DK961092 |
Clone id |
TST39A01NGRL0009_C21 |
Library |
TST39 |
Length |
693 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_C21. 5' end sequence. |
Accession |
DK961092 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL914Contig1 |
Sequence |
ATTCTGCTCTCCCTCTCTCGAAGACATTCACGCACCCGCCACAGACTCTCTCTCTTCGTT GCATTTGCGGCCAAGGGTTCGTCTAAGGAGACATGGAGTCTGCAACCCTTGCCGGGGGCT CTTCGTGCAGAGTTTCGGAGCATTCTGGTTTGCTGGACGGTTCTGGGCTTCGCCCTGCTC GAGCCCACCTCAATCGGCTTCTGCATCACCATCGTCCTTTACAAAGCCATCCTACCAGCA GGCTTGAGGTATATGCAGGTGTGGGAAATACATTTGGAAATTTGTTTCGAGTGACCACAT ATGGCGAGTCACATGGTGGAGGTGTTGGTTGTGTCATTGATGGGGTTCCTCCAAGACTAC CGCTCACTGAAGCAGACATGCAGTTTGAGCTGGATAGGAGGAGGCCAGGTCAAAGCCGCA TCACAACTCCTCGAAAGGAGACCGATACCTGCTCAATATTGTCTGGTGTTGCGGACGGTC TTACCTTGGGAACTCCAATTGCCGTGAACGTGCCAAATACAGATCAAAGAGGAGGGGACT ATCAAGAAATGTCGCTTGCCTACAGACCATCCCATGCAGATGCTACCTATGATTTCAAGT ATGGGGTTCGGGCTGTTCAAGGTGGTGGTAGGTCCTCCGCGAGAGAGACTATTGGAAGGG TGGCAGCTGGAGCAGTTGCTAAGAAAGTGCTGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q42885 |
Definition |
sp|Q42885|AROC2_SOLLC Chorismate synthase 2, chloroplastic OS=Solanum lycopersicum |
Align length |
140 |
Score (bit) |
246.0 |
E-value |
6.0e-65 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961092|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0009_C21, 5' (693 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q42885|AROC2_SOLLC Chorismate synthase 2, chloroplastic OS=So... 246 6e-65 sp|Q42884|AROC1_SOLLC Chorismate synthase 1, chloroplastic OS=So... 244 2e-64 sp|P27793|AROC_CORSE Chorismate synthase, chloroplastic OS=Coryd... 231 3e-60 sp|P57720|AROC_ARATH Chorismate synthase, chloroplastic OS=Arabi... 228 2e-59 sp|Q31RS5|AROC_SYNE7 Chorismate synthase OS=Synechococcus elonga... 214 4e-55 sp|Q5N2I0|AROC_SYNP6 Chorismate synthase OS=Synechococcus sp. (s... 211 2e-54 sp|Q8DLM1|AROC_THEEB Chorismate synthase OS=Thermosynechococcus ... 205 2e-52 sp|B0C2W2|AROC_ACAM1 Chorismate synthase OS=Acaryochloris marina... 204 4e-52 sp|Q110N5|AROC_TRIEI Chorismate synthase OS=Trichodesmium erythr... 201 2e-51 sp|P23353|AROC_SYNY3 Chorismate synthase OS=Synechocystis sp. (s... 200 5e-51 sp|Q3MFM3|AROC_ANAVT Chorismate synthase OS=Anabaena variabilis ... 200 5e-51 sp|Q8YYP9|AROC_ANASP Chorismate synthase OS=Anabaena sp. (strain... 200 5e-51 sp|Q2JLD4|AROC_SYNJB Chorismate synthase OS=Synechococcus sp. GN... 196 1e-49 sp|Q2JXD0|AROC_SYNJA Chorismate synthase OS=Synechococcus sp. (s... 194 3e-49 sp|B0JWQ2|AROC_MICAN Chorismate synthase OS=Microcystis aerugino... 194 5e-49 sp|A5GIL9|AROC_SYNPW Chorismate synthase OS=Synechococcus sp. (s... 189 2e-47 sp|Q0ID82|AROC_SYNS3 Chorismate synthase OS=Synechococcus sp. (s... 188 2e-47 sp|A5GW34|AROC_SYNR3 Chorismate synthase OS=Synechococcus sp. (s... 187 6e-47 sp|Q7U9F0|AROC_SYNPX Chorismate synthase OS=Synechococcus sp. (s... 184 3e-46 sp|Q3AMV2|AROC_SYNSC Chorismate synthase OS=Synechococcus sp. (s... 184 4e-46 sp|Q3AUR6|AROC_SYNS9 Chorismate synthase OS=Synechococcus sp. (s... 182 2e-45 sp|Q0BVN0|AROC_GRABC Chorismate synthase OS=Granulibacter bethes... 181 3e-45 sp|Q7V4Y9|AROC_PROMM Chorismate synthase OS=Prochlorococcus mari... 178 2e-44 sp|A2CCA2|AROC_PROM3 Chorismate synthase OS=Prochlorococcus mari... 178 2e-44 sp|P46894|AROC_PROMA Chorismate synthase OS=Prochlorococcus mari... 177 4e-44 sp|A9H0U2|AROC_GLUDA Chorismate synthase OS=Gluconacetobacter di... 177 5e-44 sp|A5FY49|AROC_ACICJ Chorismate synthase OS=Acidiphilium cryptum... 177 6e-44 sp|Q07HS5|AROC_RHOP5 Chorismate synthase OS=Rhodopseudomonas pal... 176 1e-43 sp|Q7V364|AROC_PROMP Chorismate synthase OS=Prochlorococcus mari... 175 2e-43 sp|Q31CV7|AROC_PROM9 Chorismate synthase OS=Prochlorococcus mari... 175 2e-43
>sp|Q42885|AROC2_SOLLC Chorismate synthase 2, chloroplastic OS=Solanum lycopersicum GN=CS2 PE=2 SV=1 Length = 431
Score = 246 bits (629), Expect = 6e-65 Identities = 119/140 (85%), Positives = 126/140 (90%) Frame = +3
Query: 240 RLEVYAGVGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSR 419 RLE+ A GNTFGN FRVTT+GESHGGGVGC+IDG PPRLPL+E+DMQ ELDRRRPGQSR Sbjct: 43 RLEIQAA-GNTFGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSR 101
Query: 420 ITTPRKETDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFK 599 ITTPRKETDTC I SG ADGLT G+PI V VPNTDQRG DY EMSLAYRPSHADATYDFK Sbjct: 102 ITTPRKETDTCKISSGTADGLTTGSPIKVEVPNTDQRGNDYSEMSLAYRPSHADATYDFK 161
Query: 600 YGVRAVQGGGRSSARETIGR 659 YGVR+VQGGGRSSARETIGR Sbjct: 162 YGVRSVQGGGRSSARETIGR 181
>sp|Q42884|AROC1_SOLLC Chorismate synthase 1, chloroplastic OS=Solanum lycopersicum GN=CS1 PE=2 SV=1 Length = 440
Score = 244 bits (624), Expect = 2e-64 Identities = 118/140 (84%), Positives = 126/140 (90%) Frame = +3
Query: 240 RLEVYAGVGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSR 419 RLE+ A G+TFGN FRVTT+GESHGGGVGC+IDG PPRLPL+E+DMQ ELDRRRPGQSR Sbjct: 49 RLEIQAA-GSTFGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSR 107
Query: 420 ITTPRKETDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFK 599 ITTPRKETDTC I SG ADGLT G+PI V VPNTDQRG DY EMSLAYRPSHADATYDFK Sbjct: 108 ITTPRKETDTCKISSGTADGLTTGSPIKVEVPNTDQRGNDYSEMSLAYRPSHADATYDFK 167
Query: 600 YGVRAVQGGGRSSARETIGR 659 YGVR+VQGGGRSSARETIGR Sbjct: 168 YGVRSVQGGGRSSARETIGR 187
>sp|P27793|AROC_CORSE Chorismate synthase, chloroplastic OS=Corydalis sempervirens PE=1 SV=1 Length = 447
Score = 231 bits (589), Expect = 3e-60 Identities = 107/132 (81%), Positives = 120/132 (90%) Frame = +3
Query: 264 GNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKET 443 G++FG +F+VTTYGESHGGGVGCVIDG PPR P++EAD+Q +LDRRRPGQSRITTPRKET Sbjct: 60 GSSFGKVFQVTTYGESHGGGVGCVIDGCPPRFPISEADIQSDLDRRRPGQSRITTPRKET 119
Query: 444 DTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVRAVQG 623 DTC I SGVADG T G+PI ++VPNTDQRG DY EM+ AYRPSHADATYDFKYGVR+VQG Sbjct: 120 DTCKIYSGVADGFTTGSPIHISVPNTDQRGNDYSEMAKAYRPSHADATYDFKYGVRSVQG 179
Query: 624 GGRSSARETIGR 659 GGRSSARETIGR Sbjct: 180 GGRSSARETIGR 191
>sp|P57720|AROC_ARATH Chorismate synthase, chloroplastic OS=Arabidopsis thaliana GN=EMB1144 PE=2 SV=2 Length = 436
Score = 228 bits (581), Expect = 2e-59 Identities = 106/132 (80%), Positives = 121/132 (91%) Frame = +3
Query: 264 GNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKET 443 G+++G FRV+T+GESHGGGVGC+IDG PPR+PLTE+D+QF+LDRRRPGQSRITTPRKET Sbjct: 52 GSSYGTHFRVSTFGESHGGGVGCIIDGCPPRIPLTESDLQFDLDRRRPGQSRITTPRKET 111
Query: 444 DTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVRAVQG 623 DTC I SGV++G+T GTPI V VPNTDQRG DY EMS+AYRPSHADATYD KYGVR+VQG Sbjct: 112 DTCRISSGVSEGMTTGTPIHVFVPNTDQRGLDYSEMSVAYRPSHADATYDMKYGVRSVQG 171
Query: 624 GGRSSARETIGR 659 GGRSSARETIGR Sbjct: 172 GGRSSARETIGR 183
>sp|Q31RS5|AROC_SYNE7 Chorismate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=aroC PE=3 SV=1 Length = 362
Score = 214 bits (545), Expect = 4e-55 Identities = 101/133 (75%), Positives = 116/133 (87%) Frame = +3
Query: 261 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 440 +G++FG+LFR++T+GESHGGGVG VIDG PPRL ++EA++QFELDRRRPGQS+ITTPRKE Sbjct: 1 MGSSFGHLFRISTFGESHGGGVGVVIDGCPPRLEISEAEIQFELDRRRPGQSKITTPRKE 60
Query: 441 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVRAVQ 620 D C ILSGV DG TLGTPIA+ V N DQR DY EM +AYRPSHADATYD KYG+RAV Sbjct: 61 ADQCEILSGVVDGKTLGTPIAIVVRNKDQRSQDYSEMQVAYRPSHADATYDAKYGIRAVA 120
Query: 621 GGGRSSARETIGR 659 GGGRSSARETIGR Sbjct: 121 GGGRSSARETIGR 133
>sp|Q5N2I0|AROC_SYNP6 Chorismate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=aroC PE=3 SV=1 Length = 362
Score = 211 bits (538), Expect = 2e-54 Identities = 100/133 (75%), Positives = 115/133 (86%) Frame = +3
Query: 261 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 440 +G++FG+LFR++T+GESHGGGVG VIDG PPRL ++EA++QFELDRRRPGQS+ITTPRKE Sbjct: 1 MGSSFGHLFRISTFGESHGGGVGVVIDGCPPRLEISEAEIQFELDRRRPGQSKITTPRKE 60
Query: 441 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVRAVQ 620 D C ILSGV DG TL TPIA+ V N DQR DY EM +AYRPSHADATYD KYG+RAV Sbjct: 61 ADQCEILSGVVDGKTLDTPIAIVVRNKDQRSQDYSEMQVAYRPSHADATYDAKYGIRAVA 120
Query: 621 GGGRSSARETIGR 659 GGGRSSARETIGR Sbjct: 121 GGGRSSARETIGR 133
>sp|Q8DLM1|AROC_THEEB Chorismate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=aroC PE=3 SV=1 Length = 363
Score = 205 bits (521), Expect = 2e-52 Identities = 99/133 (74%), Positives = 112/133 (84%) Frame = +3
Query: 261 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 440 +GNTFG+LFRVTT+GESHGGGVG V+DG PPRL L+E D+Q ELDRRRPGQSR+TTPR+E Sbjct: 1 MGNTFGHLFRVTTFGESHGGGVGVVVDGCPPRLELSEVDIQKELDRRRPGQSRLTTPRQE 60
Query: 441 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVRAVQ 620 +D C ILSGV +G TLGTPIA+ V N D R DY EM+ YRPSHADATYD KYG+R Q Sbjct: 61 SDRCEILSGVFEGKTLGTPIAILVRNKDTRPEDYAEMAQVYRPSHADATYDAKYGIRNWQ 120
Query: 621 GGGRSSARETIGR 659 GGGRSSARETIGR Sbjct: 121 GGGRSSARETIGR 133
>sp|B0C2W2|AROC_ACAM1 Chorismate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=aroC PE=3 SV=1 Length = 364
Score = 204 bits (519), Expect = 4e-52 Identities = 97/133 (72%), Positives = 110/133 (82%) Frame = +3
Query: 261 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 440 +GNTFG+LFR+TT+GESHGGGVG VIDG PP++ + D+QFELDRRRPGQSRITTPRKE Sbjct: 1 MGNTFGHLFRITTFGESHGGGVGVVIDGCPPQIEIAAEDIQFELDRRRPGQSRITTPRKE 60
Query: 441 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVRAVQ 620 TDTC I+SG+ G TLGTPI + V N D R DY EM+ YRPSHADATYD KYG+R Q Sbjct: 61 TDTCEIVSGMFQGKTLGTPITILVRNKDTRPQDYSEMAQVYRPSHADATYDAKYGIRNWQ 120
Query: 621 GGGRSSARETIGR 659 GGGRSSARETIGR Sbjct: 121 GGGRSSARETIGR 133
>sp|Q110N5|AROC_TRIEI Chorismate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=aroC PE=3 SV=1 Length = 370
Score = 201 bits (512), Expect = 2e-51 Identities = 95/133 (71%), Positives = 112/133 (84%) Frame = +3
Query: 261 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 440 +GN FG+LFRVTT+GESHGGGVG +IDG PP+L + ++Q+ELDRRRPGQS+ITTPRKE Sbjct: 1 MGNIFGHLFRVTTFGESHGGGVGVIIDGCPPKLEINVKEIQYELDRRRPGQSKITTPRKE 60
Query: 441 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVRAVQ 620 +DTC ILSGV +G TLGTPI + V N D R DYQ+M++ YRPSHADATYD KYG+R Q Sbjct: 61 SDTCEILSGVFEGQTLGTPIMIWVRNKDARPQDYQDMAIKYRPSHADATYDAKYGIRNWQ 120
Query: 621 GGGRSSARETIGR 659 GGGRSSARETIGR Sbjct: 121 GGGRSSARETIGR 133
>sp|P23353|AROC_SYNY3 Chorismate synthase OS=Synechocystis sp. (strain PCC 6803) GN=aroC PE=3 SV=2 Length = 362
Score = 200 bits (509), Expect = 5e-51 Identities = 94/133 (70%), Positives = 111/133 (83%) Frame = +3
Query: 261 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 440 +GNTFG+LFR+TT+GESHGGGVG +IDG PPRL ++ ++Q +LDRRRPGQS+ITTPRKE Sbjct: 1 MGNTFGSLFRITTFGESHGGGVGVIIDGCPPRLEISPEEIQVDLDRRRPGQSKITTPRKE 60
Query: 441 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVRAVQ 620 D C ILSGV +G TLGTPIA+ V N D R DY EM++ YRPSHADATY+ KYG+R Q Sbjct: 61 ADQCEILSGVFEGKTLGTPIAILVRNKDARSQDYNEMAVKYRPSHADATYEAKYGIRNWQ 120
Query: 621 GGGRSSARETIGR 659 GGGRSSARETIGR Sbjct: 121 GGGRSSARETIGR 133
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RTV8 |
Definition |
tr|A9RTV8|A9RTV8_PHYPA Chorismate synthase OS=Physcomitrella patens subsp. patens |
Align length |
140 |
Score (bit) |
252.0 |
E-value |
1.0e-65 |
Report |
|