NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961131
Clone id TST39A01NGRL0009_E14
Library
Length 547
Definition Adiantum capillus-veneris CHUP1B mRNA for chloroplast unusual　 positioning 1B, partial cds
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAGAAATTGGAAAATTGCGGCTACTCTATTGATTTCCCTGCAAACATCACATCAAAGGGC
GGATGAGTAGAATGCAACGTTATGGAACCCAGAATCCAAACTTGAGGAGATTACATGTTT
GTTGTCCGCGTGGTTCTTGCAGTAGCACTCTCTTTCGTCGCGGTCACATTTGCGCAGCGA
AAAGACAATCATAGCCGGGATCATCGGTCTGCAGAGCCGGTAGAAGAAGACAGCGGTGAT
GGCAAGGAGATATACACTTATGCAGATGCATGTGCAAACTCGAAAGAGAAGGAGGAGGAA
GAAGTTAAGTGTGTGAGTGCCTGCAGTCCTACTCTAAGTTGCAAGAGTTACCAAGAGAAT
GATCAGCTCCTTCTACCGGAATTTGATGATTTATTCAATGGAGGTATGAATTTTCCCTCT
GATTCAGAGAAGTCAAGATTGAAGTATGATTCGGACGATAGTGTCGAGTCAAAAAGGTAT
GAGTCAAACTCCGAAGATGATGAGGCTTTGGAGATATTTGAAGCCTTGACGGCATCTTCT
AAGCAAA
■■Homology search results ■■ -
sp_hit_id P75980
Definition sp|P75980|YMFO_ECOLI Putative uncharacterized protein ymfO OS=Escherichia coli (strain K12)
Align length 52
Score (bit) 31.2
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961131|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_E14, 5'
         (547 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P75980|YMFO_ECOLI Putative uncharacterized protein ymfO OS=Es...    31   3.4  
sp|Q9WUT7|CCR9_MOUSE C-C chemokine receptor type 9 OS=Mus muscul...    31   4.4  
sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberel...    30   7.7  

>sp|P75980|YMFO_ECOLI Putative uncharacterized protein ymfO
           OS=Escherichia coli (strain K12) GN=ymfO PE=5 SV=1
          Length = 157

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = -2

Query: 279 VCTCICISVYLLAITAVFFYRLCR--PMIPAMIVFSLRKCDR----DERECY 142
           V TC+C+     A     F  +    P+ P  +V++L +C R    D RECY
Sbjct: 103 VVTCLCLRGNFYAYKVKAFGEVAELLPVDPGCVVYALGRCQRWPEGDRRECY 154


>sp|Q9WUT7|CCR9_MOUSE C-C chemokine receptor type 9 OS=Mus musculus
           GN=Ccr9 PE=2 SV=1
          Length = 369

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 10/41 (24%)
 Frame = -3

Query: 488 FDSYLFDSTLSSESYFNLDFS----------ESEGKFIPPL 396
           FD + +DST S++ Y NL+FS          +    F+PPL
Sbjct: 14  FDDFSYDSTASTDDYMNLNFSSFFCKKNNVRQFASHFLPPL 54


>sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberella
           zeae GN=DRS1 PE=3 SV=1
          Length = 796

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 355 ENDQLLLPEFDDLFNGGMNFPSDSEKSRLKYDSDDSVESKRYESNSEDDEA 507
           ++D++L    DD F  GMN  SD+E+S  + + DD  E +      +DDEA
Sbjct: 158 DDDEVLA---DDAF--GMNVASDAEESGDEKEEDDEEEQESGVEVEDDDEA 203
tr_hit_id B3IYT8
Definition tr|B3IYT8|B3IYT8_ADICA Chloroplast unusual positioning 1B OS=Adiantum capillus-veneris
Align length 124
Score (bit) 206.0
E-value 8.0e-52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961131|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_E14, 5'
         (547 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3IYT8|B3IYT8_ADICA Chloroplast unusual positioning 1B OS=Adi...   206   8e-52
tr|B3IYT7|B3IYT7_ADICA Chloroplast unusual positioning 1A OS=Adi...   112   1e-23
tr|A9NQE4|A9NQE4_PICSI Putative uncharacterized protein OS=Picea...    41   0.036
tr|Q59M49|Q59M49_CANAL Putative uncharacterized protein OS=Candi...    36   1.5  
tr|Q54IL3|Q54IL3_DICDI Putative uncharacterized protein OS=Dicty...    34   5.8  
tr|Q6AU09|Q6AU09_ORYSJ Putative Fip1 motif containing protein (F...    33   9.8  
tr|Q0DNZ7|Q0DNZ7_ORYSJ Os03g0725100 protein (Fragment) OS=Oryza ...    33   9.8  
tr|B8AQS0|B8AQS0_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.8  
tr|A3AM91|A3AM91_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.8  

>tr|B3IYT8|B3IYT8_ADICA Chloroplast unusual positioning 1B
           OS=Adiantum capillus-veneris GN=CHUP1B PE=2 SV=1
          Length = 1030

 Score =  206 bits (523), Expect = 8e-52
 Identities = 104/124 (83%), Positives = 104/124 (83%)
 Frame = +1

Query: 175 QRKDNHSRDHRSAEPVEEDSGDGKEIYTYADXXXXXXXXXXXXXXXXXXXXPTLSCKSYQ 354
           QRKDNHSRDHRSAEPVEEDSGDGKEIYTYAD                    PTLSCKSYQ
Sbjct: 21  QRKDNHSRDHRSAEPVEEDSGDGKEIYTYADACANSKEKEEEEVKCVSACSPTLSCKSYQ 80

Query: 355 ENDQLLLPEFDDLFNGGMNFPSDSEKSRLKYDSDDSVESKRYESNSEDDEALEIFEALTA 534
           ENDQLLLPEFDDLFNGGMNFPSDSEKSRLKYDSDDSVESKRYESNSEDDEALEIFEALTA
Sbjct: 81  ENDQLLLPEFDDLFNGGMNFPSDSEKSRLKYDSDDSVESKRYESNSEDDEALEIFEALTA 140

Query: 535 SSKQ 546
           SSKQ
Sbjct: 141 SSKQ 144


>tr|B3IYT7|B3IYT7_ADICA Chloroplast unusual positioning 1A
           OS=Adiantum capillus-veneris GN=CHUP1A PE=2 SV=1
          Length = 1048

 Score =  112 bits (281), Expect = 1e-23
 Identities = 68/134 (50%), Positives = 80/134 (59%), Gaps = 15/134 (11%)
 Frame = +1

Query: 175 QRKDNHSRDHRSAEPVEEDS---GDGKEIYTYADXXXXXXXXXXXXXXXXXXXX--PTLS 339
           Q K   S   +  EP  E+     DGKEIYTYAD                      P LS
Sbjct: 20  QLKGKRSAPLKQLEPPPEEEIFDEDGKEIYTYADAADASKGEEEEVKRISISVCASPALS 79

Query: 340 CKSYQENDQLLLPEFDDLFNGG--MNFPSDSE--------KSRLKYDSDDSVESKRYESN 489
            KS+Q+NDQLLLPE DDLF GG  + FPSDSE        KS+LKYDSDDS +S+RY+SN
Sbjct: 80  TKSFQDNDQLLLPEIDDLFQGGTVVEFPSDSERSVRFRDDKSKLKYDSDDSFDSRRYDSN 139

Query: 490 SEDDEALEIFEALT 531
           SEDDEAL++FE+LT
Sbjct: 140 SEDDEALDLFESLT 153


>tr|A9NQE4|A9NQE4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 195

 Score = 41.2 bits (95), Expect = 0.036
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
 Frame = +1

Query: 328 PTLSCKSYQENDQLLLPEFDDLFNGGMNFPSDS--------EKSRLKYDS---DDSVESK 474
           P+LS KS+ + +Q+LLPEF+DL +  + F S+         EK+ L Y++    +S E  
Sbjct: 77  PSLSRKSFSDGEQILLPEFEDLLSSSLEFSSEKGSLTKTNFEKASLSYEATMDSNSAELD 136

Query: 475 RYESNSEDDEALEI 516
           R  +  ++ E  E+
Sbjct: 137 RLRNLVKELEEREV 150


>tr|Q59M49|Q59M49_CANAL Putative uncharacterized protein OS=Candida
           albicans GN=NOC2 PE=4 SV=1
          Length = 714

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 385 DDLFNGGMNFPSDSEKSRLKYDSDDSVESKRYESNSEDDEALE 513
           DD F GG   P +  K++ K D+ +  E +   S  ED+EA++
Sbjct: 67  DDFFGGGFEVPKEKNKNKNKQDTIEENEEEDSSSEEEDEEAMK 109


>tr|Q54IL3|Q54IL3_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0188049 PE=4 SV=1
          Length = 853

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +1

Query: 334 LSCKSYQENDQLLLPEFDDLFNGGMNFPSDSEKSRLKYDSDDSVESKRYESNSEDDEALE 513
           +S +  Q ND +   + ++L N   +   + ++    YD DD  + +  E NS+DD+A  
Sbjct: 190 ISNEEIQSNDSI---DNEELNNENCDSDEEEQQDNSSYDDDDDEDGEYDEDNSDDDDAYV 246

Query: 514 IFEAL 528
            F+ L
Sbjct: 247 SFKDL 251


>tr|Q6AU09|Q6AU09_ORYSJ Putative Fip1 motif containing protein (Fip1
            motif family protein, expressed) OS=Oryza sativa subsp.
            japonica GN=OSJNBb0122C16.2 PE=4 SV=1
          Length = 1379

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 343  KSYQENDQLLLPEFDDLFNGGMNFPSDSEKSRLKYDSDDSVESKRYESNS 492
            K  +EN + + PE +D+ +G   +    + +R K + DD ++ KR + N+
Sbjct: 959  KKDEENMRRMKPENEDIVHGQHGYRGRDDPNRRKRERDDGIDQKRRDDNA 1008


>tr|Q0DNZ7|Q0DNZ7_ORYSJ Os03g0725100 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os03g0725100 PE=4 SV=1
          Length = 661

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 343 KSYQENDQLLLPEFDDLFNGGMNFPSDSEKSRLKYDSDDSVESKRYESNS 492
           K  +EN + + PE +D+ +G   +    + +R K + DD ++ KR + N+
Sbjct: 241 KKDEENMRRMKPENEDIVHGQHGYRGRDDPNRRKRERDDGIDQKRRDDNA 290


>tr|B8AQS0|B8AQS0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13355 PE=4 SV=1
          Length = 1140

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 343 KSYQENDQLLLPEFDDLFNGGMNFPSDSEKSRLKYDSDDSVESKRYESNS 492
           K  +EN + + PE +D+ +G   +    + +R K + DD ++ KR + N+
Sbjct: 720 KKDEENMRRMKPENEDIVHGQHGYRGRDDPNRRKRERDDGIDQKRRDDNA 769


>tr|A3AM91|A3AM91_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_011913 PE=3 SV=1
          Length = 1459

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 343  KSYQENDQLLLPEFDDLFNGGMNFPSDSEKSRLKYDSDDSVESKRYESNS 492
            K  +EN + + PE +D+ +G   +    + +R K + DD ++ KR + N+
Sbjct: 1039 KKDEENMRRMKPENEDIVHGQHGYRGRDDPNRRKRERDDGIDQKRRDDNA 1088