DK961084
Clone id TST39A01NGRL0009_C13
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_C13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
GCCTAACAACAGTGCTGTGCTCTTCTTCCAAGCAAGTGTCGAAATTGGAAGGCCATCATC
AAACCCACGATAGCCAAACAATTAGGTTTCCTCGTGTTTCTGCTCTTCTGCTAGTACAAT
CAACCACATCGAGCTGTGTGTTGCCATGGAGAAGGAGAAGACACACATCAATATAGCACT
TGATTGGACATGTTGACTCAAGTAACTCTACTCCTCACTGGCCTCTTGATTTACCATCTG
CGGATGTTATCTATGATGCGATGAACTAAATGCGCTCTGCACAAAGAGGAAATTGACATG
ACCATTTGCTCTTGCAAATATGTCTGGAACTAAAACTTTCCTGTTGTGGATGTAGAACTA
GAAAGTACTAATGATATAGATCTCTGAAATCCCTAGAGGACCAATGACTATGGCGCTGGT
ATTGAGGCTGATGGACAGCGGAACTTTATCAAGAGCATGATAAATCGTCTCTCAGATGAT
GA
■■Homology search results ■■ -
sp_hit_id Q5E208
Definition sp|Q5E208|PLSB_VIBF1 Glycerol-3-phosphate acyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114)
Align length 25
Score (bit) 29.3
E-value 9.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961084|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_C13, 5'
(482 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5E208|PLSB_VIBF1 Glycerol-3-phosphate acyltransferase OS=Vib... 29 9.8

>sp|Q5E208|PLSB_VIBF1 Glycerol-3-phosphate acyltransferase OS=Vibrio
fischeri (strain ATCC 700601 / ES114) GN=plsB PE=3 SV=1
Length = 807

Score = 29.3 bits (64), Expect = 9.8
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3

Query: 468 TIYHALDKVPLSISLNTSAIVIGPL 394
TIYH+L K+PLS+ + +S+I P+
Sbjct: 6 TIYHSLLKLPLSVMVKSSSIPSNPI 30


tr_hit_id Q94AD0
Definition tr|Q94AD0|Q94AD0_ARATH Elongation factor 1-alpha OS=Arabidopsis thaliana
Align length 64
Score (bit) 35.0
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961084|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_C13, 5'
(482 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q94AD0|Q94AD0_ARATH Elongation factor 1-alpha OS=Arabidopsis ... 35 1.3
tr|A7PBC4|A7PBC4_VITVI Chromosome chr16 scaffold_10, whole genom... 33 9.2

>tr|Q94AD0|Q94AD0_ARATH Elongation factor 1-alpha OS=Arabidopsis
thaliana PE=2 SV=1
Length = 449

Score = 35.0 bits (79), Expect(2) = 1.3
Identities = 25/64 (39%), Positives = 31/64 (48%)
Frame = +1

Query: 283 KEEIDMTICSCKYVWN*NFPVVDVELESTNDIDL*NP*RTNDYGAGIEADGQRNFIKSMI 462
KE +M S KY W + + E T DI L T Y GI+A G R+FIK+MI
Sbjct: 44 KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKIETTKYYCTGIDAPGHRDFIKNMI 103

Query: 463 NRLS 474
S
Sbjct: 104 TGTS 107



Score = 20.8 bits (42), Expect(2) = 1.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3

Query: 180 LIGHVDSSNST 212
+IGHVDS ST
Sbjct: 12 VIGHVDSGKST 22


>tr|A7PBC4|A7PBC4_VITVI Chromosome chr16 scaffold_10, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00014037001
PE=4 SV=1
Length = 1022

Score = 32.7 bits (73), Expect = 9.2
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = -3

Query: 219 SEE*SYLSQHVQSSAILMCVFSFSMATHSSMWLIVLAEEQKHEET*LFGYRGFDDGLPIS 40
+EE +L + V I + V S S H+ LA KH+E R F+DGL +
Sbjct: 676 AEEAYHLYEEVTGKGIELGVVSISKVVHA------LANYGKHQEAENVIRRSFEDGLELD 729

Query: 39 TLAWKKSTALLLG 1
T+A+ +LG
Sbjct: 730 TVAYNTFINAMLG 742