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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961068
Clone id TST39A01NGRL0009_B21
Library
Length 577
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_B21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATTCTCGCATCCTCTCTCATAGACTCTCCCGCCATTCCTACCTACAGGTTTTGTTGTCGA
CCACTGCTGCTGGCTCGTCCTCTTCGTCCCCTCAGGATAGTTCTTCACAACAGTCGCAAT
CAATGGCTTCATCGGCGGTATTCTTCTTGTTCACTTTCACAGTGCTGGCCATGATGATGA
GTTTGGCCGACATGGCGTTGGCTCAGGGTGAATCTCCTGCCGCGGCTCCCGAGTCTGGGG
CTGCCTTCACGTCTCCCGATCTTGGAGTCCTTTCTTTGGCCTTTACCTCTCTCCTTTCCC
TCATTGCAATTTTGCTGAACTAAGGCTTGGCCCTTCCATGTGTCACTCAGACACACATAC
ATACGCTCAGATAGGTAGTTATTCTATGAGGCTTTCTCACGTGACATTTGTTCATTTGTT
ATTTGTGGCACTCTCTGATGTAAGGTTTGACGATACTCTAGTTTGTATAAATTTTGAGGT
TATTTGACATGTAGATTTGTAGTGTCCCCGTTCTATGAATTATGTTGCATGTTACTGGTT
GAGAAGAGAACATAAAAGACTTGAACTGAGCAAAACT
■■Homology search results ■■ -
sp_hit_id Q9UPT8
Definition sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens
Align length 59
Score (bit) 34.7
E-value 0.35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961068|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_B21, 5'
         (577 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein...    35   0.35 
sp|Q9R1D7|GBF1_CRIGR Golgi-specific brefeldin A-resistance guani...    32   1.7  
sp|Q9VIQ9|SICK_DROME Protein sickie OS=Drosophila melanogaster G...    32   2.3  
sp|Q9NEU2|SDA1_CAEEL Protein SDA1 homolog OS=Caenorhabditis eleg...    32   2.3  
sp|Q2VIS4|FILA2_MOUSE Filaggrin-2 OS=Mus musculus GN=Flg2 PE=2 SV=2    31   3.9  
sp|Q96DY2|IQCD_HUMAN IQ domain-containing protein D OS=Homo sapi...    30   8.6  

>sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein 4
           OS=Homo sapiens GN=ZC3H4 PE=1 SV=3
          Length = 1303

 Score = 34.7 bits (78), Expect = 0.35
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = -3

Query: 314 QNCNEGKERGKGQRKDSKIGRREGSPRLGSRGRRFTLSQRHVGQTHHHGQHCESEQEEY 138
           +   EG  RG+G R   +  R  GS R GSRGR      R  G+    G H E E++ Y
Sbjct: 228 RRAKEGSSRGRGSRGRGRGYRGRGS-RGGSRGRGMGRGSRGRGRGSMGGDHPEDEEDFY 285


>sp|Q9R1D7|GBF1_CRIGR Golgi-specific brefeldin A-resistance guanine
            nucleotide exchange factor 1 OS=Cricetulus griseus
            GN=GBF1 PE=2 SV=1
          Length = 1856

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -3

Query: 329  QALVQQNCNEGKERGKGQRKDSKIGRREGSPRLGSRGRRFTLSQRHVGQTHHHGQHCESE 150
            +A +   C    +RGK  + DSK  R +  P+ GS  RR   S +H       G H + E
Sbjct: 1423 EASLNGGCKSQDKRGKSHKYDSKGNRFKKKPKEGSVLRRPRTSSQH----GTRGGHSDEE 1478

Query: 149  QEE 141
            ++E
Sbjct: 1479 EDE 1481


>sp|Q9VIQ9|SICK_DROME Protein sickie OS=Drosophila melanogaster
            GN=sick PE=1 SV=3
          Length = 2197

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -3

Query: 320  VQQNCNEGKERGKGQRKDSKIGRREGSPRLGSRGRRFTLSQRHVGQTHHHGQHCESE 150
            +   C+  +++ K  +K   +  R    +  SR  + + + RHVG  HHH  H + E
Sbjct: 1419 ISSGCSAAQDKNKANKKKGWL--RSSFTKAFSRNAKISKTSRHVGH-HHHHNHSQQE 1472


>sp|Q9NEU2|SDA1_CAEEL Protein SDA1 homolog OS=Caenorhabditis elegans
           GN=pro-3 PE=1 SV=4
          Length = 801

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 6/43 (13%)
 Frame = -3

Query: 296 KERGKGQRKDSKIGRREG---SPRLGS---RGRRFTLSQRHVG 186
           K  GKG+++  K+G++ G   +P  GS   +  RFT+S+R++G
Sbjct: 6   KSPGKGEKRIGKVGKKNGKSNAPTEGSNSGKASRFTMSERNLG 48


>sp|Q2VIS4|FILA2_MOUSE Filaggrin-2 OS=Mus musculus GN=Flg2 PE=2 SV=2
          Length = 2362

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
 Frame = -3

Query: 314  QNCNEGKERGKGQRKDSKIGRREGSPRLG------SRGRRFT-LSQRHVGQTHHHGQ--- 165
            Q+ +   + G+GQ   S  GR   SPR        S G   + + QRH G  H HGQ   
Sbjct: 1641 QDSSRQPQAGQGQPSQSGSGR---SPRRSPVHPESSEGEEHSVIPQRHSGSGHSHGQGQV 1697

Query: 164  HCESEQEE 141
            H E +Q E
Sbjct: 1698 HAEHQQRE 1705


>sp|Q96DY2|IQCD_HUMAN IQ domain-containing protein D OS=Homo sapiens
           GN=IQCD PE=2 SV=2
          Length = 449

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 338 WKGQALVQQNCNEGKERGKGQRKDSKIGRREGSPR 234
           WKG  LV+      K+RGKG+ KD + G+++G  +
Sbjct: 411 WKGY-LVRSLLRSKKKRGKGKAKDKEKGKQKGKEK 444
tr_hit_id A9RVM2
Definition tr|A9RVM2|A9RVM2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 74
Score (bit) 38.5
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961068|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_B21, 5'
         (577 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RVM2|A9RVM2_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.27 
tr|Q7RTB6|Q7RTB6_PLAYO Dynein beta chain, ciliary OS=Plasmodium ...    35   2.3  
tr|A7NV97|A7NV97_VITVI Chromosome chr18 scaffold_1, whole genome...    35   3.8  
tr|B4QAE8|B4QAE8_DROSI GD24235 (Fragment) OS=Drosophila simulans...    35   3.8  
tr|Q29KJ5|Q29KJ5_DROPS GA10476 OS=Drosophila pseudoobscura pseud...    34   5.0  
tr|B4GT99|B4GT99_DROPE GL26330 OS=Drosophila persimilis GN=GL263...    34   5.0  
tr|A8N4E2|A8N4E2_COPC7 Predicted protein OS=Coprinopsis cinerea ...    34   5.0  
tr|Q9RZH4|Q9RZH4_DEIRA Putative uncharacterized protein OS=Deino...    34   5.1  
tr|Q6P4S1|Q6P4S1_XENLA MGC69043 protein OS=Xenopus laevis GN=gpr...    34   6.5  
tr|A2VPW1|A2VPW1_MYCTU Enoyl-CoA hydratase echA20 OS=Mycobacteri...    34   6.5  
tr|Q4X0R9|Q4X0R9_ASPFU Putative uncharacterized protein OS=Asper...    34   6.5  
tr|B0XSY0|B0XSY0_ASPFC Putative uncharacterized protein OS=Asper...    34   6.5  
tr|A5DC35|A5DC35_PICGU Putative uncharacterized protein OS=Pichi...    34   6.5  
tr|A1DHF3|A1DHF3_NEOFI Putative uncharacterized protein OS=Neosa...    34   6.5  

>tr|A9RVM2|A9RVM2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_161324 PE=4 SV=1
          Length = 407

 Score = 38.5 bits (88), Expect = 0.27
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
 Frame = -3

Query: 332 GQALVQQNCNEGKERG---KGQRKDSKIGR----REGSPRLGSRGRRFTLSQRHVGQTHH 174
           G+ +V Q+   G+      +G+  D+ + +    R  SPR  SR RR+    RH+  THH
Sbjct: 151 GRNIVVQSAKYGRNDEPIHRGRITDTTVKKGNRSRSHSPRRSSRDRRYRQDDRHMKDTHH 210

Query: 173 HGQHCE-SEQEEYR 135
           H    + +E+E YR
Sbjct: 211 HSHSRDRNERESYR 224


>tr|Q7RTB6|Q7RTB6_PLAYO Dynein beta chain, ciliary OS=Plasmodium
            yoelii yoelii GN=PY00078 PE=4 SV=1
          Length = 5174

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -3

Query: 464  KLEYRQTLHQRVPQITNEQMSREKAS*NNYLSERMYVCLSDTWKGQALVQ-QNCNEGKER 288
            ++EY +    R+ Q   E  +++ AS +NY  E      S+   GQ L + +  NEGKE 
Sbjct: 4802 EIEYMKNECSRILQNLQELGNKDIASSSNYKDENKKNITSENVDGQKLKENERSNEGKEE 4861

Query: 287  GKGQRKDSK 261
             K  RKD++
Sbjct: 4862 KKCNRKDTE 4870


>tr|A7NV97|A7NV97_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015352001
           PE=4 SV=1
          Length = 844

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -3

Query: 383 NNYLSERMYVCLSDTWKGQALVQQNCNEGKERGKGQRKDSKIGRREGSPRLGSRGRRFTL 204
           +N LS+  +V   D+WKG+  V  NC+ G ER      D      +G P   +      +
Sbjct: 17  HNLLSDVTFV--GDSWKGKGKVDVNCDFGHERNHFLLHD------KGFPYEDNAFSAENI 68

Query: 203 SQRHVGQTHHHGQH 162
           SQ  +G  H +G H
Sbjct: 69  SQEPMGHNHVNGHH 82


>tr|B4QAE8|B4QAE8_DROSI GD24235 (Fragment) OS=Drosophila simulans
            GN=GD24235 PE=4 SV=1
          Length = 2107

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 320  VQQNCNEGKERGKGQRKDSKIGRREGSPRLGSRGRRFTLSQRHVGQTHHHGQHCESE 150
            +   C+  +++ K  +K  K G R    +  SR  + + + RHVG  HHH  H + E
Sbjct: 1329 ISSGCSAAQDKNKANKK--KGGLRSSFTKAFSRNAKISKTSRHVGH-HHHHNHSQQE 1382


>tr|Q29KJ5|Q29KJ5_DROPS GA10476 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA10476 PE=4 SV=2
          Length = 891

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 320 VQQNCNEGKERGKGQRKDSKIGRREGSPRLGSRGRRFTLSQRHVGQTHHHGQH 162
           +   C+  +++ K  +K   +  R    +  SR  + + + RHVG  HHH  H
Sbjct: 110 ISSGCSAAQDKNKANKKKGWL--RSSFTKAFSRNAKISKTSRHVGHHHHHNHH 160


>tr|B4GT99|B4GT99_DROPE GL26330 OS=Drosophila persimilis GN=GL26330
           PE=4 SV=1
          Length = 950

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 320 VQQNCNEGKERGKGQRKDSKIGRREGSPRLGSRGRRFTLSQRHVGQTHHHGQH 162
           +   C+  +++ K  +K   +  R    +  SR  + + + RHVG  HHH  H
Sbjct: 169 ISSGCSAAQDKNKANKKKGWL--RSSFTKAFSRNAKISKTSRHVGHHHHHNHH 219


>tr|A8N4E2|A8N4E2_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_09626 PE=4
           SV=1
          Length = 1566

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -3

Query: 335 KGQALVQQNCNEGKERGKGQRK-DSKIGRREGSPRLGSRGRRFTLSQRHVGQTHHHGQHC 159
           KG+   +    EG E+ KG+R+ D+  G   GSP     G+R  L+  H    HHH  H 
Sbjct: 486 KGKGKARDGGGEGSEKAKGKRRADTGEGVEGGSP-----GKRRRLTHHHRH--HHHHHHL 538

Query: 158 ESEQEE 141
           + ++ +
Sbjct: 539 DEDEAD 544


>tr|Q9RZH4|Q9RZH4_DEIRA Putative uncharacterized protein
           OS=Deinococcus radiodurans GN=DR_C0010 PE=4 SV=1
          Length = 185

 Score = 34.3 bits (77), Expect = 5.1
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 107 TTVAINGFIGGILLVHFHSAG--HDDEFGRHGVGSG*ISCRGSRVWGCLHVSRSWS 268
           TT+ ++ ++  +L+  F  A   H D FG H  GSG  + + S VW  +H  RSW+
Sbjct: 92  TTLHLSAWVESVLISKFVPAWNRHIDGFGNHDPGSGRYNQKRS-VWDQVHPGRSWA 146


>tr|Q6P4S1|Q6P4S1_XENLA MGC69043 protein OS=Xenopus laevis GN=gpr124
            PE=2 SV=1
          Length = 1306

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 3/125 (2%)
 Frame = -3

Query: 497  NLHVK*PQNLYKLEYRQTLHQRVPQI---TNEQMSREKAS*NNYLSERMYVCLSDTWKGQ 327
            NLH +        +YR   H R+  +   +++Q S E  S +N  SE      S   +  
Sbjct: 1151 NLHTRRNHKSRSKQYRDGKHHRLKMLRGPSSDQHSSESGSIHNSHSE------SYNSRNS 1204

Query: 326  ALVQQNCNEGKERGKGQRKDSKIGRREGSPRLGSRGRRFTLSQRHVGQTHHHGQHCESEQ 147
             L     N G+  G+ +  +  I   EGS   G   + F  +QR      +  Q    E+
Sbjct: 1205 PL-----NNGRPGGEAREPEGAITHSEGSDSSGHHAQNFAKAQRKSASRDNLKQANSMER 1259

Query: 146  EEYRR 132
            E  RR
Sbjct: 1260 ESKRR 1264


>tr|A2VPW1|A2VPW1_MYCTU Enoyl-CoA hydratase echA20 OS=Mycobacterium
           tuberculosis C GN=TBCG_03479 PE=4 SV=1
          Length = 247

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = -3

Query: 329 QALVQQNCNEGKERGKGQRKDSKIGRREGSPRLGSRGRRFTLSQRHVGQTHHHGQHCESE 150
           Q L+++    G  RG+G     ++G R G PR   RG RF    RH  Q H      + +
Sbjct: 149 QHLMRRLFFTGGHRGRGHLAALRLGARGGVPRSAGRG-RFAGGPRHRRQRHPSHPRRQGD 207

Query: 149 QEEYRR 132
            E +RR
Sbjct: 208 AELHRR 213