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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961106
Clone id TST39A01NGRL0009_D13
Library
Length 547
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_D13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AGCAGGAAGACCATTCAGTTAGCCCATCAGACAACTTGGATCCAGCGGATGTAGAAAAAC
TTGAACAAAGAGTGTCTTTTTTGAGAGAGGAAGTGAAGAATAAGAACAAGGTCGTGAAGC
TCTTGATTGATCAGCTACGGGAGCTTATAAAGGACATTTCAATGTGGCAAAGTCCAGGTC
TTTAGTTATCAACAGTCTCTAACCCTTTCAAAAACCAAGTGGGCAGTAATGAGCTGGCCA
TCACCATTACAGTTACAAATAAAAGAGAGATTAAGCAGCACAGGCTGCTGGTTTTAATCC
TGTATCTGATCTATCAGGTTGCCCCATAGCTGTTTTCCATACATAATGTGGGATCATTTT
GGATTCATTTTTCTTTTGATGGAAATGTTGCAATGGCTGAATTGAGCGCACGATGGTGTT
CTCAGCTTGTTAATGACGATGAGGGTGTTTGCGCAGGGCCATTTGCGATCGTAAGACATG
AAGTTCCACCGAGAAAGCTAATACTTAAGATCATCAACTGAACAAGCTGGTTGTCATGTT
TTTTTGT
■■Homology search results ■■ -
sp_hit_id P35123
Definition sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus
Align length 47
Score (bit) 30.8
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961106|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_D13, 5'
         (547 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=...    31   4.5  
sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein OS=As...    30   5.8  
sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=...    30   7.7  
sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=...    30   7.7  

>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus
           musculus GN=Usp4 PE=2 SV=2
          Length = 962

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 168 ATLKCPL*APVADQSRASRPCSYSSLPLS-KKTLFVQVFLHPLDPSC 31
           +TL CP  A V   S    P  Y +LPL  KK   ++VFL P DP C
Sbjct: 457 STLVCPECAKV---SVTFDPFCYLTLPLPLKKDRIMEVFLVPADPQC 500


>sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein
           OS=Astasia longa GN=roaA PE=3 SV=1
          Length = 519

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 176 WTLPH*NVLYKLP*LINQELHDLVLILHFLS--QKRHSLFKFFYIRWIQV 33
           W     N++  +  L + E+H L   L+F S  +K+H LFK FY R++ V
Sbjct: 15  WDFIKWNLVDNIISLFHHEIHILSKNLNFRSIKKKQHLLFKSFYTRFVSV 64


>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4
           OS=Pongo abelii GN=USP4 PE=2 SV=1
          Length = 963

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 168 ATLKCPL*APVADQSRASRPCSYSSLPLS-KKTLFVQVFLHPLDPSC 31
           +TL CP  A V   S    P  Y +LPL  KK   ++VFL P DP C
Sbjct: 457 STLVCPECAKV---SVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHC 500


>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4
           OS=Homo sapiens GN=USP4 PE=1 SV=3
          Length = 963

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 168 ATLKCPL*APVADQSRASRPCSYSSLPLS-KKTLFVQVFLHPLDPSC 31
           +TL CP  A V   S    P  Y +LPL  KK   ++VFL P DP C
Sbjct: 457 STLVCPECAKV---SVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHC 500
tr_hit_id A9PFN7
Definition tr|A9PFN7|A9PFN7_POPTR Putative uncharacterized protein OS=Populus trichocarpa
Align length 58
Score (bit) 55.5
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961106|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_D13, 5'
         (547 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9PFN7|A9PFN7_POPTR Putative uncharacterized protein OS=Popul...    55   2e-06
tr|A5AWU6|A5AWU6_VITVI Putative uncharacterized protein (Chromos...    54   5e-06
tr|B6UHG8|B6UHG8_MAIZE Putative uncharacterized protein OS=Zea m...    53   1e-05
tr|B8AT76|B8AT76_ORYSI Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|Q9FMV4|Q9FMV4_ARATH Genomic DNA, chromosome 5, P1 clone:MLE2 ...    43   0.012
tr|Q8LE55|Q8LE55_ARATH Putative uncharacterized protein OS=Arabi...    42   0.016
tr|Q681J6|Q681J6_ARATH Putative uncharacterized protein At5g6348...    41   0.036

>tr|A9PFN7|A9PFN7_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 185

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 30/58 (51%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
 Frame = +3

Query: 12  HSVSPSDNLDPAD---VEKLEQRVSFLREEXXXXXXXXXLLIDQLRELIKDISMWQSP 176
           H   P +   PAD   +EKLE+R S LR+E         LLIDQLRELI DIS WQ P
Sbjct: 125 HKAKPFETSSPADQAEIEKLEERASNLRKELAKKNTYVKLLIDQLRELIADISTWQGP 182


>tr|A5AWU6|A5AWU6_VITVI Putative uncharacterized protein (Chromosome
           chr17 scaffold_16, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00017960001 PE=4 SV=1
          Length = 174

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 27/46 (58%), Positives = 32/46 (69%)
 Frame = +3

Query: 39  DPADVEKLEQRVSFLREEXXXXXXXXXLLIDQLRELIKDISMWQSP 176
           D A++EKLE+R S LR+E         LLIDQLR+LI DIS WQSP
Sbjct: 126 DQAEIEKLEERASNLRKELADKNKYLKLLIDQLRDLITDISTWQSP 171


>tr|B6UHG8|B6UHG8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 172

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 26/52 (50%), Positives = 33/52 (63%)
 Frame = +3

Query: 21  SPSDNLDPADVEKLEQRVSFLREEXXXXXXXXXLLIDQLRELIKDISMWQSP 176
           S     D A++E+LE+  S LR+E         LLIDQLR+LI DI+MWQSP
Sbjct: 118 STESEADHAEIERLEEHASALRKEIESKNKQVKLLIDQLRDLIADIAMWQSP 169


>tr|B8AT76|B8AT76_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15660 PE=4 SV=1
          Length = 197

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 26/52 (50%), Positives = 32/52 (61%)
 Frame = +3

Query: 21  SPSDNLDPADVEKLEQRVSFLREEXXXXXXXXXLLIDQLRELIKDISMWQSP 176
           S     D A++E+LE+  S LR+E         LLIDQL +LI DISMWQSP
Sbjct: 143 STEHKADQAEIERLEEHASALRKEIESKNKHVKLLIDQLHDLISDISMWQSP 194


>tr|Q9FMV4|Q9FMV4_ARATH Genomic DNA, chromosome 5, P1 clone:MLE2
           (At1g17730) OS=Arabidopsis thaliana GN=At5g63480 PE=2
           SV=1
          Length = 189

 Score = 42.7 bits (99), Expect = 0.012
 Identities = 22/43 (51%), Positives = 27/43 (62%)
 Frame = +3

Query: 48  DVEKLEQRVSFLREEXXXXXXXXXLLIDQLRELIKDISMWQSP 176
           ++EKLE++   LR E          LID+LRELI DIS WQSP
Sbjct: 144 EIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQSP 186


>tr|Q8LE55|Q8LE55_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 178

 Score = 42.4 bits (98), Expect = 0.016
 Identities = 22/43 (51%), Positives = 26/43 (60%)
 Frame = +3

Query: 48  DVEKLEQRVSFLREEXXXXXXXXXLLIDQLRELIKDISMWQSP 176
           ++EKLE+    LR E          LID+LRELI DIS WQSP
Sbjct: 133 EIEKLEEEALSLRMEIAKKNVHVKELIDKLRELIADISTWQSP 175


>tr|Q681J6|Q681J6_ARATH Putative uncharacterized protein At5g63480
           (Fragment) OS=Arabidopsis thaliana GN=At5g63480 PE=2
           SV=1
          Length = 184

 Score = 41.2 bits (95), Expect = 0.036
 Identities = 22/43 (51%), Positives = 26/43 (60%)
 Frame = +3

Query: 48  DVEKLEQRVSFLREEXXXXXXXXXLLIDQLRELIKDISMWQSP 176
           ++EKLE++   LR E          LID LRELI DIS WQSP
Sbjct: 139 EIEKLEEQALSLRMEIAKKNVHVKELIDILRELIADISTWQSP 181