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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961045
Clone id TST39A01NGRL0009_A22
Library
Length 707
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_A22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AGAAATTTCTCCAATGCAGGTGCATTGGGTCTGTCTGTGTTAGGGTTTATTGGGTGCAGT
AGCAGGCCGATAGTTCTGTTATGGGACAGCTTCGTGACTGGTGGCCCTCCGAGGATGCCC
TTGTGAAAAGATCTTCCGCAGTGCCTCCCAACATAACGCTCACACATTCTTCTCCTCCTC
TGCAATTACTAGAAGCAGCAGCAGCTCTCAATGATGACGTAGGCCCTGCCTGCGGTGCAT
TCAACAACCAGAACTATCCCTACGTTCCTTCCTCAGCCCCTCAAGTGTGTCCCCGCCCAC
CCATCAAGCTGATCAACTCTCAAGACCATAAACAGGAGCTTCTTCGAAATCTCCTCAACC
AGCGGGCCACTGATCTCCCTCAACAAGCACAAGCGATCTCTCCAAGCCTATCTCCACAGG
ACAACACTCTGGTCAACCCTAGGTTGCCAGGCTCATTTGCACATCTCTTACAGCAAGTTC
ACAGCAAGCCATCTCCAAGCTCTTCGCAGCAGGATGACATGTCTTTAACTCTATTTCGGA
AAGGTACCTCACCAACACCTTTCACCACATCAATCTATCATCCCTCCGACGAGTCTTTGA
AATTGGAGAGGAGTAGCGGTGGCAGTGGTGCACATGAATTGCAACAACGCCTTACCAACA
GCAAAGATTCCTCCCCATCAGAGAAGGCACGACGACCTAATCTCATT
■■Homology search results ■■ -
sp_hit_id Q9IBD0
Definition sp|Q9IBD0|CELF1_DANRE CUG-BP- and ETR-3-like factor 1 OS=Danio rerio
Align length 34
Score (bit) 26.9
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961045|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_A22, 5'
         (690 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9IBD0|CELF1_DANRE CUG-BP- and ETR-3-like factor 1 OS=Danio r...    27   2.8  
sp|Q5FWE3|PRRT3_HUMAN Proline-rich transmembrane protein 3 OS=Ho...    32   4.2  
sp|O15234|CASC3_HUMAN Protein CASC3 OS=Homo sapiens GN=CASC3 PE=...    32   4.2  
sp|Q8K3W3|CASC3_MOUSE Protein CASC3 OS=Mus musculus GN=Casc3 PE=...    31   5.5  
sp|Q9XTA5|HIF1A_BOVIN Hypoxia-inducible factor 1 alpha OS=Bos ta...    31   7.1  
sp|Q0PGG7|HIF1A_BOSMU Hypoxia-inducible factor 1 alpha OS=Bos mu...    31   7.1  
sp|Q6FW61|RIX1_CANGA Pre-rRNA-processing protein RIX1 OS=Candida...    31   7.2  
sp|Q5M7E3|NSUN4_XENLA Putative methyltransferase NSUN4 OS=Xenopu...    30   9.4  
sp|P54269|CAUP_DROME Homeobox protein caupolican OS=Drosophila m...    30   9.4  

>sp|Q9IBD0|CELF1_DANRE CUG-BP- and ETR-3-like factor 1 OS=Danio
           rerio GN=cugbp1 PE=1 SV=1
          Length = 501

 Score = 26.9 bits (58), Expect(2) = 2.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 321 ASSKSPQPAGH*SPSTSTSDLSKPISTGQHSGQP 422
           AS+    P G  + +TS+S LS   S+G  SGQP
Sbjct: 267 ASATQATPTGSSALTTSSSPLSVLTSSGTPSGQP 300



 Score = 23.9 bits (50), Expect(2) = 2.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 517 FRKGTSPTPFTTSIYHPSDESLKLERSSGGSGA 615
           ++ G+SPT  T+S  +P      L+  + G+GA
Sbjct: 308 YKAGSSPTSSTSSSVNPMASLGALQSLAAGAGA 340


>sp|Q5FWE3|PRRT3_HUMAN Proline-rich transmembrane protein 3 OS=Homo
           sapiens GN=PRRT3 PE=1 SV=3
          Length = 981

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
 Frame = +1

Query: 67  GQLRDWWPSEDAL-VKRSSAVPPNITLTHSSPPXXXXXXXXXXNDDVGPACGAFNNQ--- 234
           GQ   W P ++ L  K  S VPP     H  PP             V    G F      
Sbjct: 176 GQEGQWPPRDEGLKAKTKSRVPPTSPSDHQGPPHTLVSHSGTVKRPVLEGQGGFEEHLQE 235

Query: 235 -----NYPYVPSSAPQVCPRPPIKLINSQD 309
                ++     +AP V   PP++++ SQ+
Sbjct: 236 AAQGPHFTQQDPAAPDVGSVPPVEVVYSQE 265


>sp|O15234|CASC3_HUMAN Protein CASC3 OS=Homo sapiens GN=CASC3 PE=1
           SV=2
          Length = 703

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 22/99 (22%), Positives = 36/99 (36%)
 Frame = +1

Query: 127 PPNITLTHSSPPXXXXXXXXXXNDDVGPACGAFNNQNYPYVPSSAPQVCPRPPIKLINSQ 306
           PP ++++   PP          +    P    F N +YPY P + P   P PP  L  + 
Sbjct: 601 PPPVSMSPGQPPPQQLLAPTYFS---APGVMNFGNPSYPYAPGALP---PPPPPHLYPNT 654

Query: 307 DHKQELLRNLLNQRATDLPQQAQAISPSLSPQDNTLVNP 423
               ++   +          Q +   P  +PQ  T+  P
Sbjct: 655 QAPSQVYGGVTYYNPAQQQVQPKPSPPRRTPQPVTIKPP 693


>sp|Q8K3W3|CASC3_MOUSE Protein CASC3 OS=Mus musculus GN=Casc3 PE=1
           SV=2
          Length = 697

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +1

Query: 127 PPNITLTHSSPPXXXXXXXXXXNDDVGPACGAFNNQNYPYVPSSAPQVCPRPPIKLINSQ 306
           PP ++++   PP          +    P    F N NYPY P + P   P PP    N+Q
Sbjct: 596 PPPVSMSPGQPPPQQLLAPTYFS---APGVMNFGNPNYPYAPGALP---PPPPHLYPNTQ 649


>sp|Q9XTA5|HIF1A_BOVIN Hypoxia-inducible factor 1 alpha OS=Bos
           taurus GN=HIF1A PE=2 SV=1
          Length = 823

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 401 RTTLWSTLGCQAHLHISYSKFTASHLQALRSRMTCL*LYFGKVPH 535
           ++  W  L C  H+H+  +    S     +  MTCL L    +PH
Sbjct: 185 KSATWKVLHCTGHIHVYDTNSNQSQCGYKKPPMTCLVLICEPIPH 229


>sp|Q0PGG7|HIF1A_BOSMU Hypoxia-inducible factor 1 alpha OS=Bos mutus
           grunniens GN=HIF1A PE=2 SV=1
          Length = 823

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 401 RTTLWSTLGCQAHLHISYSKFTASHLQALRSRMTCL*LYFGKVPH 535
           ++  W  L C  H+H+  +    S     +  MTCL L    +PH
Sbjct: 185 KSATWKVLHCTGHIHVYDTNSNQSQCGYKKPPMTCLVLICEPIPH 229


>sp|Q6FW61|RIX1_CANGA Pre-rRNA-processing protein RIX1 OS=Candida
           glabrata GN=RIX1 PE=3 SV=1
          Length = 767

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +1

Query: 319 ELLRNLL----NQRATDLPQQAQAISPSLSPQDNTLVNPRLPGSFAHLLQQ 459
           ELLR L+    N+R T LP     I  S     + L +PRLP S  H +++
Sbjct: 567 ELLRTLVIQPGNERVTILPMAVNIIKESSDDVFDILSHPRLPMSILHSIEK 617


>sp|Q5M7E3|NSUN4_XENLA Putative methyltransferase NSUN4 OS=Xenopus
           laevis GN=nsun4 PE=2 SV=1
          Length = 406

 Score = 30.4 bits (67), Expect = 9.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 292 LINSQDHKQELLRNLLNQRATDLPQQAQAISPSLSPQDN 408
           L+N+  HK+ +L NL   +A D   +AQ++   L  Q+N
Sbjct: 73  LVNNFSHKETVLNNLSALKAKDFISEAQSVISLLQTQNN 111


>sp|P54269|CAUP_DROME Homeobox protein caupolican OS=Drosophila
           melanogaster GN=caup PE=1 SV=2
          Length = 693

 Score = 30.4 bits (67), Expect = 9.4
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 208 PACGAFNNQNYPYVPSSAPQVCPRPPIKLINSQDHKQELLRNLLNQR 348
           P   A+  QN+ Y PSSA Q  P  P+     Q H+Q+ L+ L  Q+
Sbjct: 475 PPTAAYLGQNF-YPPSSADQQLPHQPL-----QQHQQQQLQQLQQQQ 515
tr_hit_id A2GM88
Definition tr|A2GM88|A2GM88_TRIVA Putative uncharacterized protein (Fragment) OS=Trichomonas vaginalis G3
Align length 70
Score (bit) 39.3
E-value 0.24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961045|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_A22, 5'
         (690 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2GM88|A2GM88_TRIVA Putative uncharacterized protein (Fragmen...    39   0.24 
tr|Q4WLR4|Q4WLR4_ASPFU WD repeat protein OS=Aspergillus fumigatu...    35   3.5  
tr|B0Y8U6|B0Y8U6_ASPFC WD repeat protein OS=Aspergillus fumigatu...    35   3.5  
tr|Q0CP86|Q0CP86_ASPTN Predicted protein OS=Aspergillus terreus ...    34   7.7  

>tr|A2GM88|A2GM88_TRIVA Putative uncharacterized protein (Fragment)
           OS=Trichomonas vaginalis G3 GN=TVAG_232340 PE=4 SV=1
          Length = 328

 Score = 39.3 bits (90), Expect = 0.24
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +1

Query: 220 AFNNQNYPYVPSSAPQVCPRPPIKLINSQDHKQELLRNLLNQRATDLPQQAQAISPSLSP 399
           + N+ +YP  P + PQ  P+ P ++I       +LL  L +  ++D PQ     +P   P
Sbjct: 2   SLNSSDYPQTPQTTPQTTPQTPPQII------LKLLLRLSSDSSSDYPQTTPRSNPQTPP 55

Query: 400 QDNTLVNPRL 429
           + N    P++
Sbjct: 56  RSNPQTTPQI 65


>tr|Q4WLR4|Q4WLR4_ASPFU WD repeat protein OS=Aspergillus fumigatus
           GN=AFUA_6G12600 PE=4 SV=1
          Length = 704

 Score = 35.4 bits (80), Expect = 3.5
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +1

Query: 532 SPTPFTTSIYHPSDESLKLERSSGGSGAHELQQRLTNSKDSSPSEKAR 675
           +PTPFT S Y     SL+LE   G +G  E         DSS S+ AR
Sbjct: 80  NPTPFTPSKYFFGPVSLELETQKGQAGPEEAGNGTDQGPDSSTSKAAR 127


>tr|B0Y8U6|B0Y8U6_ASPFC WD repeat protein OS=Aspergillus fumigatus
           (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_078600
           PE=4 SV=1
          Length = 704

 Score = 35.4 bits (80), Expect = 3.5
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +1

Query: 532 SPTPFTTSIYHPSDESLKLERSSGGSGAHELQQRLTNSKDSSPSEKAR 675
           +PTPFT S Y     SL+LE   G +G  E         DSS S+ AR
Sbjct: 80  NPTPFTPSKYFFGPVSLELETQKGQAGPEEAGNGTDQGPDSSTSKAAR 127


>tr|Q0CP86|Q0CP86_ASPTN Predicted protein OS=Aspergillus terreus
           (strain NIH 2624) GN=ATEG_04498 PE=4 SV=1
          Length = 900

 Score = 34.3 bits (77), Expect = 7.7
 Identities = 39/135 (28%), Positives = 50/135 (37%), Gaps = 21/135 (15%)
 Frame = +1

Query: 82  WWPSEDALVKRSSAVPPNITLTHS----SPPXXXXXXXXXXNDDVGPACGAFNNQNYPYV 249
           W P  DA  + S    P   +TH+     PP             VGP   A NN    + 
Sbjct: 144 WTPVPDAQARSSLTTLPPSDITHTVPDVPPPSSHVAQHFPNASAVGP---AVNN----WA 196

Query: 250 PSSAPQVCPRPPIKLINSQDHK----QELLRNL------------LNQRATDLPQQAQ-A 378
           P S PQ  P    K+ NS        Q LL NL            + Q ATD  QQ+   
Sbjct: 197 PESVPQDRPDAQGKVANSTGEDGVDFQNLLDNLPPSTTAAPSADAVPQAATDEAQQSSPG 256

Query: 379 ISPSLSPQDNTLVNP 423
           + P   PQ+   ++P
Sbjct: 257 LPPRPPPQEKPSIHP 271