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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961126
Clone id TST39A01NGRL0009_E09
Library
Length 652
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_E09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTTCGCTCAACGAGCTTGAGACCAGCCAAAAGGACATGGAGGCGTGCCTGTTCCGCTTGT
AGCTCATCGTTCAGCCACATGTGTTTCGTGTACCTTTCTGACAAACTGCAAAGAGTTGGA
GATGAGCAAGCAGTGGGGTTCAACATTAAATTACATGGAACTTCAACCTCCACCTTGGCA
ACATCACTGTTTAAGCAAAGCAGAAATACAGGCAAAGAAATCGAGGTGTATAAAGGACAT
CAGTGGATAATTCATATGCAACCTTCACAGCTGCTATCCATATGGTGGATGGGAAGGAGG
GCACCCTGTACCATTAGGCTTCTGGACCATTTATTCAAATGACTAGCATTAGTGCTATCA
ACCTTCACGCAACAAATGACTAGCATATTTAAATTATGACTGCACTGGAATCTAGGTGGT
TTCTCAGTTTCGACAACCCCGGCTACTTTGGATTGAGATCATTTTGCCATTATGAAGATC
CAGATTTATGGAACACAGAGTGTTGCCCTCGCTTTGATAACAGAAAAGACTTGAATTGCC
GTGCTGCGGCATTATTGGTGTGCTTCTGAAATTTAACTGCAGGCTCAATTTACACTCATG
GAGACGTACAAGCTGATCAAGCAAGTCGGTGATGGTACTTATGGCAGTGTTT
■■Homology search results ■■ -
sp_hit_id Q6Z8C8
Definition sp|Q6Z8C8|CDKF4_ORYSJ Cyclin-dependent kinase F-4 OS=Oryza sativa subsp. japonica
Align length 18
Score (bit) 32.0
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961126|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_E09, 5'
         (652 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6Z8C8|CDKF4_ORYSJ Cyclin-dependent kinase F-4 OS=Oryza sativ...    32   2.9  
sp|Q55FJ6|Y8078_DICDI Probable serine/threonine-protein kinase D...    32   3.8  
sp|Q62726|ICK_RAT Serine/threonine-protein kinase ICK OS=Rattus ...    31   6.5  
sp|Q9JKV2|ICK_MOUSE Serine/threonine-protein kinase ICK OS=Mus m...    31   6.5  
sp|B0JZD0|CTL5_XENTR Choline transporter-like protein 5 OS=Xenop...    31   6.5  
sp|Q5ZL33|STRAP_CHICK Serine-threonine kinase receptor-associate...    30   8.5  

>sp|Q6Z8C8|CDKF4_ORYSJ Cyclin-dependent kinase F-4 OS=Oryza sativa
           subsp. japonica GN=CDKF-4 PE=2 SV=1
          Length = 459

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 12/18 (66%), Positives = 17/18 (94%)
 Frame = +1

Query: 598 METYKLIKQVGDGTYGSV 651
           M+ +K+IK+VGDGT+GSV
Sbjct: 1   MDRFKMIKEVGDGTFGSV 18


>sp|Q55FJ6|Y8078_DICDI Probable serine/threonine-protein kinase
           DDB_G0268078 OS=Dictyostelium discoideum GN=DDB_G0268078
           PE=3 SV=1
          Length = 507

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +1

Query: 598 METYKLIKQVGDGTYGSV 651
           ME Y+ IKQVGDG YG V
Sbjct: 1   MEKYQFIKQVGDGAYGDV 18


>sp|Q62726|ICK_RAT Serine/threonine-protein kinase ICK OS=Rattus
           norvegicus GN=Ick PE=1 SV=1
          Length = 629

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +1

Query: 598 METYKLIKQVGDGTYGSV 651
           M  Y  IKQ+GDGTYGSV
Sbjct: 1   MNRYTTIKQLGDGTYGSV 18


>sp|Q9JKV2|ICK_MOUSE Serine/threonine-protein kinase ICK OS=Mus
           musculus GN=Ick PE=2 SV=2
          Length = 629

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +1

Query: 598 METYKLIKQVGDGTYGSV 651
           M  Y  IKQ+GDGTYGSV
Sbjct: 1   MNRYTTIKQLGDGTYGSV 18


>sp|B0JZD0|CTL5_XENTR Choline transporter-like protein 5 OS=Xenopus
           tropicalis GN=slc44a5 PE=2 SV=1
          Length = 714

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 74  ATCVSCTFLTNCKELEMSKQWGSTLNYMELQPPPWQHHCLSKAEIQAKKSR 226
           A CV   FL  C++LE +    S   YM     P  H  L K EI +KK++
Sbjct: 667 AMCVDTLFLCFCEDLERNNGSSSKPYYMS----PNLHRILGKKEILSKKAK 713


>sp|Q5ZL33|STRAP_CHICK Serine-threonine kinase receptor-associated
           protein OS=Gallus gallus GN=STRAP PE=2 SV=2
          Length = 350

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 187 LFKQSRNTGKEIEVYKGHQWIIH 255
           L+K   NTG+E+E YKGH   IH
Sbjct: 247 LYKYDYNTGEELESYKGHFGPIH 269
tr_hit_id Q5VRL6
Definition tr|Q5VRL6|Q5VRL6_ORYSJ Myb-binding protein OS=Oryza sativa subsp. japonica
Align length 18
Score (bit) 34.7
E-value 5.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961126|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_E09, 5'
         (652 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5VRL6|Q5VRL6_ORYSJ Myb-binding protein OS=Oryza sativa subsp...    35   5.2  
tr|B8B1M8|B8B1M8_ORYSI Putative uncharacterized protein OS=Oryza...    35   5.2  
tr|A3B7S7|A3B7S7_ORYSJ Putative uncharacterized protein OS=Oryza...    35   5.2  
tr|Q9C5K4|Q9C5K4_ARATH Putative kinase OS=Arabidopsis thaliana G...    34   6.8  
tr|Q3E9Z3|Q3E9Z3_ARATH Uncharacterized protein At4g19110.2 OS=Ar...    34   6.8  

>tr|Q5VRL6|Q5VRL6_ORYSJ Myb-binding protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0019F11.22 PE=2 SV=1
          Length = 484

 Score = 34.7 bits (78), Expect = 5.2
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +1

Query: 598 METYKLIKQVGDGTYGSV 651
           ME YK+IK+VGDGT+GSV
Sbjct: 1   MERYKIIKEVGDGTFGSV 18


>tr|B8B1M8|B8B1M8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21386 PE=4 SV=1
          Length = 419

 Score = 34.7 bits (78), Expect = 5.2
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +1

Query: 598 METYKLIKQVGDGTYGSV 651
           ME YK+IK+VGDGT+GSV
Sbjct: 1   MERYKIIKEVGDGTFGSV 18


>tr|A3B7S7|A3B7S7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019099 PE=4 SV=1
          Length = 462

 Score = 34.7 bits (78), Expect = 5.2
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +1

Query: 598 METYKLIKQVGDGTYGSV 651
           ME YK+IK+VGDGT+GSV
Sbjct: 1   MERYKIIKEVGDGTFGSV 18


>tr|Q9C5K4|Q9C5K4_ARATH Putative kinase OS=Arabidopsis thaliana
           GN=At4g19110 PE=2 SV=1
          Length = 461

 Score = 34.3 bits (77), Expect = 6.8
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +1

Query: 598 METYKLIKQVGDGTYGSV 651
           M+ YKLIK+VGDGT+GSV
Sbjct: 1   MDRYKLIKEVGDGTFGSV 18


>tr|Q3E9Z3|Q3E9Z3_ARATH Uncharacterized protein At4g19110.2
           OS=Arabidopsis thaliana GN=At4g19110 PE=4 SV=1
          Length = 464

 Score = 34.3 bits (77), Expect = 6.8
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +1

Query: 598 METYKLIKQVGDGTYGSV 651
           M+ YKLIK+VGDGT+GSV
Sbjct: 1   MDRYKLIKEVGDGTFGSV 18