| DK961057 |
| Clone id |
TST39A01NGRL0009_B10 |
| Library |
TST39 |
| Length |
636 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_B10. 5' end sequence. |
| Accession |
DK961057 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
- |
| Sequence |
CAAGAACTCTCCATTGGAACTTGATGCTGCAGATATGGGGACGCAGGAGTCTGATTTGCA
AGTAGCTGTCTCTGCACTCATCGAAAGAGAAATCTTTCATGCTCCATGCGCTGATTACGT
GGAGAAGTATGAGACCAAGCTTCTTGATGCAGGCTCTCGGCAGAAAGCTATAAGCTGGCT
CTTCAAGGTTCGGGCTTTTTACAATTTTGGCCCACTGACAGCCGCTCTGTCTATCAATTA
TCTTGATCGCTTCCTCTCCCGTTGCCAGTTTCCGATGGGGAAATCTTGGATGATTCAACT
TCTATCTGTTGCATGTCTATCTCTGGCTGCCAAAATGGAAGAAGTAGACGTCCCGATTCT
TCTTGAGCTTCAGGTTGCACCTGATTGTCTCTTTAAACCTGAGACCATACAGAGGATGGA
ATTACTAGTACTCAGCACACTTGAATGGCGTGTGAGCTCTGTAACACCATTTTCTTATGT
GGATTACTTTCTTTGCAAGTGCAGACTTTTTGGAAATGGGACCGGCCGGGCTATTCTAGT
TCGTATCAGTGATTTGATTCTCTCTGCAATGCAAGATATGAGGTTTCTTGCCTACCAGTC
TTCATCTATGGCTGCTGCAGCCTTTCTCTGTGCAGC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q4KYM5 |
| Definition |
sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica |
| Align length |
199 |
| Score (bit) |
175.0 |
| E-value |
2.0e-43 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961057|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_B10, 5'
(636 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonic... 175 2e-43
sp|Q6YXH8|CCD41_ORYSJ Cyclin-D4-1 OS=Oryza sativa subsp. japonic... 174 3e-43
sp|P42751|CCD11_ARATH Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYC... 173 8e-43
sp|Q8LGA1|CCD41_ARATH Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYC... 167 5e-41
sp|Q8LHA8|CCD22_ORYSJ Cyclin-D2-2 OS=Oryza sativa subsp. japonic... 166 1e-40
sp|Q0J233|CCD21_ORYSJ Cyclin-D2-1 OS=Oryza sativa subsp. japonic... 165 2e-40
sp|P42752|CCD21_ARATH Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYC... 160 5e-39
sp|Q0WQN9|CCD42_ARATH Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYC... 157 4e-38
sp|Q10K98|CCD23_ORYSJ Putative cyclin-D2-3 OS=Oryza sativa subsp... 149 1e-35
sp|Q67V81|CCD11_ORYSJ Cyclin-D1-1 OS=Oryza sativa subsp. japonic... 147 4e-35
sp|Q9SN11|CCD33_ARATH Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYC... 140 7e-33
sp|Q8H339|CCD12_ORYSJ Cyclin-D1-2 OS=Oryza sativa subsp. japonic... 140 7e-33
sp|P42753|CCD31_ARATH Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYC... 136 8e-32
sp|Q69QB8|CCD31_ORYSJ Cyclin-D3-1 OS=Oryza sativa subsp. japonic... 134 4e-31
sp|Q9FGQ7|CCD32_ARATH Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYC... 132 2e-30
sp|Q2V3B2|CCD51_ARATH Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYC... 117 6e-26
sp|Q10QA2|CCD53_ORYSJ Cyclin-D5-3 OS=Oryza sativa subsp. japonic... 111 3e-24
sp|Q2QMW1|CCD52_ORYSJ Cyclin-D5-2 OS=Oryza sativa subsp. japonic... 104 4e-22
sp|Q0J3H7|CCD32_ORYSJ Cyclin-D3-2 OS=Oryza sativa subsp. japonic... 103 6e-22
sp|Q9ZR04|CCD61_ARATH Putative cyclin-D6-1 OS=Arabidopsis thalia... 103 1e-21
sp|Q0DQA9|CCD51_ORYSJ Cyclin-D5-1 OS=Oryza sativa subsp. japonic... 101 3e-21
sp|Q69S43|CCD61_ORYSJ Cyclin-D6-1 OS=Oryza sativa subsp. japonic... 97 5e-20
sp|Q9LZM0|CCD71_ARATH Putative cyclin-D7-1 OS=Arabidopsis thalia... 92 2e-18
sp|Q53MB7|CCD71_ORYSJ Putative cyclin-D7-1 OS=Oryza sativa subsp... 84 5e-16
sp|P50755|CCND1_XENLA G1/S-specific cyclin-D1 OS=Xenopus laevis ... 78 3e-14
sp|P55169|CCND1_CHICK G1/S-specific cyclin-D1 OS=Gallus gallus G... 75 3e-13
sp|Q5SCB5|CCND_OSTTA Cyclin-D OS=Ostreococcus tauri GN=CycD PE=3... 75 4e-13
sp|Q90459|CCND1_DANRE G1/S-specific cyclin-D1 OS=Danio rerio GN=... 75 4e-13
sp|P25322|CCND1_MOUSE G1/S-specific cyclin-D1 OS=Mus musculus GN... 74 6e-13
sp|P39948|CCND1_RAT G1/S-specific cyclin-D1 OS=Rattus norvegicus... 74 8e-13
>sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica
GN=CYCD4-2 PE=2 SV=2
Length = 383
Score = 175 bits (443), Expect = 2e-43
Identities = 100/199 (50%), Positives = 133/199 (66%), Gaps = 3/199 (1%)
Frame = +2
Query: 32 DMGTQESDLQVAVSALIEREIFHAPCADYVEKYETKL--LDAGSRQKAISWLFKVRAFYN 205
DM ++S+ V++L+ERE H P ADY E+ +D R +AI W+++V +YN
Sbjct: 68 DMFPRQSE--ECVASLVEREQAHMPRADYGERLRGGGGDVDLRVRSEAIGWIWEVYTYYN 125
Query: 206 FGPLTAALSINYLDRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQVA-P 382
F +TA L++NYLDRFLS+ + P G+ WM QLLSVACLS+AAKMEE VP L+LQ+ P
Sbjct: 126 FSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEP 185
Query: 383 DCLFKPETIQRMELLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLIL 562
LF+ ETI RMELLVL+ L WR+ +VTPFSY+DYFL K GN R+ L+R S+LIL
Sbjct: 186 RFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLN-SGNAAPRSWLLRSSELIL 244
Query: 563 SAMQDMRFLAYQSSSMAAA 619
FL ++ S +AAA
Sbjct: 245 RIAAGTGFLEFRPSEIAAA 263
>sp|Q6YXH8|CCD41_ORYSJ Cyclin-D4-1 OS=Oryza sativa subsp. japonica
GN=CYCD4-1 PE=2 SV=2
Length = 356
Score = 174 bits (442), Expect = 3e-43
Identities = 99/189 (52%), Positives = 127/189 (67%), Gaps = 5/189 (2%)
Frame = +2
Query: 68 VSALIEREIFHAPCADYVEKYETKL----LDAGSRQKAISWLFKVRAFYNFGPLTAALSI 235
V+ L+E E H P DY E+ LD R AI W++KV ++Y+F PLTA L++
Sbjct: 69 VARLVETEADHMPREDYAERLRAGGGDGDLDLRVRMDAIDWIWKVHSYYSFAPLTACLAV 128
Query: 236 NYLDRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQVAPD-CLFKPETIQ 412
NYLDRFLS Q P GK WM QLL+VACLSLAAKMEE DVP L+LQV + +F+ +TIQ
Sbjct: 129 NYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQ 188
Query: 413 RMELLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSAMQDMRFLA 592
RMELLVLSTL+WR+ +VTPFSYVDYFL + +GR+ L+ S+LIL + L
Sbjct: 189 RMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLS-SELILCIARGTECLG 247
Query: 593 YQSSSMAAA 619
++ S +AAA
Sbjct: 248 FRPSEIAAA 256
>sp|P42751|CCD11_ARATH Cyclin-D1-1 OS=Arabidopsis thaliana
GN=CYCD1-1 PE=1 SV=3
Length = 339
Score = 173 bits (438), Expect = 8e-43
Identities = 90/190 (47%), Positives = 130/190 (68%), Gaps = 1/190 (0%)
Frame = +2
Query: 65 AVSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFGPLTAALSINYL 244
+++ IE E P DY+ +++T+ LDA +R+ +++W+ KV+A+YNF PLTA L++NY+
Sbjct: 51 SIACFIEDERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYM 110
Query: 245 DRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQVA-PDCLFKPETIQRME 421
DRFL + P W +QLL+VACLSLAAKMEE+ VP L + QVA LF+ +TI+RME
Sbjct: 111 DRFLYARRLPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRME 170
Query: 422 LLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSAMQDMRFLAYQS 601
LLVLS L+WR+ SVTPF ++ +F K G G + +++ILS +++ FL Y
Sbjct: 171 LLVLSVLDWRLRSVTPFDFISFFAYKIDPSGTFLG-FFISHATEIILSNIKEASFLEYWP 229
Query: 602 SSMAAAAFLC 631
SS+AAAA LC
Sbjct: 230 SSIAAAAILC 239
>sp|Q8LGA1|CCD41_ARATH Cyclin-D4-1 OS=Arabidopsis thaliana
GN=CYCD4-1 PE=1 SV=2
Length = 308
Score = 167 bits (422), Expect = 5e-41
Identities = 85/209 (40%), Positives = 134/209 (64%), Gaps = 2/209 (0%)
Frame = +2
Query: 8 SPLELDAADMGTQESDLQVAVSALIEREIFHAPCADYVEKYETKLLDAG-SRQKAISWLF 184
+P+E+ MG +S+ + + ++E+E H P DY+++ + LD R+ A++W++
Sbjct: 27 TPIEISIPQMGFSQSESEEIIMEMVEKEKQHLPSDDYIKRLRSGDLDLNVGRRDALNWIW 86
Query: 185 KVRAFYNFGPLTAALSINYLDRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILL 364
K + FGPL L++NYLDRFLS P GK W++QLL+VACLSLAAK+EE +VP+L+
Sbjct: 87 KACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEETEVPMLI 146
Query: 365 ELQVA-PDCLFKPETIQRMELLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILV 541
+LQV P +F+ +++QRMELLVL+ L+WR+ ++TP SY+ YFL K ++
Sbjct: 147 DLQVGDPQFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKCDQEPSNTLIS 206
Query: 542 RISDLILSAMQDMRFLAYQSSSMAAAAFL 628
R +I S + + FL ++ S +AAA L
Sbjct: 207 RSLQVIASTTKGIDFLEFRPSEVAAAVAL 235
>sp|Q8LHA8|CCD22_ORYSJ Cyclin-D2-2 OS=Oryza sativa subsp. japonica
GN=CYCD2-2 PE=2 SV=1
Length = 356
Score = 166 bits (419), Expect = 1e-40
Identities = 88/188 (46%), Positives = 125/188 (66%), Gaps = 1/188 (0%)
Frame = +2
Query: 68 VSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFGPLTAALSINYLD 247
V+ L+E+E+ H P Y+EK E L+ R+ AI W+ KV ++YNFGPL+ L++NYLD
Sbjct: 65 VALLVEKEMDHQPQRGYLEKLELGGLECSWRKDAIDWICKVHSYYNFGPLSLYLAVNYLD 124
Query: 248 RFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQV-APDCLFKPETIQRMEL 424
RFLS P +SWM QLLSV+CLSLA KMEE VP+ ++LQV + +F+ I+RMEL
Sbjct: 125 RFLSSFNLPHDESWMQQLLSVSCLSLATKMEETVVPLPMDLQVFDAEYVFEARHIKRMEL 184
Query: 425 LVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSAMQDMRFLAYQSS 604
+V+ TL+WR+ +VTPFS++ YFL K G + SDL + ++D RFL+++ S
Sbjct: 185 IVMKTLKWRLQAVTPFSFIGYFLDKFN-EGKPPSYTLASWCSDLTVGTLKDSRFLSFRPS 243
Query: 605 SMAAAAFL 628
+AAA L
Sbjct: 244 EIAAAVVL 251
>sp|Q0J233|CCD21_ORYSJ Cyclin-D2-1 OS=Oryza sativa subsp. japonica
GN=CYCD2-1 PE=3 SV=2
Length = 308
Score = 165 bits (417), Expect = 2e-40
Identities = 90/208 (43%), Positives = 135/208 (64%), Gaps = 4/208 (1%)
Frame = +2
Query: 23 DAADMGTQESDLQVAVSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFY 202
+ +G +E +++ LI E ++P +DY ++ ++ +D +R +++SW+ KV+ +
Sbjct: 37 ECCSVGGEELYSAASIAELIGGEAEYSPRSDYPDRLRSRSIDPAARAESVSWILKVQEYN 96
Query: 203 NFGPLTAALSINYLDRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQVAP 382
F PLTA L++NY+DRFLS P G+ W +QLL+VACLSLAAKMEE VP LL+LQV
Sbjct: 97 GFLPLTAYLAVNYMDRFLSLRHLPEGQGWAMQLLAVACLSLAAKMEETLVPSLLDLQV-- 154
Query: 383 DC---LFKPETIQRMELLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISD 553
+C +F+P TI RME L+L+ L WR+ SVTPF+++D+F CK IS+
Sbjct: 155 ECSRYVFEPRTICRMEFLILTALNWRLRSVTPFTFIDFFACK--------------HISN 200
Query: 554 -LILSAMQDMRFLAYQSSSMAAAAFLCA 634
++ +A D++FL + SSMAAAA LCA
Sbjct: 201 AMVQNANSDIQFLDHCPSSMAAAAVLCA 228
>sp|P42752|CCD21_ARATH Cyclin-D2-1 OS=Arabidopsis thaliana
GN=CYCD2-1 PE=1 SV=3
Length = 361
Score = 160 bits (405), Expect = 5e-39
Identities = 87/198 (43%), Positives = 128/198 (64%), Gaps = 2/198 (1%)
Frame = +2
Query: 35 MGTQESDL-QVAVSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFG 211
MG+ S L + + ++ REI P DYV++ + LD R +A+ W+ KV A Y+FG
Sbjct: 55 MGSSSSSLSEDRIKEMLVREIEFCPGTDYVKRLLSGDLDLSVRNQALDWILKVCAHYHFG 114
Query: 212 PLTAALSINYLDRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQVA-PDC 388
L LS+NYLDRFL+ + P K W QLL+V+CLSLA+KMEE DVP +++LQV P
Sbjct: 115 HLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKF 174
Query: 389 LFKPETIQRMELLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSA 568
+F+ +TI+RMELLV++TL WR+ ++TPFS++DYF+ K ++ R S IL+
Sbjct: 175 VFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVDK---ISGHVSENLIYRSSRFILNT 231
Query: 569 MQDMRFLAYQSSSMAAAA 622
+ + FL ++ S +AAAA
Sbjct: 232 TKAIEFLDFRPSEIAAAA 249
>sp|Q0WQN9|CCD42_ARATH Cyclin-D4-2 OS=Arabidopsis thaliana
GN=CYCD4-2 PE=1 SV=2
Length = 298
Score = 157 bits (397), Expect = 4e-38
Identities = 85/188 (45%), Positives = 122/188 (64%), Gaps = 1/188 (0%)
Frame = +2
Query: 68 VSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFGPLTAALSINYLD 247
V +IE+E H+P DY+++ LD R +A+ W++K FGPL L++NYLD
Sbjct: 39 VREMIEKERQHSPRDDYLKRLRNGDLDFNVRIQALGWIWKACEELQFGPLCICLAMNYLD 98
Query: 248 RFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQV-APDCLFKPETIQRMEL 424
RFLS P GK+W +QLL+VACLSLAAK+EE +VP L++LQV AP +F+ +++QRMEL
Sbjct: 99 RFLSVHDLPSGKAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAPMFVFEAKSVQRMEL 158
Query: 425 LVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSAMQDMRFLAYQSS 604
LVL+ L WR+ +VTP SYV YFL K + ++ R +I S + + FL +++S
Sbjct: 159 LVLNVLRWRLRAVTPCSYVRYFLSKINGYDQEPHSRLVTRSLQVIASTTKGIDFLEFRAS 218
Query: 605 SMAAAAFL 628
+AAA L
Sbjct: 219 EIAAAVAL 226
>sp|Q10K98|CCD23_ORYSJ Putative cyclin-D2-3 OS=Oryza sativa subsp.
japonica GN=CYCD2-3 PE=3 SV=1
Length = 405
Score = 149 bits (376), Expect = 1e-35
Identities = 85/193 (44%), Positives = 122/193 (63%), Gaps = 6/193 (3%)
Frame = +2
Query: 68 VSALIEREI---FHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFGPLTAALSIN 238
V + +E+E+ +Y+ K ++ R AI W+ KV+A+Y+FGPL A L++N
Sbjct: 71 VGSFMEKEVEQMVETARGEYLTKLSNGGIELSCRIAAIDWICKVQAYYSFGPLCAYLAVN 130
Query: 239 YLDRFLSRCQFPMGKS--WMIQLLSVACLSLAAKMEEVDVPILLELQVA-PDCLFKPETI 409
YLDRFLS +F + WM QLL VACLSLAAKMEE P L+LQV P+ +F ETI
Sbjct: 131 YLDRFLSSVEFSVTNDMPWMQQLLIVACLSLAAKMEETAAPGTLDLQVCNPEYVFDAETI 190
Query: 410 QRMELLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSAMQDMRFL 589
RME++VL+TL+WR+ +VTPF+Y+ +FL K GN ++ R +++ILS M+ FL
Sbjct: 191 HRMEIIVLTTLKWRMQAVTPFTYIGHFLDKIN-EGNRITSELISRCTEIILSTMKATVFL 249
Query: 590 AYQSSSMAAAAFL 628
++ S +A A L
Sbjct: 250 RFRPSEIATAVAL 262
>sp|Q67V81|CCD11_ORYSJ Cyclin-D1-1 OS=Oryza sativa subsp. japonica
GN=CYCD1-1 PE=3 SV=1
Length = 363
Score = 147 bits (371), Expect = 4e-35
Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Frame = +2
Query: 164 KAISWLFKVRAFYNFGPLTAALSINYLDRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEE 343
+++SW+ KVR+ + F P TA L+++Y+DRF+S P W QLL VACLSLAAKMEE
Sbjct: 127 ESVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLP-DHGWASQLLCVACLSLAAKMEE 185
Query: 344 VDVPILLELQV-APDCLFKPETIQRMELLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNG 520
P LL+LQ+ +F+P TIQRMEL+VL L+WR+ SVTPF++VD+F CK G
Sbjct: 186 SSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKVGSSGR- 244
Query: 521 TGRAILVRISDLILSAMQDMRFLAYQSSSMAAAAFLCA 634
+ R + +R +ILSA+ ++ FL + +SSMAAAA L A
Sbjct: 245 SSRILALRACQIILSAIHELEFLNHCASSMAAAAVLFA 282
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
Q8GS62 |
| Definition |
tr|Q8GS62|Q8GS62_PHYPA Cyclin D OS=Physcomitrella patens |
| Align length |
191 |
| Score (bit) |
201.0 |
| E-value |
2.0e-50 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961057|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_B10, 5'
(636 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|Q8GS62|Q8GS62_PHYPA Cyclin D OS=Physcomitrella patens GN=cycD... 201 2e-50
tr|A9TXI3|A9TXI3_PHYPA Predicted protein OS=Physcomitrella paten... 201 2e-50
tr|A9RRR5|A9RRR5_PHYPA Predicted protein OS=Physcomitrella paten... 200 5e-50
tr|A8Y902|A8Y902_POPTR D1-type cyclin OS=Populus trichocarpa GN=... 182 1e-44
tr|Q8GVE0|Q8GVE0_HELTU Cyclin D1 OS=Helianthus tuberosus GN=CycD... 181 3e-44
tr|A7NUP9|A7NUP9_VITVI Chromosome chr18 scaffold_1, whole genome... 178 2e-43
tr|B6TIH7|B6TIH7_MAIZE Cyclin delta-2 OS=Zea mays PE=2 SV=1 177 6e-43
tr|A8Y903|A8Y903_POPTR D1-type cyclin OS=Populus trichocarpa GN=... 177 6e-43
tr|Q5XLI2|Q5XLI2_SACOF D-type cyclin OS=Saccharum officinarum GN... 176 1e-42
tr|A8Y908|A8Y908_POPTR D2/4-type cyclin OS=Populus trichocarpa G... 176 1e-42
tr|A7Q2I3|A7Q2I3_VITVI Chromosome chr1 scaffold_46, whole genome... 175 2e-42
tr|B7E976|B7E976_ORYSJ cDNA clone:001-123-E03, full insert seque... 174 3e-42
tr|A2Z257|A2Z257_ORYSI Putative uncharacterized protein OS=Oryza... 174 3e-42
tr|B8BBS7|B8BBS7_ORYSI Putative uncharacterized protein OS=Oryza... 174 4e-42
tr|A8Y907|A8Y907_POPTR D2/4-type cyclin (Fragment) OS=Populus tr... 174 5e-42
tr|B6UB23|B6UB23_MAIZE Cyclin delta-2 OS=Zea mays PE=2 SV=1 171 3e-41
tr|P93103|P93103_CHERU Cyclin-D like protein OS=Chenopodium rubr... 171 4e-41
tr|B6TJ83|B6TJ83_MAIZE Cyclin delta-2 OS=Zea mays PE=2 SV=1 171 4e-41
tr|A5AX76|A5AX76_VITVI Putative uncharacterized protein OS=Vitis... 170 8e-41
tr|Q6T2Z7|Q6T2Z7_SOYBN Cyclin d2 OS=Glycine max PE=2 SV=1 169 1e-40
tr|A7QL87|A7QL87_VITVI Chromosome chr3 scaffold_117, whole genom... 169 2e-40
tr|A5ANW3|A5ANW3_VITVI Putative uncharacterized protein OS=Vitis... 169 2e-40
tr|Q8S524|Q8S524_MAIZE D-type cyclin OS=Zea mays GN=cycD2 PE=2 SV=1 168 3e-40
tr|Q9ZRX9|Q9ZRX9_TOBAC Cyclin D2.1 protein OS=Nicotiana tabacum ... 167 6e-40
tr|B7E8W7|B7E8W7_ORYSJ cDNA clone:001-119-D07, full insert seque... 166 1e-39
tr|A2YNT0|A2YNT0_ORYSI Putative uncharacterized protein OS=Oryza... 166 1e-39
tr|Q309F0|Q309F0_MAIZE D-type cyclin OS=Zea mays PE=2 SV=1 164 3e-39
tr|Q5XLI1|Q5XLI1_SACOF D-type cyclin OS=Saccharum officinarum GN... 163 7e-39
tr|B4FY72|B4FY72_MAIZE Putative uncharacterized protein OS=Zea m... 162 1e-38
tr|A8Y904|A8Y904_POPTR D1-type cyclin OS=Populus trichocarpa GN=... 162 1e-38
>tr|Q8GS62|Q8GS62_PHYPA Cyclin D OS=Physcomitrella patens GN=cycD
PE=2 SV=1
Length = 360
Score = 201 bits (512), Expect = 2e-50
Identities = 105/191 (54%), Positives = 140/191 (73%), Gaps = 1/191 (0%)
Frame = +2
Query: 65 AVSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFGPLTAALSINYL 244
A++ L+ +E P ADY+E+Y+++ L +R AI W+ KV +FYN+ PLT AL++NY+
Sbjct: 52 AIATLLMKEAQFMPEADYLERYQSRKLSLEARLAAIEWILKVHSFYNYSPLTVALAVNYM 111
Query: 245 DRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQV-APDCLFKPETIQRME 421
DRFLSR FP GK WM+QLLSVAC+SLAAKMEE DVPILL+ QV + +F+ TIQRME
Sbjct: 112 DRFLSRYYFPEGKEWMLQLLSVACISLAAKMEESDVPILLDFQVEQEEHIFEAHTIQRME 171
Query: 422 LLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSAMQDMRFLAYQS 601
LLVLSTLEWR+S VTPFSYVDYF K + + RA+L R+S++IL +++ L Y
Sbjct: 172 LLVLSTLEWRMSGVTPFSYVDYFFHKLGV-SDLLLRALLSRVSEIILKSIRVTTSLQYLP 230
Query: 602 SSMAAAAFLCA 634
S +AAA+ +CA
Sbjct: 231 SVVAAASIICA 241
>tr|A9TXI3|A9TXI3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_226408 PE=3 SV=1
Length = 360
Score = 201 bits (512), Expect = 2e-50
Identities = 105/191 (54%), Positives = 140/191 (73%), Gaps = 1/191 (0%)
Frame = +2
Query: 65 AVSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFGPLTAALSINYL 244
A++ L+ +E P ADY+E+Y+++ L +R AI W+ KV +FYN+ PLT AL++NY+
Sbjct: 52 AIATLLMKEAQFMPEADYLERYQSRKLSLEARLAAIEWILKVHSFYNYSPLTVALAVNYM 111
Query: 245 DRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQV-APDCLFKPETIQRME 421
DRFLSR FP GK WM+QLLSVAC+SLAAKMEE DVPILL+ QV + +F+ TIQRME
Sbjct: 112 DRFLSRYYFPEGKEWMLQLLSVACISLAAKMEESDVPILLDFQVEQEEHIFEAHTIQRME 171
Query: 422 LLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSAMQDMRFLAYQS 601
LLVLSTLEWR+S VTPFSYVDYF K + + RA+L R+S++IL +++ L Y
Sbjct: 172 LLVLSTLEWRMSGVTPFSYVDYFFHKLGV-SDLLLRALLSRVSEIILKSIRVTTSLQYLP 230
Query: 602 SSMAAAAFLCA 634
S +AAA+ +CA
Sbjct: 231 SVVAAASIICA 241
>tr|A9RRR5|A9RRR5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_160648 PE=4 SV=1
Length = 362
Score = 200 bits (509), Expect = 5e-50
Identities = 106/200 (53%), Positives = 143/200 (71%), Gaps = 1/200 (0%)
Frame = +2
Query: 32 DMGTQESDLQVAVSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFG 211
D ++ D AVS L+ +E + P DY E+Y ++ L G+R A+ W+ KV+AFYN+
Sbjct: 46 DFSVEDDD---AVSTLLLKEAQYMPEPDYSERYHSRELSNGARLDAVRWIQKVQAFYNYS 102
Query: 212 PLTAALSINYLDRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQV-APDC 388
PLT AL++NY+DRFLSR P GK WM+QLLSV+C+SLAAKMEE +VPILL+LQV +
Sbjct: 103 PLTVALAVNYMDRFLSRHHLPEGKDWMLQLLSVSCISLAAKMEESEVPILLDLQVEQQEH 162
Query: 389 LFKPETIQRMELLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSA 568
+F+ TIQRMELLVLSTLEWR+S VTPFSY+DYF K + RA+L R+S++I+ A
Sbjct: 163 IFEAHTIQRMELLVLSTLEWRMSVVTPFSYIDYFFHKLGI-SELLLRALLSRVSEIIMKA 221
Query: 569 MQDMRFLAYQSSSMAAAAFL 628
++D FL Y S +AAA+ +
Sbjct: 222 IEDTTFLQYLPSVVAAASLI 241
>tr|A8Y902|A8Y902_POPTR D1-type cyclin OS=Populus trichocarpa
GN=CYCD1;1 PE=2 SV=1
Length = 328
Score = 182 bits (462), Expect = 1e-44
Identities = 96/204 (47%), Positives = 140/204 (68%), Gaps = 1/204 (0%)
Frame = +2
Query: 26 AADMGTQESDLQVAVSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYN 205
++D+ + + + +++ IE E P DY +++++ LDA +R+++++W+ KV+A Y
Sbjct: 28 SSDLESHDFVEESSIAGFIEDERNFVPGYDYFSRFQSQSLDASAREQSVAWILKVQACYG 87
Query: 206 FGPLTAALSINYLDRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQV-AP 382
F PLTA LS+NYLDRFL + P W +QLLSVACLSLAAKMEE VP LL+LQV
Sbjct: 88 FQPLTAYLSVNYLDRFLYSRRLPQTDGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGA 147
Query: 383 DCLFKPETIQRMELLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLIL 562
+F+P TI+RMELLVL L+WR+ S+TPFS+ +F CK G TG ++ R +++IL
Sbjct: 148 KYIFEPRTIRRMELLVLGVLDWRLRSITPFSFTGFFACKLDPAGAYTG-FLISRATEIIL 206
Query: 563 SAMQDMRFLAYQSSSMAAAAFLCA 634
S +++ FL Y+ SS+AAAA LCA
Sbjct: 207 SNIKEASFLEYRPSSIAAAAILCA 230
>tr|Q8GVE0|Q8GVE0_HELTU Cyclin D1 OS=Helianthus tuberosus GN=CycD1;1
PE=2 SV=1
Length = 315
Score = 181 bits (459), Expect = 3e-44
Identities = 94/195 (48%), Positives = 135/195 (69%), Gaps = 1/195 (0%)
Frame = +2
Query: 53 DLQVAVSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFGPLTAALS 232
D +++ IE+E P DYVE++++++LDA +R+++++W+ KV+ FY F PLTA LS
Sbjct: 38 DFDDSIAEFIEQERKFVPGIDYVERFQSQVLDASAREESVAWILKVQRFYGFQPLTAYLS 97
Query: 233 INYLDRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQV-APDCLFKPETI 409
+NYLDRF+ FP+ W +QLLSVACLSLAAKMEE +P +L+LQV +F+P+TI
Sbjct: 98 VNYLDRFIYCRGFPVANGWPLQLLSVACLSLAAKMEETLIPSILDLQVEGAKYIFEPKTI 157
Query: 410 QRMELLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSAMQDMRFL 589
+RME LVLS L+WR+ SVTPFS++ +F K G TG ++ R + +ILS +Q+ L
Sbjct: 158 RRMEFLVLSVLDWRLRSVTPFSFIGFFSHKIDPSGMYTG-FLISRATQIILSNIQEASLL 216
Query: 590 AYQSSSMAAAAFLCA 634
Y S +AAA LCA
Sbjct: 217 EYWPSCIAAATILCA 231
>tr|A7NUP9|A7NUP9_VITVI Chromosome chr18 scaffold_1, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00015132001
PE=3 SV=1
Length = 355
Score = 178 bits (452), Expect = 2e-43
Identities = 97/185 (52%), Positives = 129/185 (69%), Gaps = 1/185 (0%)
Frame = +2
Query: 68 VSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFGPLTAALSINYLD 247
++ +IE+E H P ADY+ + + LD GSRQ + W+ K A + FGPL A L+INYLD
Sbjct: 69 LALMIEKESQHLPAADYLMRLRSGDLDIGSRQDVVGWIAKAHAHFGFGPLCAYLAINYLD 128
Query: 248 RFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQVAPD-CLFKPETIQRMEL 424
RFLS + P GK+WM QLL+VACLSLAAKMEE +VP+ L+LQVA +F+ TIQRMEL
Sbjct: 129 RFLSTYELPKGKAWMAQLLAVACLSLAAKMEENEVPLCLDLQVAESRFVFEARTIQRMEL 188
Query: 425 LVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSAMQDMRFLAYQSS 604
LVL TL+WR+ +VTPFS+VDYFL + +IL+ I LILS ++ + FL ++ S
Sbjct: 189 LVLRTLKWRMQAVTPFSFVDYFLRRINDDEFPARTSILLSI-QLILSTVKGIDFLEFRPS 247
Query: 605 SMAAA 619
+AAA
Sbjct: 248 EIAAA 252
>tr|B6TIH7|B6TIH7_MAIZE Cyclin delta-2 OS=Zea mays PE=2 SV=1
Length = 322
Score = 177 bits (448), Expect = 6e-43
Identities = 94/194 (48%), Positives = 132/194 (68%), Gaps = 4/194 (2%)
Frame = +2
Query: 65 AVSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFGPLTAALSINYL 244
+++ LI E ++P DY ++ ++ +D +R ++++W+ KV+ +Y F PLTA L++NY+
Sbjct: 44 SIAELIGGEAQYSPRPDYPDRLRSRSIDPAARAESVAWILKVQEYYGFLPLTAYLAVNYM 103
Query: 245 DRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQVAP----DCLFKPETIQ 412
DRFLS + P W +QLL+V CLSLAAKMEE VP LL+LQV DC F+P T+
Sbjct: 104 DRFLSLHRLPQEDGWAMQLLAVTCLSLAAKMEETLVPSLLDLQVEGTSRYDC-FEPGTVG 162
Query: 413 RMELLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSAMQDMRFLA 592
RMELLVL L WR+ SVTPF++VD+F CK G T R ++ R + +IL+AM D+ FL
Sbjct: 163 RMELLVLMALNWRLRSVTPFTFVDFFACKVDPGGRHT-RCLIARATQVILAAMHDVEFLD 221
Query: 593 YQSSSMAAAAFLCA 634
+ SSMAAAA LCA
Sbjct: 222 HCPSSMAAAAVLCA 235
>tr|A8Y903|A8Y903_POPTR D1-type cyclin OS=Populus trichocarpa
GN=CYCD1;2 PE=2 SV=1
Length = 327
Score = 177 bits (448), Expect = 6e-43
Identities = 93/191 (48%), Positives = 133/191 (69%), Gaps = 1/191 (0%)
Frame = +2
Query: 65 AVSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFGPLTAALSINYL 244
++++ IE E P DY+ +++++ LDA +R+++++W+ KV+A++ F PLTA LS+NYL
Sbjct: 41 SIASFIEDERNFVPGFDYLSRFQSQSLDASAREESVAWILKVQAYHGFQPLTAYLSVNYL 100
Query: 245 DRFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQV-APDCLFKPETIQRME 421
DRF + P W QLLSVACLSLAAKMEE VP LL+LQV +F+P TI+RME
Sbjct: 101 DRFFYSRRLPQTDGWPWQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYIFEPRTIRRME 160
Query: 422 LLVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSAMQDMRFLAYQS 601
LLVLS L+WR+ S+TPFS+ +F CK G G ++ R +++ILS +++ FL Y
Sbjct: 161 LLVLSVLDWRLRSITPFSFTGFFACKLDPTGAYIG-FLISRATEIILSNIKEASFLEYWP 219
Query: 602 SSMAAAAFLCA 634
SS+AAAA LCA
Sbjct: 220 SSIAAAAILCA 230
>tr|Q5XLI2|Q5XLI2_SACOF D-type cyclin OS=Saccharum officinarum
GN=CycD2.1 PE=2 SV=1
Length = 343
Score = 176 bits (446), Expect = 1e-42
Identities = 94/185 (50%), Positives = 124/185 (67%), Gaps = 1/185 (0%)
Frame = +2
Query: 68 VSALIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFGPLTAALSINYLD 247
V+ +E E H P DY E+ +D R A+ W++KV A+Y FGPLTA L++NYLD
Sbjct: 58 VAGFVEAEAAHMPREDYAERLRGGGMDLRVRMDAVDWIWKVHAYYGFGPLTACLAVNYLD 117
Query: 248 RFLSRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQVA-PDCLFKPETIQRMEL 424
RFLS Q P GK+W QLLSVACLSLAAKMEE VP L+LQ+ +F+ +TIQRMEL
Sbjct: 118 RFLSLYQLPEGKAWTTQLLSVACLSLAAKMEETYVPPSLDLQIGDARYVFEAKTIQRMEL 177
Query: 425 LVLSTLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSAMQDMRFLAYQSS 604
LVLSTL+WR+ +VTPFSY+DYFL + G+ R ++R ++LIL + L ++ S
Sbjct: 178 LVLSTLKWRMQAVTPFSYIDYFLHRLN-GGDAPSRRAVLRSAELILCTARGTHCLDFRPS 236
Query: 605 SMAAA 619
+AAA
Sbjct: 237 EIAAA 241
>tr|A8Y908|A8Y908_POPTR D2/4-type cyclin OS=Populus trichocarpa
GN=CYCD2;2 PE=2 SV=1
Length = 319
Score = 176 bits (445), Expect = 1e-42
Identities = 89/182 (48%), Positives = 129/182 (70%), Gaps = 1/182 (0%)
Frame = +2
Query: 77 LIEREIFHAPCADYVEKYETKLLDAGSRQKAISWLFKVRAFYNFGPLTAALSINYLDRFL 256
++E+E H P DY+++ L G+R++A+ W+ KV A + FGPL A LS+NYLDRFL
Sbjct: 66 MVEKECQHLPSGDYLKRLRNGDLGLGARKEAVDWIAKVNAHFGFGPLCAYLSVNYLDRFL 125
Query: 257 SRCQFPMGKSWMIQLLSVACLSLAAKMEEVDVPILLELQVAPD-CLFKPETIQRMELLVL 433
S + P G +WM+QLL VACLSLAAKMEE +VP+ L+LQV +F+ TIQRMELLVL
Sbjct: 126 SAYELPKGNAWMMQLLGVACLSLAAKMEETEVPLSLDLQVGESRFVFEARTIQRMELLVL 185
Query: 434 STLEWRVSSVTPFSYVDYFLCKCRLFGNGTGRAILVRISDLILSAMQDMRFLAYQSSSMA 613
STL+WR+ ++TPFS++DYFL K + R+++++ LILS ++ + F+ ++ S +A
Sbjct: 186 STLDWRMHAITPFSFIDYFLGKI-INDQTPPRSLILQSILLILSTIKGIYFMEFRPSEIA 244
Query: 614 AA 619
AA
Sbjct: 245 AA 246
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