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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961042
Clone id TST39A01NGRL0009_A19
Library
Length 597
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_A19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATGAGTCGCTTGGCAACCGTTGACCTGTACCTCAAAGCAGATGCACTTCGCGTTGCACTG
GATCATCTCATCAAGCTGCGGCCGGTTTGGCATGTGCTTGTGTACAACCCCTCTGCGTGA
GAATTCATCACCTTTCACGCGTAGCCCTTGTACAGCCACACTGGGCGTGAGCGCCATCTG
CTATTCCTCAAGGAGTTGCAAGCACGTAAGATGCGCACCTCGCTCGACGGCTCCCGACGA
AGATAAAATGACCAGACGATCTCATATTGATTTTCCCATTGAATGCAAGAGAGCCCGAGC
TGGGAGACTGCCAGATAGTTTTCTGCAGCTCAGTCCAATGAAAACTCCACTCCCTCAGCC
TCCTACAACTGATCCTCCAGATGAAGATGAAGAGGAGGAGAAAAAAGAAGAATAACAGAA
GCCAGAGGAGGAGCCTGATACACCACCTAAAGAGACATGATTCTTACTGGTCTTCTCAGT
AATGGTGTTTTGAGTGAGCTGGGTGGTGTGCTTCAAAGAGGTGACTGATCATTTCGAAGC
TAACGGGGTGCAAGAATTGCCAAACCTGGTTTCTGCTCTCACACTCTTCATCAACTT
■■Homology search results ■■ -
sp_hit_id P26010
Definition sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens
Align length 64
Score (bit) 32.3
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961042|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_A19, 5'
         (597 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE...    32   1.9  
sp|A4YSR9|Y3147_BRASO UPF0178 protein BRADO3147 OS=Bradyrhizobiu...    32   3.2  
sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 OS=Mus ...    31   5.4  
sp|P29025|CHI1_RHINI Chitinase 1 OS=Rhizopus niveus GN=CHI1 PE=3...    31   5.4  
sp|Q83JD2|YRDB_SHIFL Uncharacterized protein yrdB OS=Shigella fl...    30   9.3  
sp|P45795|YRDB_ECOLI Uncharacterized protein yrdB OS=Escherichia...    30   9.3  

>sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1
           SV=1
          Length = 798

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +2

Query: 26  CTSKQMHFALHWIISSSCGRFGMCLCTTPLRENSSPFTRSPCTATLGVSAICYSSRSCKH 205
           C+  Q H     + S + GR G  LC   + E SSP   S C A  G   +C     C+ 
Sbjct: 488 CSDGQGHLQCG-VCSCAPGRLGR-LCECSVAELSSPDLESGCRAPNGTGPLCSGKGHCQC 545

Query: 206 VRCA 217
            RC+
Sbjct: 546 GRCS 549


>sp|A4YSR9|Y3147_BRASO UPF0178 protein BRADO3147 OS=Bradyrhizobium
           sp. (strain ORS278) GN=BRADO3147 PE=3 SV=1
          Length = 164

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +2

Query: 65  ISSSCGRFGMCLCTTPLRENSSPFTRSPCTATLGVSAICYSSRSCKHVRCAPRSTAPDED 244
           ++S C + G  +    +  N  PFT      TL V  +    RS   V   PRS  P  D
Sbjct: 83  LASRCVKAGSAV----IAPNGKPFTEESMGMTLAVRNLMTDLRSSGEVTGGPRSFTP-RD 137

Query: 245 KMTRRSHIDFPI-ECKRARAGRL 310
           + T  S +D  I   +R RA R+
Sbjct: 138 RSTFLSTLDTTIRRVQRQRAARI 160


>sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 OS=Mus
           musculus GN=Fras1 PE=2 SV=1
          Length = 4010

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
 Frame = +2

Query: 5   VAWQPLTCTSKQMHFA---LHWIISSSCGRFGMCLCTTP--------LRENSSPFTRSPC 151
           V  +P+ C + +  F    + WI  + C     C   TP        + E+ + +  +PC
Sbjct: 55  VICKPVVCKNPRCAFEKGEVLWIAPNQC--CPQCAPRTPGSCHHEGKIHEHGTEWASAPC 112

Query: 152 TATLGVSAICYSSRSCKHVRCAPRSTAPDE 241
           T    V +  +    C H +C P S  P E
Sbjct: 113 T----VCSCTHGEVRCSHQQCTPLSCGPQE 138


>sp|P29025|CHI1_RHINI Chitinase 1 OS=Rhizopus niveus GN=CHI1 PE=3
           SV=1
          Length = 493

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 44  HFALHWIISSSCGRFGMCLCTTPLRENSSPFTRSPCTATLGVSAICYSSRSC 199
           H  L+ I+  S    G     TP    SS  T S  TA+  +  + Y+ RSC
Sbjct: 301 HSELYSIVHGSSAALGQAARKTPFPNTSSITTTSLATASSALFPLLYAGRSC 352


>sp|Q83JD2|YRDB_SHIFL Uncharacterized protein yrdB OS=Shigella
          flexneri GN=yrdB PE=4 SV=1
          Length = 85

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 90 PNRPQLDEMIQCNAKCICFEVQVNGCQAT 4
          P+R + DE    N KC+CF   VNG Q T
Sbjct: 8  PDREEWDE----NKKCVCFPALVNGMQLT 32


>sp|P45795|YRDB_ECOLI Uncharacterized protein yrdB OS=Escherichia
          coli (strain K12) GN=yrdB PE=4 SV=1
          Length = 85

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 90 PNRPQLDEMIQCNAKCICFEVQVNGCQAT 4
          P+R + DE    N KC+CF   VNG Q T
Sbjct: 8  PDREEWDE----NKKCVCFPALVNGMQLT 32
tr_hit_id A9PBZ2
Definition tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Populus trichocarpa
Align length 83
Score (bit) 63.5
E-value 9.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961042|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_A19, 5'
         (597 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Popul...    64   9e-09
tr|A7P7B9|A7P7B9_VITVI Chromosome chr9 scaffold_7, whole genome ...    61   6e-08
tr|A9RTT9|A9RTT9_PHYPA Predicted protein OS=Physcomitrella paten...    60   1e-07
tr|A9RFX0|A9RFX0_PHYPA Predicted protein OS=Physcomitrella paten...    60   1e-07
tr|A7PEQ7|A7PEQ7_VITVI Chromosome chr11 scaffold_13, whole genom...    59   2e-07
tr|B8AFF4|B8AFF4_ORYSI Putative uncharacterized protein OS=Oryza...    59   3e-07
tr|B6SN44|B6SN44_MAIZE Putative uncharacterized protein OS=Zea m...    59   3e-07
tr|Q9SII4|Q9SII4_ARATH Expressed protein (Putative uncharacteriz...    58   4e-07
tr|Q6K5Y3|Q6K5Y3_ORYSJ Os02g0614200 protein OS=Oryza sativa subs...    58   4e-07
tr|B6UA24|B6UA24_MAIZE Putative uncharacterized protein OS=Zea m...    58   4e-07
tr|B6U119|B6U119_MAIZE Putative uncharacterized protein OS=Zea m...    58   4e-07
tr|B6TEN8|B6TEN8_MAIZE Putative uncharacterized protein OS=Zea m...    58   4e-07
tr|Q9LV56|Q9LV56_ARATH Gb|AAD25142.1 (Putative uncharacterized p...    56   1e-06
tr|Q8GWM3|Q8GWM3_ARATH Putative uncharacterized protein At3g2450...    55   2e-06
tr|Q8LE64|Q8LE64_ARATH Putative uncharacterized protein OS=Arabi...    54   7e-06
tr|Q6GZT3|Q6GZT3_FRG3V Putative uncharacterized protein OS=Frog ...    35   2.5  
tr|A3A914|A3A914_ORYSJ Putative uncharacterized protein OS=Oryza...    34   5.6  

>tr|A9PBZ2|A9PBZ2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 147

 Score = 63.5 bits (153), Expect = 9e-09
 Identities = 37/83 (44%), Positives = 46/83 (55%)
 Frame = +2

Query: 104 TTPLRENSSPFTRSPCTATLGVSAICYSSRSCKHVRCAPRSTAPDEDKMTRRSHIDFPIE 283
           T     +SS F    C   L    +C  SR  K  +    S APDE+K+TRRS +DFPIE
Sbjct: 26  TASASSSSSCFKSQFCGWFLAGRLVCSGSRKQKK-QMQVVSMAPDEEKLTRRSPLDFPIE 84

Query: 284 CKRARAGRLPDSFLQLSPMKTPL 352
            +R + G  PD F Q SPMKTP+
Sbjct: 85  WERPKPGSRPDIFPQFSPMKTPI 107


>tr|A7P7B9|A7P7B9_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034399001
           PE=4 SV=1
          Length = 84

 Score = 60.8 bits (146), Expect = 6e-08
 Identities = 28/41 (68%), Positives = 33/41 (80%)
 Frame = +2

Query: 230 APDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
           AP+E+KMTRRS +DFPIE +R + GR PD F Q SPMKTPL
Sbjct: 2   APEEEKMTRRSPLDFPIEWERPKPGRRPDIFPQFSPMKTPL 42


>tr|A9RTT9|A9RTT9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_56105 PE=4 SV=1
          Length = 78

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 29/41 (70%), Positives = 31/41 (75%)
 Frame = +2

Query: 230 APDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
           APDE+KMTRRS +DFPIE  R R GR  D F Q SPMKTPL
Sbjct: 2   APDEEKMTRRSPLDFPIEWDRPRPGRRADIFPQFSPMKTPL 42


>tr|A9RFX0|A9RFX0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_65594 PE=4 SV=1
          Length = 79

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 29/41 (70%), Positives = 31/41 (75%)
 Frame = +2

Query: 230 APDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
           APDE+KMTRRS +DFPIE  R R GR  D F Q SPMKTPL
Sbjct: 2   APDEEKMTRRSPLDFPIEWDRPRPGRRADIFPQFSPMKTPL 42


>tr|A7PEQ7|A7PEQ7_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016751001
           PE=4 SV=1
          Length = 147

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 27/43 (62%), Positives = 33/43 (76%)
 Frame = +2

Query: 224 STAPDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
           S AP+E+K+TRR+ +DFPIE  R + GR PD F Q SPMKTPL
Sbjct: 64  SMAPEEEKLTRRNPLDFPIEWNRPKPGRRPDIFPQFSPMKTPL 106


>tr|B8AFF4|B8AFF4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08059 PE=4 SV=1
          Length = 144

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 30/76 (39%), Positives = 44/76 (57%)
 Frame = +2

Query: 125 SSPFTRSPCTATLGVSAICYSSRSCKHVRCAPRSTAPDEDKMTRRSHIDFPIECKRARAG 304
           ++P       A++ ++     SR  +         APDE+K+TRRS +DFPIE ++ + G
Sbjct: 22  AAPGALGASVASVSLARAAVPSRRRRRWDALVVCAAPDEEKITRRSPLDFPIEWEKPKPG 81

Query: 305 RLPDSFLQLSPMKTPL 352
           R PD F + SPMKTPL
Sbjct: 82  RRPDIFPKFSPMKTPL 97


>tr|B6SN44|B6SN44_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 141

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 37/96 (38%), Positives = 49/96 (51%)
 Frame = +2

Query: 65  ISSSCGRFGMCLCTTPLRENSSPFTRSPCTATLGVSAICYSSRSCKHVRCAPRSTAPDED 244
           ++ + G FG+    T L     P  R    +TL V A                  APDE+
Sbjct: 16  VAPAPGPFGVSASVTALARVPVPSGRRRRWSTLVVCA------------------APDEE 57

Query: 245 KMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
           K+T+RS +DFPIE +R + GR PD F + SPMKTPL
Sbjct: 58  KITKRSPLDFPIEWERPKPGRRPDIFPKFSPMKTPL 93


>tr|Q9SII4|Q9SII4_ARATH Expressed protein (Putative uncharacterized
           protein) (At2g17240/T23A1.10) OS=Arabidopsis thaliana
           GN=At2g17240 PE=2 SV=1
          Length = 140

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 26/43 (60%), Positives = 34/43 (79%)
 Frame = +2

Query: 224 STAPDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
           S AP+E+K+TRR+ +DFPIE +R + GR PD F + SPMKTPL
Sbjct: 60  SMAPEEEKLTRRNPLDFPIEWERPKPGRRPDIFPKFSPMKTPL 102


>tr|Q6K5Y3|Q6K5Y3_ORYSJ Os02g0614200 protein OS=Oryza sativa subsp.
           japonica GN=OJ2055_H10.18 PE=2 SV=1
          Length = 144

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 26/41 (63%), Positives = 33/41 (80%)
 Frame = +2

Query: 230 APDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
           APDE+K+TRRS +DFPIE ++ + GR PD F + SPMKTPL
Sbjct: 57  APDEEKITRRSPLDFPIEWEKPKPGRRPDIFPKFSPMKTPL 97


>tr|B6UA24|B6UA24_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 131

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 26/41 (63%), Positives = 33/41 (80%)
 Frame = +2

Query: 230 APDEDKMTRRSHIDFPIECKRARAGRLPDSFLQLSPMKTPL 352
           APDE+K+T+RS +DFPIE +R + GR PD F + SPMKTPL
Sbjct: 44  APDEEKITKRSPLDFPIEWERPKPGRRPDIFPKFSPMKTPL 84