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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961066
Clone id TST39A01NGRL0009_B19
Library
Length 224
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_B19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGAGGTTTCGCATCGTCTGACACGTAACCCGTAACACTGTCATAACTAGTGTTGGTGCTA
GGTTAAGCTCTAATCTGAACTTGGACTACCATCAGCTGGGGTAATATTCAGCATGCGGGG
TGGGTTTGAAAATGATGTGTTCTAGCAATTTGATTCTTTCAGACAACAGTGATATTATCG
GATGACGGAGATGACATAGGAGGGAAGCACAAGGCTCCCACTTC
■■Homology search results ■■ -
sp_hit_id P27671
Definition sp|P27671|RGRF1_MOUSE Ras-specific guanine nucleotide-releasing factor 1 OS=Mus musculus
Align length 32
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961066|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_B19, 5'
         (224 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27671|RGRF1_MOUSE Ras-specific guanine nucleotide-releasing ...    32   1.3  
sp|Q13972|RGRF1_HUMAN Ras-specific guanine nucleotide-releasing ...    31   2.2  
sp|P28818|RGRF1_RAT Ras-specific guanine nucleotide-releasing fa...    30   3.7  
sp|Q99JE4|RGRF2_RAT Ras-specific guanine nucleotide-releasing fa...    30   4.8  
sp|P70392|RGRF2_MOUSE Ras-specific guanine nucleotide-releasing ...    30   4.8  
sp|O14827|RGRF2_HUMAN Ras-specific guanine nucleotide-releasing ...    30   4.8  
sp|A2CEA7|RGRF2_DANRE Ras-specific guanine nucleotide-releasing ...    29   8.2  

>sp|P27671|RGRF1_MOUSE Ras-specific guanine nucleotide-releasing
            factor 1 OS=Mus musculus GN=Rasgrf1 PE=1 SV=2
          Length = 1262

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 184  HPIISLLSERIKLLEHIIFKPTPHAEYYPS*W 89
            HP + + +E++ LL+H++FK  P+ E++   W
Sbjct: 1026 HPALEI-AEQLTLLDHLVFKSIPYEEFFGQGW 1056


>sp|Q13972|RGRF1_HUMAN Ras-specific guanine nucleotide-releasing
            factor 1 OS=Homo sapiens GN=RASGRF1 PE=1 SV=1
          Length = 1275

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -2

Query: 166  LSERIKLLEHIIFKPTPHAEYYPS*W*SKFRLELNLAPTLVM 41
            ++E++ LL+H++FK  P+ E++   W    +LE N     +M
Sbjct: 1044 IAEQLTLLDHLVFKKIPYEEFFGQGW---MKLEKNERTPYIM 1082


>sp|P28818|RGRF1_RAT Ras-specific guanine nucleotide-releasing factor
            1 OS=Rattus norvegicus GN=Rasgrf1 PE=1 SV=1
          Length = 1244

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -2

Query: 166  LSERIKLLEHIIFKPTPHAEYYPS*W 89
            ++E++ LL+H++FK  P+ E++   W
Sbjct: 1013 IAEQLTLLDHLVFKSIPYEEFFGQGW 1038


>sp|Q99JE4|RGRF2_RAT Ras-specific guanine nucleotide-releasing factor
            2 OS=Rattus norvegicus GN=Rasgrf2 PE=1 SV=1
          Length = 1190

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 166  LSERIKLLEHIIFKPTPHAEYYPS*W 89
            L+E+I LL+HI+F+  P+ E+    W
Sbjct: 959  LAEQITLLDHIVFRSIPYEEFLGQGW 984


>sp|P70392|RGRF2_MOUSE Ras-specific guanine nucleotide-releasing
            factor 2 OS=Mus musculus GN=Rasgrf2 PE=1 SV=2
          Length = 1189

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 166  LSERIKLLEHIIFKPTPHAEYYPS*W 89
            L+E+I LL+HI+F+  P+ E+    W
Sbjct: 958  LAEQITLLDHIVFRSIPYEEFLGQGW 983


>sp|O14827|RGRF2_HUMAN Ras-specific guanine nucleotide-releasing
            factor 2 OS=Homo sapiens GN=RASGRF2 PE=1 SV=2
          Length = 1237

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 166  LSERIKLLEHIIFKPTPHAEYYPS*W 89
            L+E+I LL+H+IF+  P+ E+    W
Sbjct: 1006 LAEQITLLDHVIFRSIPYEEFLGQGW 1031


>sp|A2CEA7|RGRF2_DANRE Ras-specific guanine nucleotide-releasing
            factor 2 OS=Danio rerio GN=rasgrf2 PE=3 SV=1
          Length = 1244

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 166  LSERIKLLEHIIFKPTPHAEYYPS*W 89
            ++E+I LL+HI+F+  P+ E+    W
Sbjct: 1013 IAEQITLLDHIVFRSIPYEEFLGQGW 1038
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961066|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_B19, 5'
         (224 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******