DK961052 |
Clone id |
TST39A01NGRL0009_B05 |
Library |
TST39 |
Length |
516 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_B05. 5' end sequence. |
Accession |
DK961052 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL251Contig1 |
Sequence |
CGCAGAGAGAGCTGCCGAGCATAGCCAGTGGCCATGGCAGTGATGGCAGCAACAGACATG GCTTTGAGTGCGATGCCTTCCATGGCAGCAGTCACAAGGGCAGACTGCAAGCCATCGAGG AGGGCGGTATCGCTGGGTAGGAAGATGAAGAGCTTCTCAGGTATGAAATCAGAGAGTCGA ATTGGCAGGCTCGGGCTTTCTGAAAGCACAGAGGAGCATTTTGCGAGGGCTGTGTTGGCG CACGCGAGAAGTACGGCTGGGAGCAGAGGGGGGGCTGCTTCTTCTACTTGCAATGTTGCA GACGAGATCTTTCGCGTGGTGCCCATCATGAGTGGCCTTGTGCTCATTGGCATCGCTCTT GGCTTTGTCCTCCTCCGAGTTGAGGCTGCTCTTGAGGAATCTGAGTAAATTGAACCCTCT TCCTCTCTGACCCTACCTGCATTTCTTGTCATAATTTGTAATTCCATGAAAATGTAATCA GTTCTTTTGTGAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P80883 |
Definition |
sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea |
Align length |
34 |
Score (bit) |
48.1 |
E-value |
2.0e-05 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RKI9 |
Definition |
tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
107 |
Score (bit) |
84.7 |
E-value |
2.0e-15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961052|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0009_B05, 5' (491 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella paten... 85 2e-15 tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella paten... 82 1e-14 tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea... 75 2e-12 tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subs... 72 1e-11 tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza... 72 1e-11 tr|B6SRD7|B6SRD7_MAIZE Plastoquinol-plastocyanin reductase OS=Ze... 66 8e-10 tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome ... 66 8e-10 tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis... 66 8e-10 tr|A9PFI7|A9PFI7_POPTR Putative uncharacterized protein OS=Popul... 65 2e-09 tr|B6TLU8|B6TLU8_MAIZE Plastoquinol-plastocyanin reductase OS=Ze... 64 5e-09 tr|A7NTN4|A7NTN4_VITVI Chromosome chr18 scaffold_1, whole genome... 61 3e-08 tr|B7FM90|B7FM90_MEDTR Putative uncharacterized protein OS=Medic... 59 1e-07 tr|O48717|O48717_ARATH Expressed protein (Putative uncharacteriz... 54 4e-06 tr|Q9M5M4|Q9M5M4_EUPES Putative uncharacterized protein OS=Eupho... 52 1e-05 tr|Q9SZY6|Q9SZY6_ARATH Cytochrome b6f complex subunit OS=Arabido... 52 2e-05 tr|Q55JK0|Q55JK0_CRYNE Putative uncharacterized protein OS=Crypt... 37 0.64 tr|Q9XFU3|Q9XFU3_9CHLO Putative uncharacterized protein OS=Chlam... 34 3.2 tr|A2AUN4|A2AUN4_MOUSE ATP-binding cassette sub-family B (MDR/TA... 34 4.2 tr|Q7XYX4|Q7XYX4_LOPEL High-molecular-weight glutenin x-type sub... 34 4.2 tr|Q7XYT9|Q7XYT9_LOPEL High-molecular-weight glutenin x-type sub... 34 4.2 tr|Q67W94|Q67W94_ORYSJ Putative uncharacterized protein P0460H04... 34 4.2 tr|A2TJ27|A2TJ27_LOPEL HMW-GS x-type OS=Lophopyrum elongatum GN=... 34 4.2 tr|Q7Y0K2|Q7Y0K2_LOPEL X-type HMW glutenin subunit Ee2.1 OS=Loph... 33 5.5 tr|Q19A59|Q19A59_LOPEL High molecular weight glutenin x-type sub... 33 5.5 tr|A9PK57|A9PK57_POPJC Putative uncharacterized protein OS=Popul... 33 5.5 tr|Q5KA01|Q5KA01_CRYNE Ubiquitin-specific protease, putative OS=... 33 5.5 tr|Q0ZB32|Q0ZB32_9POAL High molecular weight glutenin x subunit ... 33 7.1 tr|B6LVT9|B6LVT9_BRAFL Putative uncharacterized protein OS=Branc... 33 9.3
>tr|A9RKI9|A9RKI9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_115764 PE=4 SV=1 Length = 112
Score = 84.7 bits (208), Expect = 2e-15 Identities = 51/107 (47%), Positives = 68/107 (63%), Gaps = 1/107 (0%) Frame = +1
Query: 76 PSMAAVTRADCKPSRRAVSLG-RKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHXXX 252 PS+A T + S + LG RK+K+FSG++ ES++ R+G+ STEE FA + Sbjct: 7 PSLAVSTSTSKRSSSK---LGVRKLKNFSGLQPESQVTRMGMPVSTEEAFAN--IRARWS 61
Query: 253 XXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 393 C+VA EIFR+VPIMSGL L+GIA+GFVLLRVEAA+ Sbjct: 62 GRASRGGALSANCDVASEIFRIVPIMSGLTLVGIAIGFVLLRVEAAV 108
>tr|A9TM48|A9TM48_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_147622 PE=4 SV=1 Length = 90
Score = 82.4 bits (202), Expect = 1e-14 Identities = 44/85 (51%), Positives = 58/85 (68%) Frame = +1
Query: 139 RKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHXXXXXXXXXXXXXXXCNVADEIFRV 318 RK+K+F G+KS+S++ R+G+ STEE FA + C+VA EIFR+ Sbjct: 4 RKLKNFGGLKSDSQVTRMGMPVSTEEAFAS--VKAKCSGRVSRGGALAANCDVASEIFRI 61
Query: 319 VPIMSGLVLIGIALGFVLLRVEAAL 393 VPIMSGL L+GIA+GFVLLRVEAA+ Sbjct: 62 VPIMSGLTLVGIAIGFVLLRVEAAV 86
>tr|A9NLD4|A9NLD4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 129
Score = 74.7 bits (182), Expect = 2e-12 Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 3/98 (3%) Frame = +1
Query: 109 KPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVL---AHXXXXXXXXXXXX 279 KP V R +KS++G+K E+++ LG++ +++ FAR V A Sbjct: 27 KPKMNKVCCVRGLKSYAGLKPENKVMNLGVAVHSDKQFARLVTMCRALKANSGGGRGGAL 86
Query: 280 XXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 393 CNVA EI +VPIMS LVLIG+A+GFVLLRVEAA+ Sbjct: 87 ASTCNVASEIATIVPIMSALVLIGVAVGFVLLRVEAAV 124
>tr|Q7Y0C9|Q7Y0C9_ORYSJ Os03g0765900 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0079B15.15 PE=4 SV=1 Length = 118
Score = 72.4 bits (176), Expect = 1e-11 Identities = 41/109 (37%), Positives = 63/109 (57%) Frame = +1
Query: 67 SAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHX 246 + +PS+A A K R V+ M ++SG+K+ +++ LG+ ++ + FA+ V Sbjct: 8 TTLPSLAGAAPAARK--RSGVTYVEGMNAYSGLKALNKVTLLGVRKTADYSFAKVVAKLS 65
Query: 247 XXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 393 CN A EIFR+ IM+GLVL+G+A+GFVLLRVEAA+ Sbjct: 66 PAGGKSRGGAFGAQCNAAGEIFRIAVIMNGLVLVGVAVGFVLLRVEAAV 114
>tr|A2XMB1|A2XMB1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_13659 PE=4 SV=1 Length = 118
Score = 72.4 bits (176), Expect = 1e-11 Identities = 41/109 (37%), Positives = 63/109 (57%) Frame = +1
Query: 67 SAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAHX 246 + +PS+A A K R V+ M ++SG+K+ +++ LG+ ++ + FA+ V Sbjct: 8 TTLPSLAGAAPAARK--RSGVTYVEGMNAYSGLKALNKVTLLGVRKTADYSFAKVVAKLS 65
Query: 247 XXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 393 CN A EIFR+ IM+GLVL+G+A+GFVLLRVEAA+ Sbjct: 66 PAGGKSRGGAFGAQCNAAGEIFRIAVIMNGLVLVGVAVGFVLLRVEAAV 114
>tr|B6SRD7|B6SRD7_MAIZE Plastoquinol-plastocyanin reductase OS=Zea mays PE=4 SV=1 Length = 117
Score = 66.2 bits (160), Expect = 8e-10 Identities = 38/110 (34%), Positives = 61/110 (55%) Frame = +1
Query: 64 LSAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAH 243 ++ +PS+AA K V+ M ++SG+K +++ LG+ ++ + FA+ V + Sbjct: 7 VATVPSLAAPA---AKKRSGGVTYVEGMNAYSGLKGLNKVNMLGVRKTADYSFAKVVASL 63
Query: 244 XXXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEAAL 393 N A EIFR+ M+GLVL+G+A+GFVLLRVEAA+ Sbjct: 64 SPAGRKRRGGAFGAQMNAAAEIFRIAATMNGLVLVGVAVGFVLLRVEAAV 113
>tr|A7P9A2|A7P9A2_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036487001 PE=4 SV=1 Length = 201
Score = 66.2 bits (160), Expect = 8e-10 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Frame = +1
Query: 145 MKSFSGMKSESRIGRLGLSESTEEHFARAV--LAHXXXXXXXXXXXXXXXCNVADEIFRV 318 + SF G+K+ + + LGL TE+ FA+ V L CN EIFR+ Sbjct: 113 LNSFDGLKAYNSVASLGLPVCTEQSFAKIVGSLKSPSQGKGRGGGALSSTCNAVGEIFRI 172
Query: 319 VPIMSGLVLIGIALGFVLLRVEAAL 393 IM+GLVL+G+A+GFVLLR+EA++ Sbjct: 173 AAIMNGLVLVGVAVGFVLLRIEASV 197
>tr|A5AN62|A5AN62_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027615 PE=4 SV=1 Length = 126
Score = 66.2 bits (160), Expect = 8e-10 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 2/85 (2%) Frame = +1
Query: 145 MKSFSGMKSESRIGRLGLSESTEEHFARAV--LAHXXXXXXXXXXXXXXXCNVADEIFRV 318 + SF G+K+ + + LGL TE+ FA+ V L CN EIFR+ Sbjct: 38 LNSFDGLKAYNSVASLGLPVCTEQSFAKIVXSLKSXSQGKGRGGGALSSTCNAVGEIFRI 97
Query: 319 VPIMSGLVLIGIALGFVLLRVEAAL 393 IM+GLVL+G+A+GFVLLR+EA++ Sbjct: 98 AAIMNGLVLVGVAVGFVLLRIEASV 122
>tr|A9PFI7|A9PFI7_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 122
Score = 65.1 bits (157), Expect = 2e-09 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 2/106 (1%) Frame = +1
Query: 76 PSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAV--LAHXX 249 P++ A + K + V+ + SF G+K+ + + LGLS +E+ FA+ V L Sbjct: 11 PTLVASAVSSPKRKQTNVNYITGLNSFGGLKAHNSVSSLGLSVGSEQSFAKIVSSLKAPS 70
Query: 250 XXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEA 387 C+ EIFR+ +M+GLVL+G+A+GFVLLR+EA Sbjct: 71 KGKGGSGGALSSTCSNVGEIFRIAAVMNGLVLVGVAVGFVLLRIEA 116
>tr|B6TLU8|B6TLU8_MAIZE Plastoquinol-plastocyanin reductase OS=Zea mays PE=4 SV=1 Length = 117
Score = 63.5 bits (153), Expect = 5e-09 Identities = 39/108 (36%), Positives = 61/108 (56%) Frame = +1
Query: 64 LSAMPSMAAVTRADCKPSRRAVSLGRKMKSFSGMKSESRIGRLGLSESTEEHFARAVLAH 243 ++ PS+AA A +P+ V+ M ++SG+K +++ LG+ ++ + FA+ V + Sbjct: 6 VATAPSLAAPA-AKRRPAA-GVTYVEGMNAYSGLKGLNKVTMLGVRKTADYSFAKVVASL 63
Query: 244 XXXXXXXXXXXXXXXCNVADEIFRVVPIMSGLVLIGIALGFVLLRVEA 387 N A EIFR+ MSGLVL+G+A+GFVLLRVEA Sbjct: 64 SPAGRKRRGGAFGAQMNAAAEIFRIAATMSGLVLVGVAVGFVLLRVEA 111
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