DK961067
Clone id TST39A01NGRL0009_B20
Library
Length 695
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_B20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CTCAATCACACACCCACAAGTTCCATGTTGATACCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCACACACACACACACACACACAATCCATATTGAGGGATCCTGACTATTCTCT
CTCAGATATGTAATGATTTTGGTCCCCTCACAACCCTGATGATTTATGATATCCTCCCCC
CAAGGTACAAAAGAAGGGAGATTATTGCTTTGCTCTATAATCCAAAATAGTGAGCTTTCC
TCAATTGATTATAGATCCAATCCAGCAAGAGAGTACTAATTATATACTTGATATACATGC
AATCCTCTGAAGATGAGATTTGATCACTTTGGGTTTGCATCCTCTGTGAGTCTCATGGAG
ATGCCATACTCTAACATGTGCAACCCAGATCCTCATCCGAACGTCACGATTGCAAATGTC
ACGGGTTGCCCTGATACCCCACCGCATGACTTCGATGTTTACACATCTGAGAGTAGCCCT
CTAGCTGTTGGGGCTGAGTATATTGGCCATGGAAACTTGATCAGTACATCAGTAGACGTT
CTTCAACATGACTCCATGCTCATCGACATGGACCAACGCACAGCTAGTGCTGCCGCTGCA
TCATTTCAAGCTGCATCATGTGCAGGAAAGAGATGCTTGGAAATACCAGTACTTGGCTTT
GTCGACAGTTGCGTGCCAGAATCGTCTGCTGCATC
■■Homology search results ■■ -
sp_hit_id O80497
Definition sp|O80497|GUN15_ARATH Endoglucanase 15 OS=Arabidopsis thaliana
Align length 110
Score (bit) 32.0
E-value 3.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961067|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_B20, 5'
(695 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O80497|GUN15_ARATH Endoglucanase 15 OS=Arabidopsis thaliana G... 32 3.3
sp|Q1DHP3|SEC16_COCIM COPII coat assembly protein SEC16 OS=Cocci... 30 9.5

>sp|O80497|GUN15_ARATH Endoglucanase 15 OS=Arabidopsis thaliana
GN=At2g44570 PE=2 SV=1
Length = 492

Score = 32.0 bits (71), Expect = 3.3
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
Frame = +1

Query: 196 GRLLLCSIIQNSELSSIDY--RSNPAREY*LYT*YTCNPLKMRFDHFGFASSVSLMEMPY 369
G +L S + N + +DY SNP + + T P + H AS VS+ P
Sbjct: 372 GDVLQASDLLNLARAQVDYILGSNPKKMSYMVGYGTNYPKR---PHHRGASIVSIKNDPK 428

Query: 370 SNMCN---------PDPHPNVTIANVTGCPDTPPHDFDVYTSESSPLAVG 492
CN P P+PN+ + + G PD ++D Y E S G
Sbjct: 429 PVTCNGGFEAWYNNPKPNPNLLVGAIVGGPD----EYDAYGDERSDFQHG 474


>sp|Q1DHP3|SEC16_COCIM COPII coat assembly protein SEC16
OS=Coccidioides immitis GN=SEC16 PE=3 SV=1
Length = 1717

Score = 30.4 bits (67), Expect = 9.5
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +1

Query: 364 PYSNMCNPDPHPNVTIANVTGCPDTP---PHDFDVYT---SESSPLAVGAEYIGHGNLIS 525
PYSN+ P P P T + + P P P F Y+ +S+ + A Y+ +
Sbjct: 586 PYSNLSAPPPQPAPTTSRYSPQPPPPGTKPAPFPRYSPAPPQSACMTSSATYVSQSPTVQ 645

Query: 526 TSVDVL 543
+SV+ L
Sbjct: 646 SSVNAL 651


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961067|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_B20, 5'
(695 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******