = 60.8 bits (146), Expect = 6e-08
Identities = 28/41 (68%), Positives = 33/41 (80%)
Frame = +2

Query: 230 APDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
AP+E+KMTRRS +DFPIE +R + GR PD F Q SPMKTPL
Sbjct: 2 APEEEKMTRRSPLDFPIEWERPKPGRRPDIFPQFSPMKTPL 42


>tr|A9RTT9|A9RTT9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_56105 PE=4 SV=1
Length = 78

Score = 59.7 bits (143), Expect = 1e-07
Identities = 29/41 (70%), Positives = 31/41 (75%)
Frame = +2

Query: 230 APDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
APDE+KMTRRS +DFPIE R R GR D F Q SPMKTPL
Sbjct: 2 APDEEKMTRRSPLDFPIEWDRPRPGRRADIFPQFSPMKTPL 42


>tr|A9RFX0|A9RFX0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_65594 PE=4 SV=1
Length = 79

Score = 59.7 bits (143), Expect = 1e-07
Identities = 29/41 (70%), Positives = 31/41 (75%)
Frame = +2

Query: 230 APDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
APDE+KMTRRS +DFPIE R R GR D F Q SPMKTPL
Sbjct: 2 APDEEKMTRRSPLDFPIEWDRPRPGRRADIFPQFSPMKTPL 42


>tr|A7PEQ7|A7PEQ7_VITVI Chromosome chr11 scaffold_13, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00016751001
PE=4 SV=1
Length = 147

Score = 59.3 bits (142), Expect = 2e-07
Identities = 27/43 (62%), Positives = 33/43 (76%)
Frame = +2

Query: 224 STAPDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
S AP+E+K+TRR+ +DFPIE R + GR PD F Q SPMKTPL
Sbjct: 64 SMAPEEEKLTRRNPLDFPIEWNRPKPGRRPDIFPQFSPMKTPL 106


>tr|B8AFF4|B8AFF4_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_08059 PE=4 SV=1
Length = 144

Score = 58.5 bits (140), Expect = 3e-07
Identities = 30/76 (39%), Positives = 44/76 (57%)
Frame = +2

Query: 125 SSPFTRSPCTATLGVSAICYSSRSCKHVRCAPRSTAPDEDKMTRRSHIDFPIECKRARAG 304
++P A++ ++ SR + APDE+K+TRRS +DFPIE ++ + G
Sbjct: 22 AAPGALGASVASVSLARAAVPSRRRRRWDALVVCAAPDEEKITRRSPLDFPIEWEKPKPG 81

Query: 305 RLPDSFLQLSPMKTPL 352
R PD F + SPMKTPL
Sbjct: 82 RRPDIFPKFSPMKTPL 97


>tr|B6SN44|B6SN44_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 141

Score = 58.5 bits (140), Expect = 3e-07
Identities = 37/96 (38%), Positives = 49/96 (51%)
Frame = +2

Query: 65 ISSSCGRFGMCLCTTPLRENSSPFTRSPCTATLGVSAICYSSRSCKHVRCAPRSTAPDED 244
++ + G FG+ T L P R +TL V A APDE+
Sbjct: 16 VAPAPGPFGVSASVTALARVPVPSGRRRRWSTLVVCA------------------APDEE 57

Query: 245 KMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
K+T+RS +DFPIE +R + GR PD F + SPMKTPL
Sbjct: 58 KITKRSPLDFPIEWERPKPGRRPDIFPKFSPMKTPL 93


>tr|Q9SII4|Q9SII4_ARATH Expressed protein (Putative uncharacterized
protein) (At2g17240/T23A1.10) OS=Arabidopsis thaliana
GN=At2g17240 PE=2 SV=1
Length = 140

Score = 58.2 bits (139), Expect = 4e-07
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = +2

Query: 224 STAPDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
S AP+E+K+TRR+ +DFPIE +R + GR PD F + SPMKTPL
Sbjct: 60 SMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKTPL 102


>tr|Q6K5Y3|Q6K5Y3_ORYSJ Os02g0614200 protein OS=Oryza sativa subsp.
japonica GN=OJ2055_H10.18 PE=2 SV=1
Length = 144

Score = 58.2 bits (139), Expect = 4e-07
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2

Query: 230 APDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
APDE+K+TRRS +DFPIE ++ + GR PD F + SPMKTPL
Sbjct: 57 APDEEKITRRSPLDFPIEWEKPKPGRRPDIFPKFSPMKTPL 97


>tr|B6UA24|B6UA24_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 131

Score = 58.2 bits (139), Expect = 4e-07
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2

Query: 230 APDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
APDE+K+T+RS +DFPIE +R + GR PD F + SPMKTPL
Sbjct: 44 APDEEKITKRSPLDFPIEWERPKPGRRPDIFPKFSPMKTPL 84