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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961080
Clone id TST39A01NGRL0009_C09
Library
Length 692
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_C09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TGAACTTCGAGGGGCGAGCTAATCCTCACCTGTTGTCTATTGTTGTGATCCGTAATTTTC
AAGCAAACTTAGTGTTCTGCTGGGCATGATACGCCCTTTGTGCCTCCAGACAGAAAATGG
AAAATCAAGCAGACCATGAAGGAGACGCACACCCTGGAAGCTCGTCCTCGTCGTCATCTC
CACCATCTTCACATTCGTCGTCATCTTCATCGTCGTCATCTCCCTCCCATCCACAGTCAT
TTGCATCGTCTCGTTCGTCGCAGAAAGAGCTTTCGGCTCCATCATCGTCACACTCATCTT
CATCCTCATCTTCACCTTTTTCAGGACCATCTTCGCCTGCTCATGCACACATTGATCAGG
CCTCGTCCAGTGCAATTGAAGAGACTCTTCCAGCTGCATTACCAAGTTCTTCTGCAGAAG
GAGGTCATACAGATGAGTGCATCTTGGGCTCTTCAATTAAACAGGATTGTCTTGATGCTT
CCAAGGCTACGGAAGAGCTCAAAGACAGTAATGACACTCCAAGATTAGAGCCGTCAAGTC
TCTGTAGAAATCAAGTGTGTGTTGATGATGCCTGCGGTAGTACGTCCGAGGAGTTCACTA
CTAATAGTTATGATGGTCAAACACCTGATACTACCTCCAACATGTATTTTCCACAAACAA
TGGAGCCTACTCAAGCAGTGGGGTTATGCAAT
■■Homology search results ■■ -
sp_hit_id Q9NWH9
Definition sp|Q9NWH9|SLTM_HUMAN SAFB-like transcription modulator OS=Homo sapiens
Align length 103
Score (bit) 35.4
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961080|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_C09, 5'
         (692 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NWH9|SLTM_HUMAN SAFB-like transcription modulator OS=Homo s...    35   0.29 
sp|Q9R0M4|PODXL_MOUSE Podocalyxin-like protein 1 OS=Mus musculus...    34   0.85 
sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related pro...    32   3.2  
sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related p...    31   7.2  
sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyo...    31   7.2  
sp|Q6UB99|ANR11_HUMAN Ankyrin repeat domain-containing protein 1...    30   9.4  

>sp|Q9NWH9|SLTM_HUMAN SAFB-like transcription modulator OS=Homo
           sapiens GN=SLTM PE=1 SV=2
          Length = 1034

 Score = 35.4 bits (80), Expect = 0.29
 Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
 Frame = +3

Query: 405 SSSAEGGHTDECILGSSIKQDCLDASKATEELKDSNDTPRLEPSSL-------CRNQVCV 563
           +++ + G  ++C+ G  ++++  ++SK  E      DT +  PSS          ++   
Sbjct: 300 NANHKDGKKEDCVKGDPVEKEARESSKKAESGDKEKDTLKKGPSSTGASGQAKSSSKESK 359

Query: 564 DDACGSTSEEFTTNSYDGQTPDTTSNMYFPQTMEPTQAVGLCN 692
           D    S  ++ +T+S  G +  +T N++       T+A  L N
Sbjct: 360 DSKTSSKDDKGSTSSTSGSSGSSTKNIWVSGLSSNTKAADLKN 402


>sp|Q9R0M4|PODXL_MOUSE Podocalyxin-like protein 1 OS=Mus musculus
           GN=Podxl PE=2 SV=2
          Length = 503

 Score = 33.9 bits (76), Expect = 0.85
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
 Frame = +3

Query: 351 IDQASSSA---IEETLPAALPSSSAEGGHTDECIL-GSSIKQDCLDASKATEELKDSNDT 518
           +D + S+A   + +  PAA+PSSS     TD   L         L  S+AT+ L  ++ T
Sbjct: 175 VDSSPSTASHPVGQHTPAAVPSSSGSTPSTDNSTLTWKPTTHKPLGTSEATQPL--TSQT 232

Query: 519 PRLEPSSLCRNQVCVDDACGSTSEEFTTNSYDGQTPDTTSNMYFPQTMEPTQAVG 683
           P +    +   Q  +    G+T+EEFT    +G TP        P T  P  A G
Sbjct: 233 PGITTLPVSTLQQSMASTVGTTTEEFTHLISNG-TPVAPPG---PSTPSPIWAFG 283


>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein
            OS=Caenorhabditis elegans GN=lrp-1 PE=1 SV=1
          Length = 4753

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
 Frame = +3

Query: 381  ETLPAALPSSSAEGGHTDECILGSSI--KQDCLDASKATEELKDSNDTPRLEPSSLCRNQ 554
            E     LP  + + G     +LG++   K DC DAS       ++   P  E  +LC N+
Sbjct: 2787 EPAKECLPPYNFQCGDGSCILLGATCDSKPDCADASDENPNYCNTRSCP--EDYNLCTNR 2844

Query: 555  VCVD--------DACGSTSEE 593
             C+D        D CG  S+E
Sbjct: 2845 RCIDSAKKCNHIDDCGDGSDE 2865



 Score = 30.8 bits (68), Expect = 7.2
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
 Frame = +3

Query: 459  KQDCLDASKATEELKDS--NDTPRLEPSSLCRN-QVCV--------DDACGSTSEEFTTN 605
            + DCLD S   +E  D   ++T   E +  CRN + C+        D+ CG  S+E    
Sbjct: 1078 ENDCLDESDEIDEKGDKCFHETECAENTIKCRNTKKCIPAQYGCDGDNDCGDYSDEDVKY 1137

Query: 606  SYDGQTP 626
              DGQ P
Sbjct: 1138 CKDGQKP 1144


>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related
            protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1
          Length = 4599

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
 Frame = +3

Query: 459  KQDCLDASKATEELKDSNDTPRL---EPSSLCRNQVCV--------DDACGSTSEEFTTN 605
            ++DC D S   +EL  +   P     E + +C N+VC+        DD CG  S+EF   
Sbjct: 2784 ERDCPDGS---DELSSAGCAPNNTCDENAFMCHNKVCIPKQFVCDHDDDCGDGSDEFLQC 2840

Query: 606  SY 611
             Y
Sbjct: 2841 GY 2842


>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A
            OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1
          Length = 977

 Score = 30.8 bits (68), Expect = 7.2
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
 Frame = +3

Query: 354  DQASSSAIEETLPAALPSSSAEGGHTDECILGSSIKQDCLDASKATEELKD--SNDTPRL 527
            D+   S I+  LP +  ++S+     D     +SIK   ++ S +   +KD  +N+    
Sbjct: 749  DEQIQSLIQNQLPLSNLNNSSNSLQLDSSTSMNSIKDSIINISSSNNNIKDNLTNNNTNT 808

Query: 528  EPSSLCRNQVCVDDACGSTSEEFTTNSYDGQ-TPDTTSNMYFPQTME 665
              ++   N    +    S S      +  GQ +P+TTS +  PQ  +
Sbjct: 809  NTNNTNNNTSNGNGNSNSVSMSSININNSGQLSPNTTSPILIPQQQQ 855


>sp|Q6UB99|ANR11_HUMAN Ankyrin repeat domain-containing protein 11
           OS=Homo sapiens GN=ANKRD11 PE=1 SV=2
          Length = 2663

 Score = 30.4 bits (67), Expect = 9.4
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 354 DQASSSAIEETLPAALPSSSAEGGHTD-ECILGSSIKQDCLDASKATEELKD 506
           + ++ S+ EE  P+  PSSS +G +TD E   G   K    +  KAT  +KD
Sbjct: 294 ESSTESSEEEDAPSFAPSSSVDGNNTDSEFEKGLKHKAKNPEPQKATAPVKD 345
tr_hit_id A2DMT3
Definition tr|A2DMT3|A2DMT3_TRIVA Dentin sialophosphoprotein, putative OS=Trichomonas vaginalis G3
Align length 97
Score (bit) 38.1
E-value 0.53
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961080|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_C09, 5'
         (692 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2DMT3|A2DMT3_TRIVA Dentin sialophosphoprotein, putative OS=T...    38   0.53 
tr|A0E4U4|A0E4U4_PARTE Chromosome undetermined scaffold_79, whol...    36   2.0  
tr|A2DMT1|A2DMT1_TRIVA A-agglutinin attachment subunit, putative...    35   3.5  
tr|Q4SYS6|Q4SYS6_TETNG Chromosome undetermined SCAF11966, whole ...    35   4.5  
tr|Q9BDT3|Q9BDT3_VOMUR BRCA1 (Fragment) OS=Vombatus ursinus PE=4...    35   5.9  
tr|B4PFP0|B4PFP0_DROYA GE20182 OS=Drosophila yakuba GN=GE20182 P...    35   5.9  
tr|Q7RM22|Q7RM22_PLAYO Putative uncharacterized protein PY02366 ...    34   7.7  
tr|Q4PHD3|Q4PHD3_USTMA Putative uncharacterized protein OS=Ustil...    34   7.7  

>tr|A2DMT3|A2DMT3_TRIVA Dentin sialophosphoprotein, putative
           OS=Trichomonas vaginalis G3 GN=TVAG_254160 PE=4 SV=1
          Length = 636

 Score = 38.1 bits (87), Expect = 0.53
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
 Frame = +3

Query: 360 ASSSAIEETLPAALPS---SSAEGGHTDECILGSSIKQDCLDASKATEELKDSNDTPRLE 530
           +SSS+ EET   +  S   +S+    ++E    SS  ++   +S ++EE   S+ +   E
Sbjct: 381 SSSSSSEETTTTSSSSEETTSSSSSSSEETTSSSSSSEETTSSSSSSEETTSSSSSSSEE 440

Query: 531 PSSLCRNQVCVDDACGSTSEEFTTNSYDGQTPDTTSN 641
            +S   +    +    STS E TT+S    + +TT++
Sbjct: 441 TTSSSSSSSSEETTSSSTSSEETTSSSSTNSEETTAS 477



 Score = 36.2 bits (82), Expect = 2.0
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
 Frame = +3

Query: 360 ASSSAIEETLPAALPSS-----SAEGGHTDECILGSSIKQDCLDASKATEELKDSNDTPR 524
           +SSS+ EET  ++  SS     S+    ++E    SS  ++   +S ++ E   S+ +  
Sbjct: 358 SSSSSSEETTSSSTSSSEETTTSSSSSSSEETTTTSSSSEETTSSSSSSSEETTSSSSSS 417

Query: 525 LEPSSLCRNQVCVDDACGSTSEEFTTNSYDGQTPDTTSN 641
            E +S   +      +  S+SEE T++S    + +TTS+
Sbjct: 418 EETTSSSSSSEETTSSSSSSSEETTSSSSSSSSEETTSS 456



 Score = 35.8 bits (81), Expect = 2.7
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
 Frame = +3

Query: 360 ASSSAIEETLPAALPSS-----SAEGGHTDECILGSSIKQDCLDASKATEELKDSNDTPR 524
           +SSS+ EET  ++  SS     S+    ++E    SS  ++   +S ++ E   S+ +  
Sbjct: 294 SSSSSSEETTSSSTSSSEETTSSSSSSSSEETTSSSSSSEETTSSSSSSSEETTSSSSSS 353

Query: 525 LEPSSLCRNQVCVDDACGSTSEEFTTNSYDGQTPDTTS 638
            E +S   +      +  S+SEE TT+S    + +TT+
Sbjct: 354 EETTSSSSSSEETTSSSTSSSEETTTSSSSSSSEETTT 391



 Score = 34.7 bits (78), Expect = 5.9
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
 Frame = +3

Query: 360 ASSSAIEETLPAALPS---SSAEGGHTDECILGSSIKQDCLDASKATEELKDSNDTPRLE 530
           +SSS+ EET  ++  S   +S+     +     SS  ++   +S ++EE   S+ +   E
Sbjct: 209 SSSSSSEETTSSSSSSEETTSSSSSSEETTSSSSSSSEETTSSSSSSEETTSSSSSSSEE 268

Query: 531 PSSLCRNQVCVDDACGSTSEEFTTNSYDGQTPDTTSN 641
            +S   +      +  S+SEE T++S    + +TTS+
Sbjct: 269 TTSSSSSSEETTSSSTSSSEETTSSSSSSSSEETTSS 305


>tr|A0E4U4|A0E4U4_PARTE Chromosome undetermined scaffold_79, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00023487001 PE=4 SV=1
          Length = 374

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = +3

Query: 540 LCRNQVCVDDACGSTSEEFTTNSYDGQTPDTTSNMYFPQTMEPTQ 674
           L +  V  D  C S+S+ FTT SYD ++P   SN Y  QT +P+Q
Sbjct: 307 LTKFSVISDSTCFSSSK-FTTKSYDIESPFKQSNNYVNQTPQPSQ 350


>tr|A2DMT1|A2DMT1_TRIVA A-agglutinin attachment subunit, putative
           OS=Trichomonas vaginalis G3 GN=TVAG_254140 PE=4 SV=1
          Length = 404

 Score = 35.4 bits (80), Expect = 3.5
 Identities = 26/101 (25%), Positives = 47/101 (46%)
 Frame = +3

Query: 354 DQASSSAIEETLPAALPSSSAEGGHTDECILGSSIKQDCLDASKATEELKDSNDTPRLEP 533
           +  SSS+ EET  ++  SS      + E    SS  ++   +S ++EE   S+ +   E 
Sbjct: 151 ETTSSSSSEETTSSSSSSSEETTSSSSEETTSSSSSEETTSSSTSSEETTSSSSSSSEET 210

Query: 534 SSLCRNQVCVDDACGSTSEEFTTNSYDGQTPDTTSNMYFPQ 656
           +S             S+SEE T++S    + +TTS+  + +
Sbjct: 211 TS-----------SSSSSEETTSSSLSSYSEETTSSSSYSE 240



 Score = 35.0 bits (79), Expect = 4.5
 Identities = 24/96 (25%), Positives = 47/96 (48%)
 Frame = +3

Query: 354 DQASSSAIEETLPAALPSSSAEGGHTDECILGSSIKQDCLDASKATEELKDSNDTPRLEP 533
           +  SSS+ EET  ++  SS      + E    SS  ++   +S ++EE   S+ +     
Sbjct: 104 ETTSSSSSEETTTSSSSSSEETTSSSSEETTSSSSSEETTSSSSSSEETTSSSSSEETTS 163

Query: 534 SSLCRNQVCVDDACGSTSEEFTTNSYDGQTPDTTSN 641
           SS   +    ++   S+SEE T++S   +T  ++++
Sbjct: 164 SSSSSS----EETTSSSSEETTSSSSSEETTSSSTS 195


>tr|Q4SYS6|Q4SYS6_TETNG Chromosome undetermined SCAF11966, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00010187001 PE=4 SV=1
          Length = 567

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 29/92 (31%), Positives = 38/92 (41%)
 Frame = +3

Query: 414 AEGGHTDECILGSSIKQDCLDASKATEELKDSNDTPRLEPSSLCRNQVCVDDACGSTSEE 593
           A GGH       SS   DC++      ++  +     + P S+ R+ V V   C      
Sbjct: 471 AIGGHDAPASSLSSRLSDCVERYDPQTDVWTA-----VAPMSISRDAVGV---CLLGDRL 522

Query: 594 FTTNSYDGQTPDTTSNMYFPQTMEPTQAVGLC 689
           F    YDGQ   +T   Y PQT E TQ   LC
Sbjct: 523 FAVGGYDGQVYLSTVEAYDPQTNEWTQVAPLC 554


>tr|Q9BDT3|Q9BDT3_VOMUR BRCA1 (Fragment) OS=Vombatus ursinus PE=4
           SV=1
          Length = 864

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 17/123 (13%)
 Frame = +3

Query: 363 SSSAIEETLPAALPSSSAEGGHTDECILGSSIKQDCLDASKATEELKDSN-DTPRLE--- 530
           S S I ET    L   S++   +DE  L S ++Q+  +ASK T E++DS  DT  L+   
Sbjct: 529 SHSEIMETPKELLDGCSSKNTESDEEDLRSLMRQEVKNASKTTTEMEDSELDTQYLQNTF 588

Query: 531 -------------PSSLCRNQVCVDDACGSTSEEFTTNSYDGQTPDTTSNMYFPQTMEPT 671
                        P   CR    V       S + TT+   GQ  +   N    + + P 
Sbjct: 589 KRSKRQSFALRSSPRQECRKPSAVPGTVNQQSPDNTTDC-GGQEKEKQGNRESNKPVWPK 647

Query: 672 QAV 680
            AV
Sbjct: 648 SAV 650


>tr|B4PFP0|B4PFP0_DROYA GE20182 OS=Drosophila yakuba GN=GE20182 PE=4
           SV=1
          Length = 1247

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
 Frame = +3

Query: 357 QASSSAIE---ETLPAALPSSSAEGGHTDECILGSSIKQDCLDASKATEE---LKDSNDT 518
           Q SSS  E    T  +   SSS E  +       SS  +  L    +T+E    + SND+
Sbjct: 584 QESSSTTEGPLSTESSTDESSSTESSNDSTTQESSSTTEGPLSTESSTDESSSTESSNDS 643

Query: 519 PRLEPSSLCRNQVCVDDACGSTSEEFTTNSY-DGQTPDTTSNMYFPQTMEPT 671
              E SS     +  + + G+T +  TT S  D  T ++T+    P     T
Sbjct: 644 TTQESSSTTEGPLSTESSTGATDQPSTTESLPDSTTQESTTESPLPSESSTT 695


>tr|Q7RM22|Q7RM22_PLAYO Putative uncharacterized protein PY02366
            (Fragment) OS=Plasmodium yoelii yoelii GN=PY02366 PE=4
            SV=1
          Length = 1489

 Score = 34.3 bits (77), Expect = 7.7
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = +3

Query: 381  ETLPAALPSSSA---EGGHTDECILGSSIKQDCLDASKATEELKDSNDTPRLEPSSLCRN 551
            E+LP  + + S       HT+  IL     Q   +  K  + +++SN +PR   +     
Sbjct: 1016 ESLPHTVDNLSHINNRNSHTNFDILNRDNPQIIAEQRKINDNIRNSNSSPRANINM--NE 1073

Query: 552  QVCVDDACGSTSEEFTTNSYDGQTPDTTSNMY 647
               + D  G+    +  N YD  T D  +N Y
Sbjct: 1074 SGIIMDTIGTNHTNYNNNIYDNNTYDNNTNSY 1105


>tr|Q4PHD3|Q4PHD3_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM00480.1 PE=4 SV=1
          Length = 1140

 Score = 34.3 bits (77), Expect = 7.7
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
 Frame = +3

Query: 366 SSAIEETLPAALPSSSAEGGHTDECILGSSIKQDCLDASKATEELKDSND---TPRLEPS 536
           SS+     P+A PS +    H       SS      D S ++     S+D   +P   PS
Sbjct: 369 SSSSTSDFPSATPSPTPSPSHRSPGSDSSSSTASSDDPSSSSSSSSSSDDDSGSPSTAPS 428

Query: 537 SLCRNQVC-VDDACGSTSEEFTTNSYDGQTPDTTSNMYFPQTMEPTQAV 680
           S   + +   DD+ GS++           T   T+ MY   TM PT  +
Sbjct: 429 SSWTHVITSTDDSAGSSTA----------TTHATATMYLTSTMHPTATI 467