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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961118
Clone id TST39A01NGRL0009_E01
Library
Length 665
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_E01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTTACTTTTCATTTCGTTACTTCTCGGTACGTGGAAGCGCAATTCAACACCCTCTTCTTC
TTCTCAAAACTGGGACGGAAGGATTCGAACCTCCGAGTGACGGGACCAAAACCCGCTGCC
TTACCGCTTGGCCACGCCCCACAAATGATTATTGCAACCAATATCTCACACATCGGCTTT
ACTGTCAACCGCTTCCCCCAACTTAACGACTCAACCTCCTAGGAAAAAGCAACTGAATAG
GTGAATTGAATTTGATAGGAATTGCCGGTATTTGGCGAAAGAAAACTAATTGGAAGCCTA
TTTAGGAGAGATTTGGTTTAACTAAGAATTGAATCTCCTGATACTTACCTCATTCAGATG
CAGAAATCTATGATAATACGTAATCCTATTTATGTACGTGAACAAAAAAATCTAGATGTC
CGACAAGTTGCCCAATCAAACAATAAAGTATAAAAACATAGACTTGTTAATAGAAAATCA
CATTTCCATAACTGGAGAGTAGACATGACAGTCTCGTACAGTATTTATCTAGAAAATTCT
CTTCACTTTGGCGATGCCCTTTTGGCCAAGTTACCCGAAGCTTATGCCATTTTCGATCCA
ATTGTAGACGTAATGCCGGTAATCCCGGTGTTCTTTCTCCTCCTAGCTTTTGTTTGGCAA
GCCGC
■■Homology search results ■■ -
sp_hit_id Q85FN7
Definition sp|Q85FN7|PSBK_ADICA Photosystem II reaction center protein K OS=Adiantum capillus-veneris
Align length 53
Score (bit) 70.5
E-value 8.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961118|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_E01, 5'
         (665 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FN7|PSBK_ADICA Photosystem II reaction center protein K OS...    70   8e-12
sp|Q6YXN4|PSBK_PHYPA Photosystem II reaction center protein K OS...    46   2e-04
sp|Q8MA00|PSBK_CHAGL Photosystem II reaction center protein K OS...    42   0.002
sp|P10348|PSBK_MARPO Photosystem II reaction center protein K OS...    40   0.008
sp|Q32RP3|PSBK_ZYGCR Photosystem II reaction center protein K OS...    40   0.011
sp|Q85BB6|PSBK_ANTFO Photosystem II reaction center protein K OS...    39   0.019
sp|Q32RW6|PSBK_STAPU Photosystem II reaction center protein K OS...    37   0.094
sp|P56782|PSBK_ARATH Photosystem II reaction center protein K OS...    36   0.16 
sp|Q06FX8|PSBK_PELHO Photosystem II reaction center protein K OS...    36   0.21 
sp|Q9MTL6|PSBK_OENEH Photosystem II reaction center protein K OS...    36   0.21 
sp|Q9MUS0|PSBK_MESVI Photosystem II reaction center protein K OS...    36   0.21 
sp|Q70Y14|PSBK_AMBTC Photosystem II reaction center protein K OS...    36   0.21 
sp|Q5SCX1|PSBK_HUPLU Photosystem II reaction center protein K OS...    35   0.27 
sp|Q49L15|PSBK_EUCGG Photosystem II reaction center protein K OS...    35   0.27 
sp|Q09MJ5|PSBK_CITSI Photosystem II reaction center protein K OS...    35   0.27 
sp|Q3ZJ18|PSBK_PSEAK Photosystem II reaction center protein K OS...    35   0.47 
sp|Q85X72|PSBK_PINKO Photosystem II reaction center protein K OS...    35   0.47 
sp|Q20EY3|PSBK_OLTVI Photosystem II reaction center protein K OS...    35   0.47 
sp|Q0ZJ37|PSBK_VITVI Photosystem II reaction center protein K OS...    34   0.61 
sp|P10347|PSBK_SINAL Photosystem II reaction center protein K OS...    34   0.61 
sp|Q589B1|PSBK_SILLA Photosystem II reaction center protein K OS...    34   0.61 
sp|P41598|PSBK_PINTH Photosystem II reaction center protein K OS...    34   0.61 
sp|Q68S23|PSBK_PANGI Photosystem II reaction center protein K OS...    34   0.61 
sp|Q1KVV2|PSBK_SCEOB Photosystem II reaction center protein K OS...    34   0.79 
sp|Q8WI34|PSBK_PSINU Photosystem II reaction center protein K OS...    34   0.79 
sp|Q06GS7|PSBK_PIPCE Photosystem II reaction center protein K OS...    34   0.79 
sp|Q3BAQ9|PSBK_PHAAO Photosystem II reaction center protein K OS...    34   0.79 
sp|Q06RE8|PSBK_JASNU Photosystem II reaction center protein K OS...    34   0.79 
sp|O78504|PSBK_GUITH Photosystem II reaction center protein K OS...    34   0.79 
sp|Q06H14|PSBK_DRIGR Photosystem II reaction center protein K OS...    34   0.79 

>sp|Q85FN7|PSBK_ADICA Photosystem II reaction center protein K
           OS=Adiantum capillus-veneris GN=psbK PE=2 SV=1
          Length = 58

 Score = 70.5 bits (171), Expect = 8e-12
 Identities = 37/53 (69%), Positives = 37/53 (69%)
 Frame = +1

Query: 505 MTVSYSIYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           MTVSYSIYLENSLHFGDALLAKLPEAYA                LLLAFVWQA
Sbjct: 1   MTVSYSIYLENSLHFGDALLAKLPEAYAIFDPIVDVMPVIPVFFLLLAFVWQA 53


>sp|Q6YXN4|PSBK_PHYPA Photosystem II reaction center protein K
           OS=Physcomitrella patens GN=psbK PE=3 SV=1
          Length = 58

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 23/53 (43%), Positives = 28/53 (52%)
 Frame = +1

Query: 505 MTVSYSIYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           M   ++IYL+N+ H    +LAKLPEAYA                 LLAFVWQA
Sbjct: 1   MLAIFNIYLDNAFHLNGIILAKLPEAYAIFDPIVDVMPIIPVFFFLLAFVWQA 53


>sp|Q8MA00|PSBK_CHAGL Photosystem II reaction center protein K
           OS=Chaetosphaeridium globosum GN=psbK PE=3 SV=1
          Length = 58

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 22/48 (45%), Positives = 27/48 (56%)
 Frame = +1

Query: 520 SIYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           S + ++S +F +A LAKLPEAYA                LLLAFVWQA
Sbjct: 6   STFFDSSSNFSEAFLAKLPEAYAIFDPIVDVMPIIPVFFLLLAFVWQA 53


>sp|P10348|PSBK_MARPO Photosystem II reaction center protein K
           OS=Marchantia polymorpha GN=psbK PE=3 SV=1
          Length = 55

 Score = 40.4 bits (93), Expect = 0.008
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +1

Query: 517 YSIYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           ++IYLEN+ +      AKLPEAY+                 LLAFVWQA
Sbjct: 2   FNIYLENAFYLNGITFAKLPEAYSIFDPIVDVMPIIPLFFFLLAFVWQA 50


>sp|Q32RP3|PSBK_ZYGCR Photosystem II reaction center protein K
           OS=Zygnema circumcarinatum GN=psbK PE=3 SV=2
          Length = 58

 Score = 40.0 bits (92), Expect = 0.011
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 517 YSIYLENSLHFGDA---LLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           + +YL+N L   D+   +LAKLPEAYA                LLLAFVWQA
Sbjct: 2   FDLYLKNLLDLSDSGTVVLAKLPEAYAIFDPIVDVLPVIPVFFLLLAFVWQA 53


>sp|Q85BB6|PSBK_ANTFO Photosystem II reaction center protein K
           OS=Anthoceros formosae GN=psbK PE=2 SV=1
          Length = 55

 Score = 39.3 bits (90), Expect = 0.019
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = +1

Query: 517 YSIYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           + I+LEN+      +L KLPEAYA                 LLAFVWQA
Sbjct: 2   FYIHLENTFDLSSTILVKLPEAYAIFDPIVDVMPIIPLFFFLLAFVWQA 50


>sp|Q32RW6|PSBK_STAPU Photosystem II reaction center protein K
           OS=Staurastrum punctulatum GN=psbK PE=3 SV=1
          Length = 58

 Score = 37.0 bits (84), Expect = 0.094
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 517 YSIYLENSLHF---GDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           ++ YL+  L     G  +LAKLPEAYA                LLLAFVWQA
Sbjct: 2   FNAYLDTVLDLSANGTVILAKLPEAYAIFDPIVDVMPIIPVFFLLLAFVWQA 53


>sp|P56782|PSBK_ARATH Photosystem II reaction center protein K
           OS=Arabidopsis thaliana GN=psbK PE=3 SV=1
          Length = 61

 Score = 36.2 bits (82), Expect = 0.16
 Identities = 20/47 (42%), Positives = 24/47 (51%)
 Frame = +1

Query: 523 IYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           I+  ++L     L+AKLPEAYA                LLLAFVWQA
Sbjct: 10  IFFNSTLFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQA 56


>sp|Q06FX8|PSBK_PELHO Photosystem II reaction center protein K
           OS=Pelargonium hortorum GN=psbK PE=3 SV=1
          Length = 61

 Score = 35.8 bits (81), Expect = 0.21
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = +1

Query: 523 IYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           IYL ++L+       KLPEAYA                 LLAFVWQA
Sbjct: 10  IYLHSALYSSSFFFGKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQA 56


>sp|Q9MTL6|PSBK_OENEH Photosystem II reaction center protein K
           OS=Oenothera elata subsp. hookeri GN=psbK PE=3 SV=1
          Length = 59

 Score = 35.8 bits (81), Expect = 0.21
 Identities = 21/47 (44%), Positives = 23/47 (48%)
 Frame = +1

Query: 523 IYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           I L + L+     LAKLPEAYA                LLLAFVWQA
Sbjct: 8   ICLNSDLYSSRFFLAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQA 54
tr_hit_id A4QM00
Definition tr|A4QM00|A4QM00_PINKO ORF84b OS=Pinus koraiensis
Align length 24
Score (bit) 50.1
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961118|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_E01, 5'
         (665 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4QM00|A4QM00_PINKO ORF84b OS=Pinus koraiensis PE=4 SV=1            50   1e-04
tr|A2T313|A2T313_ANGEV Photosystem II protein K OS=Angiopteris e...    47   0.001
tr|Q57RQ5|Q57RQ5_SALCH Putative RNA OS=Salmonella choleraesuis G...    45   0.003
tr|B8LIF4|B8LIF4_9MARC Photosystem II protein K OS=Lobatiriccard...    45   0.004
tr|B8LIF6|B8LIF6_9MARC Photosystem II protein K OS=Lobatiriccard...    44   0.009
tr|A9QAZ7|A9QAZ7_9SPER Photosystem II protein K (Fragment) OS=Cy...    43   0.020
tr|A6H5E8|A6H5E8_CYCTA Photosystem II protein K OS=Cycas taitung...    43   0.020
tr|Q4FFS7|Q4FFS7_RANMC Photosystem II protein K (Fragment) OS=Ra...    41   0.058
tr|Q4FFS9|Q4FFS9_GINBI Photosystem II protein K (Fragment) OS=Gi...    41   0.076
tr|Q85X74|Q85X74_PINKO ORF47d OS=Pinus koraiensis PE=4 SV=1            40   0.100
tr|B8LIF2|B8LIF2_9MARC Photosystem II protein K OS=Lobatiriccard...    40   0.100
tr|Q5FGR1|Q5FGR1_EHRRG Putative uncharacterized protein OS=Ehrli...    39   0.38 
tr|Q5FCE4|Q5FCE4_EHRRW Putative uncharacterized protein OS=Ehrli...    39   0.38 
tr|A9NAS4|A9NAS4_COXBR Putative uncharacterized protein OS=Coxie...    38   0.65 
tr|A9ZGA2|A9ZGA2_COXBU Putative uncharacterized protein OS=Coxie...    38   0.65 
tr|B5LMN3|B5LMN3_CICAR Photosystem II protein K OS=Cicer arietin...    38   0.65 
tr|A7PKD3|A7PKD3_VITVI Chromosome chr15 scaffold_19, whole genom...    38   0.65 
tr|Q2FW88|Q2FW88_STAA8 Putative uncharacterized protein OS=Staph...    37   0.84 
tr|A6MM19|A6MM19_BUXMI Photosystem II protein K OS=Buxus microph...    37   0.84 
tr|Q3XYJ4|Q3XYJ4_ENTFC Putative uncharacterized protein OS=Enter...    37   1.1  
tr|B8LID6|B8LID6_9MARC Photosystem II protein K OS=Aneura sp. Sh...    36   1.9  
tr|B5SPT9|B5SPT9_9APIA PsbK OS=Ptilimnium nuttallii GN=psbK PE=4...    36   1.9  
tr|B5SPT1|B5SPT1_9APIA PsbK OS=Ptilimnium costatum GN=psbK PE=4 ...    36   1.9  
tr|B0Z5D6|B0Z5D6_OENPA Photosystem II protein K OS=Oenothera par...    36   2.5  
tr|B0Z552|B0Z552_OENGL Photosystem II protein K OS=Oenothera gla...    36   2.5  
tr|B0Z4W8|B0Z4W8_OENBI Photosystem II protein K OS=Oenothera bie...    36   2.5  
tr|B0Z4N4|B0Z4N4_OENAR Photosystem II protein K OS=Oenothera arg...    36   2.5  
tr|A6YGA7|A6YGA7_LEPTE K protein of photosystem II OS=Leptosira ...    36   2.5  
tr|A4QLR6|A4QLR6_NASOF PSII K protein OS=Nasturtium officinale G...    36   2.5  
tr|A4QL02|A4QL02_DRANE PSII K protein OS=Draba nemorosa GN=psbK ...    36   2.5  

>tr|A4QM00|A4QM00_PINKO ORF84b OS=Pinus koraiensis PE=4 SV=1
          Length = 84

 Score = 50.1 bits (118), Expect = 1e-04
 Identities = 22/24 (91%), Positives = 23/24 (95%)
 Frame = +1

Query: 70  LGRKDSNLRVTGPKPAALPLGHAP 141
           LGRKDSNLR+TG KPAALPLGHAP
Sbjct: 34  LGRKDSNLRITGSKPAALPLGHAP 57


>tr|A2T313|A2T313_ANGEV Photosystem II protein K OS=Angiopteris
           evecta GN=psbK PE=4 SV=1
          Length = 58

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 25/53 (47%), Positives = 28/53 (52%)
 Frame = +1

Query: 505 MTVSYSIYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           M V ++IYLEN+    D  LAKLPEAYA                 LLAFVWQA
Sbjct: 1   MLVLFNIYLENNSQLTDTFLAKLPEAYAIFDPIVDVMPVIPLFFFLLAFVWQA 53


>tr|Q57RQ5|Q57RQ5_SALCH Putative RNA OS=Salmonella choleraesuis
           GN=SCH_0700 PE=4 SV=1
          Length = 120

 Score = 45.4 bits (106), Expect = 0.003
 Identities = 19/36 (52%), Positives = 26/36 (72%)
 Frame = +2

Query: 71  WDGRIRTSE*RDQNPLPYRLATPHK*LLQPISHTSA 178
           W  RIRTSE R+QNP+PYRLA P + + +P+ +  A
Sbjct: 84  WGTRIRTSECRNQNPVPYRLAIPQQIIFEPVEYLDA 119


>tr|B8LIF4|B8LIF4_9MARC Photosystem II protein K OS=Lobatiriccardia
           lobata GN=psbK PE=4 SV=1
          Length = 55

 Score = 45.1 bits (105), Expect = 0.004
 Identities = 23/49 (46%), Positives = 27/49 (55%)
 Frame = +1

Query: 517 YSIYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           ++I+L+N  H G  L AKLPEAYA                LLLAFVWQA
Sbjct: 2   FNIFLDNGFHQGGFLFAKLPEAYAIFDPIVDVMPIIPLFFLLLAFVWQA 50


>tr|B8LIF6|B8LIF6_9MARC Photosystem II protein K OS=Lobatiriccardia
           lobata GN=psbK PE=4 SV=1
          Length = 55

 Score = 43.9 bits (102), Expect = 0.009
 Identities = 22/49 (44%), Positives = 25/49 (51%)
 Frame = +1

Query: 517 YSIYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           ++I+LEN  H     L KLPEAYA                LLLAFVWQA
Sbjct: 2   FNIFLENGFHLNGLFLTKLPEAYAIFDPIVDIMPIIPLFFLLLAFVWQA 50


>tr|A9QAZ7|A9QAZ7_9SPER Photosystem II protein K (Fragment) OS=Cycas
           micronesica GN=psbK PE=4 SV=1
          Length = 58

 Score = 42.7 bits (99), Expect = 0.020
 Identities = 23/53 (43%), Positives = 27/53 (50%)
 Frame = +1

Query: 505 MTVSYSIYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           M    +I L+++LH  D  LAKLPEAYA                 LLAFVWQA
Sbjct: 1   MPAMSNICLDDALHLNDLFLAKLPEAYAIFDPVVDVMPIIPVFFFLLAFVWQA 53


>tr|A6H5E8|A6H5E8_CYCTA Photosystem II protein K OS=Cycas
           taitungensis GN=psbK PE=4 SV=1
          Length = 58

 Score = 42.7 bits (99), Expect = 0.020
 Identities = 23/53 (43%), Positives = 27/53 (50%)
 Frame = +1

Query: 505 MTVSYSIYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           M    +I L+++LH  D  LAKLPEAYA                 LLAFVWQA
Sbjct: 1   MPAMSNICLDDALHLNDLFLAKLPEAYAIFDPVVNVMPIIPVLFFLLAFVWQA 53


>tr|Q4FFS7|Q4FFS7_RANMC Photosystem II protein K (Fragment)
           OS=Ranunculus macranthus GN=psbK PE=4 SV=1
          Length = 61

 Score = 41.2 bits (95), Expect = 0.058
 Identities = 23/47 (48%), Positives = 24/47 (51%)
 Frame = +1

Query: 523 IYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           IYL + LH    L AKLPEAYA                LLLAFVWQA
Sbjct: 10  IYLNSILHSSHFLFAKLPEAYAFFNPIVDIMPVIPLFFLLLAFVWQA 56


>tr|Q4FFS9|Q4FFS9_GINBI Photosystem II protein K (Fragment)
           OS=Ginkgo biloba GN=psbK PE=4 SV=1
          Length = 55

 Score = 40.8 bits (94), Expect = 0.076
 Identities = 22/48 (45%), Positives = 25/48 (52%)
 Frame = +1

Query: 520 SIYLENSLHFGDALLAKLPEAYAXXXXXXXXXXXXXXXXLLLAFVWQA 663
           +I L+N  +  D  LAKLPEAYA                LLLAFVWQA
Sbjct: 3   NICLDNVFYLSDPFLAKLPEAYAISDPIVDVMPIIPVFFLLLAFVWQA 50


>tr|Q85X74|Q85X74_PINKO ORF47d OS=Pinus koraiensis PE=4 SV=1
          Length = 47

 Score = 40.4 bits (93), Expect = 0.100
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = -2

Query: 142 VGRGQAVRQRVLVPSLGGSNPSVPVL 65
           +GRGQAVRQ+VL+   GGSNPSVP L
Sbjct: 3   MGRGQAVRQQVLILLFGGSNPSVPDL 28