DK961045
Clone id TST39A01NGRL0009_A22
Library
Length 707
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_A22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
AGAAATTTCTCCAATGCAGGTGCATTGGGTCTGTCTGTGTTAGGGTTTATTGGGTGCAGT
AGCAGGCCGATAGTTCTGTTATGGGACAGCTTCGTGACTGGTGGCCCTCCGAGGATGCCC
TTGTGAAAAGATCTTCCGCAGTGCCTCCCAACATAACGCTCACACATTCTTCTCCTCCTC
TGCAATTACTAGAAGCAGCAGCAGCTCTCAATGATGACGTAGGCCCTGCCTGCGGTGCAT
TCAACAACCAGAACTATCCCTACGTTCCTTCCTCAGCCCCTCAAGTGTGTCCCCGCCCAC
CCATCAAGCTGATCAACTCTCAAGACCATAAACAGGAGCTTCTTCGAAATCTCCTCAACC
AGCGGGCCACTGATCTCCCTCAACAAGCACAAGCGATCTCTCCAAGCCTATCTCCACAGG
ACAACACTCTGGTCAACCCTAGGTTGCCAGGCTCATTTGCACATCTCTTACAGCAAGTTC
ACAGCAAGCCATCTCCAAGCTCTTCGCAGCAGGATGACATGTCTTTAACTCTATTTCGGA
AAGGTACCTCACCAACACCTTTCACCACATCAATCTATCATCCCTCCGACGAGTCTTTGA
AATTGGAGAGGAGTAGCGGTGGCAGTGGTGCACATGAATTGCAACAACGCCTTACCAACA
GCAAAGATTCCTCCCCATCAGAGAAGGCACGACGACCTAATCTCATT
■■Homology search results ■■ -
sp_hit_id Q9IBD0
Definition sp|Q9IBD0|CELF1_DANRE CUG-BP- and ETR-3-like factor 1 OS=Danio rerio
Align length 34
Score (bit) 26.9
E-value 2.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961045|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_A22, 5'
(690 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9IBD0|CELF1_DANRE CUG-BP- and ETR-3-like factor 1 OS=Danio r... 27 2.8
sp|Q5FWE3|PRRT3_HUMAN Proline-rich transmembrane protein 3 OS=Ho... 32 4.2
sp|O15234|CASC3_HUMAN Protein CASC3 OS=Homo sapiens GN=CASC3 PE=... 32 4.2
sp|Q8K3W3|CASC3_MOUSE Protein CASC3 OS=Mus musculus GN=Casc3 PE=... 31 5.5
sp|Q9XTA5|HIF1A_BOVIN Hypoxia-inducible factor 1 alpha OS=Bos ta... 31 7.1
sp|Q0PGG7|HIF1A_BOSMU Hypoxia-inducible factor 1 alpha OS=Bos mu... 31 7.1
sp|Q6FW61|RIX1_CANGA Pre-rRNA-processing protein RIX1 OS=Candida... 31 7.2
sp|Q5M7E3|NSUN4_XENLA Putative methyltransferase NSUN4 OS=Xenopu... 30 9.4
sp|P54269|CAUP_DROME Homeobox protein caupolican OS=Drosophila m... 30 9.4

>sp|Q9IBD0|CELF1_DANRE CUG-BP- and ETR-3-like factor 1 OS=Danio
rerio GN=cugbp1 PE=1 SV=1
Length = 501

Score = 26.9 bits (58), Expect(2) = 2.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3

Query: 321 ASSKSPQPAGH*SPSTSTSDLSKPISTGQHSGQP 422
AS+ P G + +TS+S LS S+G SGQP
Sbjct: 267 ASATQATPTGSSALTTSSSPLSVLTSSGTPSGQP 300



Score = 23.9 bits (50), Expect(2) = 2.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1

Query: 517 FRKGTSPTPFTTSIYHPSDESLKLERSSGGSGA 615
++ G+SPT T+S +P L+ + G+GA
Sbjct: 308 YKAGSSPTSSTSSSVNPMASLGALQSLAAGAGA 340


>sp|Q5FWE3|PRRT3_HUMAN Proline-rich transmembrane protein 3 OS=Homo
sapiens GN=PRRT3 PE=1 SV=3
Length = 981

Score = 31.6 bits (70), Expect = 4.2
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Frame = +1

Query: 67 GQLRDWWPSEDAL-VKRSSAVPPNITLTHSSPPXXXXXXXXXXNDDVGPACGAFNNQ--- 234
GQ W P ++ L K S VPP H PP V G F
Sbjct: 176 GQEGQWPPRDEGLKAKTKSRVPPTSPSDHQGPPHTLVSHSGTVKRPVLEGQGGFEEHLQE 235

Query: 235 -----NYPYVPSSAPQVCPRPPIKLINSQD 309
++ +AP V PP++++ SQ+
Sbjct: 236 AAQGPHFTQQDPAAPDVGSVPPVEVVYSQE 265


>sp|O15234|CASC3_HUMAN Protein CASC3 OS=Homo sapiens GN=CASC3 PE=1
SV=2
Length = 703

Score = 31.6 bits (70), Expect = 4.2
Identities = 22/99 (22%), Positives = 36/99 (36%)
Frame = +1

Query: 127 PPNITLTHSSPPXXXXXXXXXXNDDVGPACGAFNNQNYPYVPSSAPQVCPRPPIKLINSQ 306
PP ++++ PP + P F N +YPY P + P P PP L +
Sbjct: 601 PPPVSMSPGQPPPQQLLAPTYFS---APGVMNFGNPSYPYAPGALP---PPPPPHLYPNT 654

Query: 307 DHKQELLRNLLNQRATDLPQQAQAISPSLSPQDNTLVNP 423
++ + Q + P +PQ T+ P
Sbjct: 655 QAPSQVYGGVTYYNPAQQQVQPKPSPPRRTPQPVTIKPP 693


>sp|Q8K3W3|CASC3_MOUSE Protein CASC3 OS=Mus musculus GN=Casc3 PE=1
SV=2
Length = 697

Score = 31.2 bits (69), Expect = 5.5
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +1

Query: 127 PPNITLTHSSPPXXXXXXXXXXNDDVGPACGAFNNQNYPYVPSSAPQVCPRPPIKLINSQ 306
PP ++++ PP + P F N NYPY P + P P PP N+Q
Sbjct: 596 PPPVSMSPGQPPPQQLLAPTYFS---APGVMNFGNPNYPYAPGALP---PPPPHLYPNTQ 649


>sp|Q9XTA5|HIF1A_BOVIN Hypoxia-inducible factor 1 alpha OS=Bos
taurus GN=HIF1A PE=2 SV=1
Length = 823

Score = 30.8 bits (68), Expect = 7.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2

Query: 401 RTTLWSTLGCQAHLHISYSKFTASHLQALRSRMTCL*LYFGKVPH 535
++ W L C H+H+ + S + MTCL L +PH
Sbjct: 185 KSATWKVLHCTGHIHVYDTNSNQSQCGYKKPPMTCLVLICEPIPH 229


>sp|Q0PGG7|HIF1A_BOSMU Hypoxia-inducible factor 1 alpha OS=Bos mutus
grunniens GN=HIF1A PE=2 SV=1
Length = 823

Score = 30.8 bits (68), Expect = 7.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2

Query: 401 RTTLWSTLGCQAHLHISYSKFTASHLQALRSRMTCL*LYFGKVPH 535
++ W L C H+H+ + S + MTCL L +PH
Sbjct: 185 KSATWKVLHCTGHIHVYDTNSNQSQCGYKKPPMTCLVLICEPIPH 229


>sp|Q6FW61|RIX1_CANGA Pre-rRNA-processing protein RIX1 OS=Candida
glabrata GN=RIX1 PE=3 SV=1
Length = 767

Score = 30.8 bits (68), Expect = 7.2
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +1

Query: 319 ELLRNLL----NQRATDLPQQAQAISPSLSPQDNTLVNPRLPGSFAHLLQQ 459
ELLR L+ N+R T LP I S + L +PRLP S H +++
Sbjct: 567 ELLRTLVIQPGNERVTILPMAVNIIKESSDDVFDILSHPRLPMSILHSIEK 617


>sp|Q5M7E3|NSUN4_XENLA Putative methyltransferase NSUN4 OS=Xenopus
laevis GN=nsun4 PE=2 SV=1
Length = 406

Score = 30.4 bits (67), Expect = 9.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1

Query: 292 LINSQDHKQELLRNLLNQRATDLPQQAQAISPSLSPQDN 408
L+N+ HK+ +L NL +A D +AQ++ L Q+N
Sbjct: 73 LVNNFSHKETVLNNLSALKAKDFISEAQSVISLLQTQNN 111


>sp|P54269|CAUP_DROME Homeobox protein caupolican OS=Drosophila
melanogaster GN=caup PE=1 SV=2
Length = 693

Score = 30.4 bits (67), Expect = 9.4
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1

Query: 208 PACGAFNNQNYPYVPSSAPQVCPRPPIKLINSQDHKQELLRNLLNQR 348
P A+ QN+ Y PSSA Q P P+ Q H+Q+ L+ L Q+
Sbjct: 475 PPTAAYLGQNF-YPPSSADQQLPHQPL-----QQHQQQQLQQLQQQQ 515


tr_hit_id A2GM88
Definition tr|A2GM88|A2GM88_TRIVA Putative uncharacterized protein (Fragment) OS=Trichomonas vaginalis G3
Align length 70
Score (bit) 39.3
E-value 0.24
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961045|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_A22, 5'
(690 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A2GM88|A2GM88_TRIVA Putative uncharacterized protein (Fragmen... 39 0.24
tr|Q4WLR4|Q4WLR4_ASPFU WD repeat protein OS=Aspergillus fumigatu... 35 3.5
tr|B0Y8U6|B0Y8U6_ASPFC WD repeat protein OS=Aspergillus fumigatu... 35 3.5
tr|Q0CP86|Q0CP86_ASPTN Predicted protein OS=Aspergillus terreus ... 34 7.7

>tr|A2GM88|A2GM88_TRIVA Putative uncharacterized protein (Fragment)
OS=Trichomonas vaginalis G3 GN=TVAG_232340 PE=4 SV=1
Length = 328

Score = 39.3 bits (90), Expect = 0.24
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +1

Query: 220 AFNNQNYPYVPSSAPQVCPRPPIKLINSQDHKQELLRNLLNQRATDLPQQAQAISPSLSP 399
+ N+ +YP P + PQ P+ P ++I +LL L + ++D PQ +P P
Sbjct: 2 SLNSSDYPQTPQTTPQTTPQTPPQII------LKLLLRLSSDSSSDYPQTTPRSNPQTPP 55

Query: 400 QDNTLVNPRL 429
+ N P++
Sbjct: 56 RSNPQTTPQI 65


>tr|Q4WLR4|Q4WLR4_ASPFU WD repeat protein OS=Aspergillus fumigatus
GN=AFUA_6G12600 PE=4 SV=1
Length = 704

Score = 35.4 bits (80), Expect = 3.5
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +1

Query: 532 SPTPFTTSIYHPSDESLKLERSSGGSGAHELQQRLTNSKDSSPSEKAR 675
+PTPFT S Y SL+LE G +G E DSS S+ AR
Sbjct: 80 NPTPFTPSKYFFGPVSLELETQKGQAGPEEAGNGTDQGPDSSTSKAAR 127


>tr|B0Y8U6|B0Y8U6_ASPFC WD repeat protein OS=Aspergillus fumigatus
(strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_078600
PE=4 SV=1
Length = 704

Score = 35.4 bits (80), Expect = 3.5
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +1

Query: 532 SPTPFTTSIYHPSDESLKLERSSGGSGAHELQQRLTNSKDSSPSEKAR 675
+PTPFT S Y SL+LE G +G E DSS S+ AR
Sbjct: 80 NPTPFTPSKYFFGPVSLELETQKGQAGPEEAGNGTDQGPDSSTSKAAR 127


>tr|Q0CP86|Q0CP86_ASPTN Predicted protein OS=Aspergillus terreus
(strain NIH 2624) GN=ATEG_04498 PE=4 SV=1
Length = 900

Score = 34.3 bits (77), Expect = 7.7
Identities = 39/135 (28%), Positives = 50/135 (37%), Gaps = 21/135 (15%)
Frame = +1

Query: 82 WWPSEDALVKRSSAVPPNITLTHS----SPPXXXXXXXXXXNDDVGPACGAFNNQNYPYV 249
W P DA + S P +TH+ PP VGP A NN +
Sbjct: 144 WTPVPDAQARSSLTTLPPSDITHTVPDVPPPSSHVAQHFPNASAVGP---AVNN----WA 196

Query: 250 PSSAPQVCPRPPIKLINSQDHK----QELLRNL------------LNQRATDLPQQAQ-A 378
P S PQ P K+ NS Q LL NL + Q ATD QQ+
Sbjct: 197 PESVPQDRPDAQGKVANSTGEDGVDFQNLLDNLPPSTTAAPSADAVPQAATDEAQQSSPG 256

Query: 379 ISPSLSPQDNTLVNP 423
+ P PQ+ ++P
Sbjct: 257 LPPRPPPQEKPSIHP 271