DK961069
Clone id TST39A01NGRL0009_B22
Library
Length 665
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_B22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTGCCATCTGGAAAGCTGTTGGCAGGGCAGGCCTTGCAGCGCCTCCCGGAGCTGAGGAAG
ACGTTTTGGGTGAACCCGGTCTGGTGTTCTAATGAGAATACACGTCTGCCTGCGAGAAAT
ATATGGCAAGGCGAGAGAATGTGAATAGTCATAACTATGGCTATTATGACTAACCAATGC
CACAGTCATTTTTTGGTGCTTAGGCCCGATGGAATTTCTTGGTCTGCTTTTTCTTTTCGA
GGATGCAAGGTGCCAAACCCGAAACGAGTGGCCTTTTTTTGCAGGAATGCGCAGGCAACA
GGTGAGAATGACGAGGCCTGGAAACATTTCACAGCCTCCTCTCGCCCGTTAAATGTCACA
TGTTCTACTGCAATCTTCATGCTTGCCTCTATTGCTTTAGGCATCAGGGCTGCCTCGGCA
TCTGCCTGTGCTTTTCAGGGTGAGCTACCTGGTTATCAGGGCCTGCCTTTAATCAGAGAG
GAAGTAAAGGCCATCTCTGAGTTGGAGGTCTCCAGATTTTCTTCGACCTCAGGCGTTACA
GCTTTACCAACCGTAAGAGAATTTCTGCAGGTGCAGAATACGGAAGAATATGAATGTGAT
GCGCATGAGGCATGCATAGACAGTGTATTCAGAACACCAAGGCATTATTCAATCAAGAGG
ATGCA
■■Homology search results ■■ -
sp_hit_id Q9CYZ6
Definition sp|Q9CYZ6|CS060_MOUSE Uncharacterized protein C19orf60 homolog OS=Mus musculus
Align length 88
Score (bit) 32.0
E-value 3.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961069|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_B22, 5'
(665 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9CYZ6|CS060_MOUSE Uncharacterized protein C19orf60 homolog O... 32 3.0
sp|Q1D0S8|MURD_MYXXD UDP-N-acetylmuramoylalanine--D-glutamate li... 32 3.9
sp|Q8TCU4|ALMS1_HUMAN Alstrom syndrome protein 1 OS=Homo sapiens... 32 3.9
sp|Q15628|TRADD_HUMAN Tumor necrosis factor receptor type 1-asso... 31 6.7

>sp|Q9CYZ6|CS060_MOUSE Uncharacterized protein C19orf60 homolog
OS=Mus musculus PE=2 SV=1
Length = 169

Score = 32.0 bits (71), Expect = 3.0
Identities = 20/88 (22%), Positives = 42/88 (47%)
Frame = +1

Query: 289 AQATGENDEAWKHFTASSRPLNVTCSTAIFMLASIALGIRAASASACAFQGELPGYQGLP 468
AQA D+A + + S + + ++ + + AAS A + EL G + P
Sbjct: 44 AQAFRRLDQAHRQYLLSGQHYDFPSYRSV--VHEVTQAFAAASREVLAVEAELAGPRAQP 101

Query: 469 LIREEVKAISELEVSRFSSTSGVTALPT 552
++ V+++ ELE +R ++ + + + T
Sbjct: 102 VLARHVRSLQELEQTRLATVALLQVMGT 129


>sp|Q1D0S8|MURD_MYXXD UDP-N-acetylmuramoylalanine--D-glutamate
ligase OS=Myxococcus xanthus (strain DK 1622) GN=murD
PE=3 SV=1
Length = 455

Score = 31.6 bits (70), Expect = 3.9
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1

Query: 322 KHFTASSRPLNVTCSTAIFMLASIALGIRAASASACAFQGELPGYQGLPLIREEVKAISE 501
+H+T ++R L + M A AL R ++ A Q L GY GLP E V+ +
Sbjct: 273 EHYTLTNRALRGAHNAQNAMAA--ALLARLGGVASGAVQAGLDGYPGLPHRLESVRVLDG 330

Query: 502 LE-VSRFSSTSGVTALPTVREFLQ 570
+E V+ +T+ + L +R F Q
Sbjct: 331 VEWVNDSKATNVDSVLVALRAFSQ 354


>sp|Q8TCU4|ALMS1_HUMAN Alstrom syndrome protein 1 OS=Homo sapiens
GN=ALMS1 PE=1 SV=2
Length = 4167

Score = 31.6 bits (70), Expect = 3.9
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1

Query: 409 AASASACAFQGELPGYQGLPLIREEVKAISELEVSRFSSTSGVTALPTVREFLQVQNTEE 588
AA+A A G+ P + LP + KAI++ E T A P +E LQ+ N EE
Sbjct: 3408 AAAAEHSAQVGD-PEMKNLP----DTKAITQKEEIHRKKTVPEEAWPNNKESLQI-NIEE 3461

Query: 589 YECDAH-EACIDSVFRTPRHY 648
EC + E SVFR+ + Y
Sbjct: 3462 SECHSEFENTTRSVFRSAKFY 3482


>sp|Q15628|TRADD_HUMAN Tumor necrosis factor receptor type
1-associated DEATH domain protein OS=Homo sapiens
GN=TRADD PE=1 SV=2
Length = 312

Score = 30.8 bits (68), Expect = 6.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3

Query: 105 TCILIRTPDRVHPKRLPQLREALQGLPC 22
+CIL + PDR+ + L +L +AL+ L C
Sbjct: 137 SCILAQQPDRLRDEELAELEDALRNLKC 164


tr_hit_id A4ACL8
Definition tr|A4ACL8|A4ACL8_9GAMM Putative uncharacterized protein OS=Congregibacter litoralis KT71
Align length 64
Score (bit) 35.0
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961069|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_B22, 5'
(665 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A4ACL8|A4ACL8_9GAMM Putative uncharacterized protein OS=Congr... 35 4.2
tr|Q9XWX3|Q9XWX3_CAEEL Putative uncharacterized protein scl-21 O... 35 5.5
tr|Q7PMS0|Q7PMS0_ANOGA AGAP004795-PA OS=Anopheles gambiae GN=AGA... 34 7.1

>tr|A4ACL8|A4ACL8_9GAMM Putative uncharacterized protein
OS=Congregibacter litoralis KT71 GN=KT71_19243 PE=4 SV=1
Length = 261

Score = 35.0 bits (79), Expect = 4.2
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = +1

Query: 349 LNVTCSTAIFMLASIALGIRAASASACAFQGELPGYQGLPLIREEVKAISELEVSRFSST 528
L V ST I L LGI A S + A Q + PG Q P +E++A++ + +ST
Sbjct: 2 LTVVASTLITALPLTTLGITAQSLVSTAAQAQTPGAQEAP---KELRALTPYDAVYKTST 58

Query: 529 SGVT 540
SG++
Sbjct: 59 SGLS 62


>tr|Q9XWX3|Q9XWX3_CAEEL Putative uncharacterized protein scl-21
OS=Caenorhabditis elegans GN=scl-21 PE=2 SV=1
Length = 198

Score = 34.7 bits (78), Expect = 5.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -1

Query: 134 SPCHIFLAGRR----VFSLEHQTGFTQNVFLSSGRRCKACPANS 15
SPC I GRR V S E + G T+ G+ C+ACPA +
Sbjct: 145 SPCEIDSQGRRWYKVVCSFEKKGGITREPVYKKGKACEACPAGT 188


>tr|Q7PMS0|Q7PMS0_ANOGA AGAP004795-PA OS=Anopheles gambiae
GN=AGAP004795 PE=4 SV=4
Length = 639

Score = 34.3 bits (77), Expect = 7.1
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +2

Query: 221 GLLFLFEDARCQTRNEWPFFAGMRRQQVRMTRPGNISQPPLA 346
G+L L + + +++WPF++ RQ V+ RP N++ PPL+
Sbjct: 360 GVLILHRNIWNEVQDDWPFYSEQDRQAVKRRRPQNLT-PPLS 400