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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961050
Clone id TST39A01NGRL0009_B03
Library
Length 444
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_B03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGCTTACCGACTTCGGCTACGTGCATGAATCTTCTAAAGCTACCTCCTTATAAAAGGAAA
GACATTCTCAAAGCCAAGCTTCTTTATGCTATTACTGCAGACGCGGGCTTCGATCTAAGC
TGAGAACTCGTTTTCCACAAACTTTGGCTTTACATTCTCCTGTAGGGACCTGGATGTACA
GTAAAGGGAGCCCCCTTTGTGTTGGGGGTTGTGAATAAATTCCAGTCATCTTCAAAAGCA
CACAGCAGGTAGTGGATGTGGCTAGCTAGTGGGCTATATCAAGGGAATACAATCCTACGA
AGTTGCTGCGAGAAAGACGTATACTTCGTGAAATGGTGCAAATGTAAATTTTCCGGTGAT
ATCAATTATCAATAGCTGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GAAAACAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8RWB8
Definition sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana
Align length 40
Score (bit) 69.7
E-value 4.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961050|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_B03, 5'
         (380 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6 OS=Arabido...    70   4e-12
sp|P53119|HUL5_YEAST Probable E3 ubiquitin-protein ligase HUL5 O...    58   1e-08
sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7 OS=Arabido...    57   4e-08
sp|Q08CZ0|UBE3B_XENTR Ubiquitin-protein ligase E3B OS=Xenopus tr...    57   4e-08
sp|Q9ES34|UBE3B_MOUSE Ubiquitin-protein ligase E3B OS=Mus muscul...    57   4e-08
sp|Q7Z3V4|UBE3B_HUMAN Ubiquitin-protein ligase E3B OS=Homo sapie...    57   4e-08
sp|Q15386|UBE3C_HUMAN Ubiquitin-protein ligase E3C OS=Homo sapie...    55   1e-07
sp|Q80U95|UBE3C_MOUSE Ubiquitin-protein ligase E3C OS=Mus muscul...    54   2e-07
sp|Q1K9C4|YFK7_SCHPO Probable E3 ubiquitin protein ligase C167.0...    48   2e-05
sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabido...    47   4e-05
sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4 OS=Arabido...    45   1e-04
sp|Q9DBH0|WWP2_MOUSE NEDD4-like E3 ubiquitin-protein ligase WWP2...    44   2e-04
sp|Q05086|UBE3A_HUMAN Ubiquitin-protein ligase E3A OS=Homo sapie...    44   2e-04
sp|Q28BK1|HACE1_XENTR E3 ubiquitin-protein ligase HACE1 OS=Xenop...    44   3e-04
sp|Q6DCL5|HACE1_XENLA E3 ubiquitin-protein ligase HACE1 OS=Xenop...    44   3e-04
sp|Q3U0D9|HACE1_MOUSE E3 ubiquitin-protein ligase HACE1 OS=Mus m...    44   3e-04
sp|Q8IYU2|HACE1_HUMAN E3 ubiquitin-protein ligase HACE1 OS=Homo ...    44   3e-04
sp|O00308|WWP2_HUMAN NEDD4-like E3 ubiquitin-protein ligase WWP2...    43   4e-04
sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4...    43   4e-04
sp|Q8BZZ3|WWP1_MOUSE NEDD4-like E3 ubiquitin-protein ligase WWP1...    43   6e-04
sp|Q9H0M0|WWP1_HUMAN NEDD4-like E3 ubiquitin-protein ligase WWP1...    43   6e-04
sp|O08759|UBE3A_MOUSE Ubiquitin-protein ligase E3A OS=Mus muscul...    43   6e-04
sp|Q8C863|ITCH_MOUSE E3 ubiquitin-protein ligase Itchy OS=Mus mu...    43   6e-04
sp|Q96J02|ITCH_HUMAN E3 ubiquitin-protein ligase Itchy homolog O...    43   6e-04
sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 O...    43   6e-04
sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4...    43   6e-04
sp|Q5RD78|HECD2_PONAB Probable E3 ubiquitin-protein ligase HECTD...    41   0.002
sp|Q5U5R9|HECD2_HUMAN Probable E3 ubiquitin-protein ligase HECTD...    41   0.002
sp|Q9Y0H4|SUDX_DROME E3 ubiquitin-protein ligase Su(dx) OS=Droso...    40   0.005
sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3...    40   0.005

>sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis
            thaliana GN=UPL6 PE=2 SV=1
          Length = 1029

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 31/40 (77%), Positives = 38/40 (95%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPTSATCMNLLKLPPY+ K++L+ KL+YAI+A+AGFDLS
Sbjct: 990  RLPTSATCMNLLKLPPYQSKELLETKLMYAISAEAGFDLS 1029


>sp|P53119|HUL5_YEAST Probable E3 ubiquitin-protein ligase HUL5
           OS=Saccharomyces cerevisiae GN=HUL5 PE=1 SV=1
          Length = 910

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = +1

Query: 1   RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
           RLPT++TC+NLLKLP Y+ K IL+ KLLYAI + A FDLS
Sbjct: 871 RLPTASTCVNLLKLPDYRNKTILREKLLYAINSGARFDLS 910


>sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis
            thaliana GN=UPL7 PE=2 SV=1
          Length = 1142

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLP+++TC N LKLP YKR   ++ KLLYAIT++AGF+LS
Sbjct: 1103 RLPSASTCYNTLKLPTYKRASTMREKLLYAITSNAGFELS 1142


>sp|Q08CZ0|UBE3B_XENTR Ubiquitin-protein ligase E3B OS=Xenopus
            tropicalis GN=ube3b PE=2 SV=1
          Length = 1072

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 26/40 (65%), Positives = 32/40 (80%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPTS+TC NLLKLP Y +K IL+ KL YAI+ + GF+LS
Sbjct: 1033 RLPTSSTCFNLLKLPNYSKKGILREKLRYAISMNTGFELS 1072


>sp|Q9ES34|UBE3B_MOUSE Ubiquitin-protein ligase E3B OS=Mus musculus
            GN=Ube3b PE=2 SV=3
          Length = 1070

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 25/40 (62%), Positives = 32/40 (80%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPTS+TC NLLKLP Y +K +L+ KL YAI+ + GF+LS
Sbjct: 1031 RLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTGFELS 1070


>sp|Q7Z3V4|UBE3B_HUMAN Ubiquitin-protein ligase E3B OS=Homo sapiens
            GN=UBE3B PE=1 SV=2
          Length = 1068

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 25/40 (62%), Positives = 32/40 (80%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPTS+TC NLLKLP Y +K +L+ KL YAI+ + GF+LS
Sbjct: 1029 RLPTSSTCFNLLKLPNYSKKSVLREKLRYAISMNTGFELS 1068


>sp|Q15386|UBE3C_HUMAN Ubiquitin-protein ligase E3C OS=Homo sapiens
            GN=UBE3C PE=1 SV=3
          Length = 1083

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPT++TCMNLLKLP +  + +L++KLLYAI   AGF+LS
Sbjct: 1044 RLPTASTCMNLLKLPEFYDETLLRSKLLYAIECAAGFELS 1083


>sp|Q80U95|UBE3C_MOUSE Ubiquitin-protein ligase E3C OS=Mus musculus
            GN=Ube3c PE=2 SV=2
          Length = 1083

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPT++TCMNLLKLP +  + +L++KLLYAI   AGF+LS
Sbjct: 1044 RLPTASTCMNLLKLPEFYDEALLRSKLLYAIECAAGFELS 1083


>sp|Q1K9C4|YFK7_SCHPO Probable E3 ubiquitin protein ligase C167.07c
            OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1
          Length = 1029

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 22/40 (55%), Positives = 28/40 (70%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPT++TC+NLLKLP Y  K  L+ KLL A+ +  GF  S
Sbjct: 990  RLPTASTCVNLLKLPMYSTKQTLRDKLLTAVRSGVGFGFS 1029


>sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis
            thaliana GN=UPL3 PE=1 SV=1
          Length = 1888

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +1

Query: 4    LPTSATCMNLLKLPPYKRKDILKAKLLYAITADAG-FDLS 120
            LP+  TC N LKLPPY  K+I+  KLLYAI    G FDLS
Sbjct: 1849 LPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888
tr_hit_id B8LKQ9
Definition tr|B8LKQ9|B8LKQ9_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 40
Score (bit) 73.6
E-value 5.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961050|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_B03, 5'
         (380 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LKQ9|B8LKQ9_PICSI Putative uncharacterized protein OS=Picea...    74   5e-12
tr|A9T6J5|A9T6J5_PHYPA Predicted protein OS=Physcomitrella paten...    70   5e-11
tr|B3H5A6|B3H5A6_ARATH Uncharacterized protein At3g17205.2 OS=Ar...    70   7e-11
tr|A7Q8U7|A7Q8U7_VITVI Chromosome chr5 scaffold_64, whole genome...    69   1e-10
tr|Q5W724|Q5W724_ORYSJ Os05g0159000 protein OS=Oryza sativa subs...    68   2e-10
tr|B8AYD7|B8AYD7_ORYSI Putative uncharacterized protein OS=Oryza...    68   2e-10
tr|A3B070|A3B070_ORYSJ Putative uncharacterized protein OS=Oryza...    68   2e-10
tr|A3LSX3|A3LSX3_PICST Ubiquitin-protein ligase (E3) OS=Pichia s...    64   5e-09
tr|Q6FTY6|Q6FTY6_CANGA Strain CBS138 chromosome F complete seque...    62   1e-08
tr|A4S6U0|A4S6U0_OSTLU Predicted protein OS=Ostreococcus lucimar...    62   2e-08
tr|A8J200|A8J200_CHLRE Predicted protein OS=Chlamydomonas reinha...    60   4e-08
tr|Q75BG8|Q75BG8_ASHGO ADL280Wp OS=Ashbya gossypii GN=ADL280W PE...    60   5e-08
tr|A5DGV7|A5DGV7_PICGU Putative uncharacterized protein OS=Pichi...    60   7e-08
tr|B2AQZ0|B2AQZ0_PODAN Predicted CDS Pa_4_9230 OS=Podospora anse...    59   9e-08
tr|A7E4Z3|A7E4Z3_SCLS1 Putative uncharacterized protein OS=Scler...    59   9e-08
tr|A5E680|A5E680_LODEL Putative uncharacterized protein OS=Lodde...    59   9e-08
tr|A7TJJ5|A7TJJ5_VANPO Putative uncharacterized protein OS=Vande...    59   2e-07
tr|Q7Q342|Q7Q342_ANOGA AGAP011474-PA OS=Anopheles gambiae GN=AGA...    58   2e-07
tr|Q16PR2|Q16PR2_AEDAE Ubiquitin protein ligase OS=Aedes aegypti...    58   2e-07
tr|Q16J44|Q16J44_AEDAE Ubiquitin protein ligase OS=Aedes aegypti...    58   2e-07
tr|B0W765|B0W765_CULQU Ubiquitin protein ligase OS=Culex quinque...    58   2e-07
tr|B5VII9|B5VII9_YEAS6 YGL141Wp-like protein OS=Saccharomyces ce...    58   2e-07
tr|A6ZU42|A6ZU42_YEAS7 Ubiquitin ligase (E3) OS=Saccharomyces ce...    58   2e-07
tr|Q6BH29|Q6BH29_DEBHA DEHA2G21824p OS=Debaryomyces hansenii GN=...    58   3e-07
tr|A6RJZ6|A6RJZ6_BOTFB Putative uncharacterized protein OS=Botry...    58   3e-07
tr|A6RAN9|A6RAN9_AJECN Predicted protein OS=Ajellomyces capsulat...    58   3e-07
tr|B8CES6|B8CES6_THAPS Putative uncharacterized protein OS=Thala...    57   3e-07
tr|A8J7F2|A8J7F2_CHLRE Ubiquitin-protein ligase OS=Chlamydomonas...    57   3e-07
tr|A7PPP1|A7PPP1_VITVI Chromosome chr8 scaffold_23, whole genome...    57   3e-07
tr|B7P9S3|B7P9S3_IXOSC Ubiquitin-transferase, putative OS=Ixodes...    57   3e-07

>tr|B8LKQ9|B8LKQ9_PICSI Putative uncharacterized protein OS=Picea
            sitchensis PE=2 SV=1
          Length = 1032

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 33/40 (82%), Positives = 39/40 (97%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPTSATC+NLLKLPPY+ KD+L++KLLYAI+ADAGFDLS
Sbjct: 993  RLPTSATCVNLLKLPPYRSKDVLRSKLLYAISADAGFDLS 1032


>tr|A9T6J5|A9T6J5_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_192116 PE=4 SV=1
          Length = 1036

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 33/40 (82%), Positives = 36/40 (90%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPTSATCMNLLKLPPY+ K+I+  KLLYAITA AGFDLS
Sbjct: 997  RLPTSATCMNLLKLPPYRSKEIIHEKLLYAITAGAGFDLS 1036


>tr|B3H5A6|B3H5A6_ARATH Uncharacterized protein At3g17205.2
            OS=Arabidopsis thaliana GN=At3g17205 PE=4 SV=1
          Length = 1015

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 31/40 (77%), Positives = 38/40 (95%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPTSATCMNLLKLPPY+ K++L+ KL+YAI+A+AGFDLS
Sbjct: 976  RLPTSATCMNLLKLPPYQSKELLETKLMYAISAEAGFDLS 1015


>tr|A7Q8U7|A7Q8U7_VITVI Chromosome chr5 scaffold_64, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00033190001
            PE=4 SV=1
          Length = 1036

 Score = 68.6 bits (166), Expect = 1e-10
 Identities = 32/40 (80%), Positives = 35/40 (87%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPTSATCMNLLKLPPY+ K+ +  KLLYAI ADAGFDLS
Sbjct: 997  RLPTSATCMNLLKLPPYRSKEQMATKLLYAINADAGFDLS 1036


>tr|Q5W724|Q5W724_ORYSJ Os05g0159000 protein OS=Oryza sativa subsp.
            japonica GN=OSJNBa0017J22.6 PE=4 SV=1
          Length = 1030

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPTSATCMNLLKLPPY+ K  L++KLLYAI A+AGFDLS
Sbjct: 991  RLPTSATCMNLLKLPPYRNKTQLESKLLYAINAEAGFDLS 1030


>tr|B8AYD7|B8AYD7_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_18547 PE=4 SV=1
          Length = 1050

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPTSATCMNLLKLPPY+ K  L++KLLYAI A+AGFDLS
Sbjct: 1011 RLPTSATCMNLLKLPPYRNKTQLESKLLYAINAEAGFDLS 1050


>tr|A3B070|A3B070_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_016442 PE=4 SV=1
          Length = 1164

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPTSATCMNLLKLPPY+ K  L++KLLYAI A+AGFDLS
Sbjct: 1125 RLPTSATCMNLLKLPPYRNKTQLESKLLYAINAEAGFDLS 1164


>tr|A3LSX3|A3LSX3_PICST Ubiquitin-protein ligase (E3) OS=Pichia
            stipitis GN=HUL5 PE=4 SV=2
          Length = 977

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 27/40 (67%), Positives = 37/40 (92%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPT++TC+NLLKLP Y+ K+++++KLLYAI A+AGFDLS
Sbjct: 938  RLPTASTCVNLLKLPDYRNKELIRSKLLYAIEAEAGFDLS 977


>tr|Q6FTY6|Q6FTY6_CANGA Strain CBS138 chromosome F complete sequence
            OS=Candida glabrata GN=CAGL0F07821g PE=4 SV=1
          Length = 921

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 29/40 (72%), Positives = 34/40 (85%)
 Frame = +1

Query: 1    RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
            RLPT+ATC+NLLKLP Y  K++L+ KLLYAI A AGFDLS
Sbjct: 882  RLPTAATCVNLLKLPDYADKELLRQKLLYAINAGAGFDLS 921


>tr|A4S6U0|A4S6U0_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_36723 PE=4 SV=1
          Length = 376

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = +1

Query: 1   RLPTSATCMNLLKLPPYKRKDILKAKLLYAITADAGFDLS 120
           RLPT+ATCMNLLKLPPY   D L+ KL+YA+ + +GFDLS
Sbjct: 337 RLPTAATCMNLLKLPPYSSDDALREKLMYAVKSGSGFDLS 376