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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961136
Clone id TST39A01NGRL0009_E19
Library
Length 578
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_E19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GATTGGGGGTCTGCTCTTCTGACCGTTTAGGGTTTCGCTACTGCTGTTAGGGTTTCTCCA
CGTGCCATCGTGATTTAGTTCGAGCTACCGTAATTCGGTCTTGTAGATCACTACAGAATT
TCCGTATCGACGCGAGGTTTTGGGACACAGCAGATCTCTCTCGTTCTACTTCAGATCTGT
GTCCAGGAGCTAAGCGAGCTCAGGATTGATGGAGAATATTTATTCTTTCTGGAGTCTAAA
TGACAATAATCGGCGCTCTCCCACTGAGATGCAAGAGGATCAAAGCTGGAAAGTAGCAGC
TACCAAGCTTGCTTTTGCGGATCAGATGAGGCTGAAGTTTGATAGGTCTAGATCTGATGC
GAAGGTTGTGGCCCCTCATGAGAAGAACATTAAACAAGCAAAGGGACGATCCAAGGGCAG
AGCTGAAGACATGCTGAAGGGGGAAGGTTTCAACCAGAAGTTTTCGGATGGGGATTTGAG
ATATGGAGATTTGGGTCAGAAGCTTGGAGCAGGTAACATGTCAACATCACAGATTGTTGG
CAGTGCAGATAAACGATTCAAGTCTCTTCCGCCTGCTG
■■Homology search results ■■ -
sp_hit_id Q15UD3
Definition sp|Q15UD3|DNAK_PSEA6 Chaperone protein dnaK OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Align length 99
Score (bit) 32.0
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961136|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_E19, 5'
         (578 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15UD3|DNAK_PSEA6 Chaperone protein dnaK OS=Pseudoalteromonas...    32   2.3  
sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Sacchar...    32   3.0  
sp|Q9TW28|MYOM_DICDI Myosin-M heavy chain OS=Dictyostelium disco...    32   3.0  
sp|P35806|FLGE_CAUCR Flagellar hook protein flgE OS=Caulobacter ...    31   3.9  
sp|Q54S59|WDR61_DICDI WD repeat-containing protein 61 homolog OS...    30   6.7  
sp|Q9UHP6|RTDR1_HUMAN Rhabdoid tumor deletion region protein 1 O...    30   8.7  

>sp|Q15UD3|DNAK_PSEA6 Chaperone protein dnaK OS=Pseudoalteromonas
           atlantica (strain T6c / BAA-1087) GN=dnaK PE=2 SV=1
          Length = 639

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
 Frame = +2

Query: 251 RRSPTEMQE-DQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKGRSKGRAE 427
           R+ P  MQ   ++ + A  +L+ A Q  +      +DA    P    IK  + + +   E
Sbjct: 253 RKDPLAMQRLKEAGEKAKIELSSAQQTEVNLPYITADAS--GPKHLTIKLTRAKLESLVE 310

Query: 428 DMLKG--EGFNQKFSDGDLRYGDLGQKLGAGNMSTSQIV 538
            M+K   E   Q  +D DL  GD+   +  G  +   +V
Sbjct: 311 KMVKATLEPLKQALADADLSVGDINDIILVGGQTRMPLV 349


>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2
           OS=Saccharomyces cerevisiae GN=SSF2 PE=1 SV=1
          Length = 453

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
 Frame = +2

Query: 266 EMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKG-----RSKGRAED 430
           E  +  S ++ A +   A +MRLK  R +   + +A  +K +K AK      R K RAE+
Sbjct: 355 EFVQKSSEEIKALEKRHAAKMRLKEQRRKEQEENIAK-KKAVKDAKKQRKLERRKARAEE 413

Query: 431 MLKGEGFNQKFSDG------DLRYGDLGQKL 505
             +G+G +   SD       D  Y D+ + L
Sbjct: 414 QGEGQGKDGAMSDDGSSSSEDEHYSDVPEDL 444


>sp|Q9TW28|MYOM_DICDI Myosin-M heavy chain OS=Dictyostelium discoideum
            GN=myoM PE=1 SV=1
          Length = 1737

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 19/100 (19%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
 Frame = +2

Query: 83   SYRNSVL*ITTEFPYRREVLGHSRSLSFYFRSVSRS*ASSGLMENIYSFWSLNDNNRRSP 262
            SYR   +    +F  R   + +S ++     +++ S     ++EN+ S +  N+NN+ + 
Sbjct: 795  SYRRDFI----QFYSRYNCILNSLNIKINLTNINHSNLCKEILENVNSQYKNNNNNKNNN 850

Query: 263  TEM-----QEDQSWKVAATKLAFADQMRLKFDRSRSDAKV 367
             ++         ++++  TK+  +D++ +  ++ R D+ V
Sbjct: 851  NQIVKITTNSKPTFQIGKTKIFISDELYIYLEKKRYDSLV 890


>sp|P35806|FLGE_CAUCR Flagellar hook protein flgE OS=Caulobacter
           crescentus GN=flgE PE=3 SV=2
          Length = 591

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = +2

Query: 341 DRSRSDAKVVAPH---EKNIKQAKGRSKGRAEDMLKGEGFNQKFSDGDLRYGDLGQKLGA 511
           D ++ ++K V P    +  +  +KG  +     MLKG G NQ +++   + GDL    G 
Sbjct: 318 DYAKDNSKGVKPDFEVQIPLSDSKGGQRTVTLSMLKGPGPNQWYAELRAKPGDLANN-GN 376

Query: 512 GNMSTSQIVGSADKRFKS 565
           G +ST  I  + D + K+
Sbjct: 377 GQISTGIIEFTTDGKLKN 394


>sp|Q54S59|WDR61_DICDI WD repeat-containing protein 61 homolog
           OS=Dictyostelium discoideum GN=wdr61 PE=4 SV=1
          Length = 299

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +2

Query: 122 PYRREVLGHSRSLSFYFRSVSRS*----ASSGLMENIYSFWSLNDNNRRSPTEMQEDQSW 289
           PY   +LGHS   SF F  V+ S     ASSG ++     W +      S      DQ+W
Sbjct: 216 PYIASLLGHS---SFIFSLVASSNGDLLASSGSIDRKVCIWDIKTRKLDSSFTAHADQTW 272

Query: 290 KVA 298
            +A
Sbjct: 273 DLA 275


>sp|Q9UHP6|RTDR1_HUMAN Rhabdoid tumor deletion region protein 1
           OS=Homo sapiens GN=RTDR1 PE=2 SV=1
          Length = 348

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = -2

Query: 493 QISISQIPIRKLLVETFPL--QHVFSSALGSS--LCLFNVLLMRGHNLRIRSRPIKLQPH 326
           Q+ + +   ++ +++T  L  Q   + ALGS+  L L   LL    N+R ++    L   
Sbjct: 159 QVEVEEEEFQEFILDTLVLCLQEDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVS 218

Query: 325 LIRKSKLGSCYFPAL-ILLHL 266
           + R+ K   C+F  + IL+HL
Sbjct: 219 ISREGKKQVCHFDVIPILVHL 239
tr_hit_id A9NP04
Definition tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 135
Score (bit) 42.7
E-value 0.014
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961136|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_E19, 5'
         (578 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea...    43   0.014
tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citru...    40   0.093
tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solan...    38   0.35 
tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medic...    38   0.35 
tr|Q8G712|Q8G712_BIFLO Putative uncharacterized protein OS=Bifid...    36   1.8  
tr|B3DU84|B3DU84_BIFLD Subtilisin-like serine protease OS=Bifido...    36   1.8  
tr|Q3T552|Q3T552_BIFLO Endo-alpha-N-acetylgalactosaminidase OS=B...    36   1.8  
tr|B2C4I9|B2C4I9_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    36   1.8  
tr|B2C4I3|B2C4I3_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    36   1.8  
tr|B2C4I2|B2C4I2_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    36   1.8  
tr|B2C4I1|B2C4I1_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    36   1.8  
tr|B2C4I0|B2C4I0_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    36   1.8  
tr|B2C4H8|B2C4H8_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    36   1.8  
tr|B2C4H7|B2C4H7_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    36   1.8  
tr|B2C4H6|B2C4H6_BIFLO EngBF (Fragment) OS=Bifidobacterium longu...    36   1.8  
tr|Q3J402|Q3J402_RHOS4 Rod shape-determining protein MreC OS=Rho...    35   3.9  
tr|A3PIE7|A3PIE7_RHOS1 Rod shape-determining protein MreC OS=Rho...    35   3.9  
tr|Q70AN6|Q70AN6_RHOSH MreC protein OS=Rhodobacter sphaeroides G...    35   3.9  
tr|A4WSY0|A4WSY0_RHOS5 Rod shape-determining protein MreC OS=Rho...    34   5.1  
tr|Q231A2|Q231A2_TETTH Protein kinase domain containing protein ...    34   5.1  

>tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 273

 Score = 42.7 bits (99), Expect = 0.014
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
 Frame = +2

Query: 209 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 388
           M + ++FW L ++ R   +E   DQ+W +AA+KLA  +Q R K DR  S     +  E  
Sbjct: 1   MVDSFAFWQLGESLRGLSSE---DQNWTLAASKLATFEQTRGKSDRINSLEPKTSYAE-- 55

Query: 389 IKQAKGRSKGRAEDMLKGEGFN--QKFSDGDLRYG------DLGQKLGAGNMSTSQ---- 532
           +K   G+S G+ E++   + FN   K ++   + G      ++   +   N +TS     
Sbjct: 56  VKHRGGKSNGKLEEVNDNQ-FNLIWKPAEAGTKVGIVHGGYNINHVINYNNNNTSSNGNN 114

Query: 533 --IVGSADKRFKSLP 571
                S +KRFK+LP
Sbjct: 115 NYNNNSFEKRFKTLP 129


>tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citrus
           paradisi PE=2 SV=1
          Length = 305

 Score = 40.0 bits (92), Expect = 0.093
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
 Frame = +2

Query: 209 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 388
           M+N++SFW L D   R  +   EDQSW  AA++L  A+Q R K +R             N
Sbjct: 1   MDNMHSFWQLGD-ELRGQSRTSEDQSWLRAASRL--AEQTRFKGERM-----------NN 46

Query: 389 IKQAKGRSKGRAEDML------KGEGFNQKFS 466
           +  +KG ++ R  D +        E FN  F+
Sbjct: 47  LDLSKGMTEIRPRDKIMYHEDNNFESFNFNFN 78


>tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solanum
           tuberosum PE=2 SV=1
          Length = 298

 Score = 38.1 bits (87), Expect = 0.35
 Identities = 40/160 (25%), Positives = 60/160 (37%), Gaps = 37/160 (23%)
 Frame = +2

Query: 209 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLA----FADQMRLKFDRSRSDAKVVAP 376
           MEN+ S+W   D   R  ++  ED  W  AA KL+    +  + R   D S+S A+ + P
Sbjct: 1   MENMQSYWQFGD-ELRGQSKASEDHKWSTAALKLSEQMKYKGERRNNLDLSKSSAE-IRP 58

Query: 377 HEKNI-------------------KQAKGRSKGRAEDML--------------KGEGFNQ 457
              ++                   K  +  SK R  D +               G     
Sbjct: 59  RGNHMFQEDNKWESLNFNMLNLESKMTENMSKNRIMDSIYNANPVYLNPNFNSLGNSSLS 118

Query: 458 KFSDGDLRYGDLGQKLGAGNMSTSQIVGSADKRFKSLPPA 577
           KF+  +  Y     K    N+ ++    S DKRFK+LP A
Sbjct: 119 KFNASN--YTKEPSKNNNNNVESTNGNNSVDKRFKTLPAA 156


>tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 302

 Score = 38.1 bits (87), Expect = 0.35
 Identities = 43/162 (26%), Positives = 63/162 (38%), Gaps = 39/162 (24%)
 Frame = +2

Query: 209 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 388
           M+N++SFW L D   R  ++  ED  W + A+KLA   + R K +R  +      P E  
Sbjct: 1   MDNMHSFWQLGD-ELRGHSKASEDHKWLMVASKLA---EQRSKAERFNNLDLSKGPLETR 56

Query: 389 IKQAKGRSKGRAEDMLK------GEGFNQKFSDGDLRYG-----DLGQKLG---AGNMST 526
            +   G  +    D L          F +  S   LR G      + QK     AGNM++
Sbjct: 57  PRDKFGFQEENKFDTLNLSMLNLDSKFTENMSKSSLRNGVYNMNAVYQKSNVNFAGNMNS 116

Query: 527 SQIVG-------------------------SADKRFKSLPPA 577
           ++  G                         + DKRFK+LP A
Sbjct: 117 NKYSGNVQLNKDPHNNNSNNNNNNNENNSNATDKRFKTLPAA 158


>tr|Q8G712|Q8G712_BIFLO Putative uncharacterized protein
           OS=Bifidobacterium longum GN=BL0464 PE=4 SV=1
          Length = 1966

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +2

Query: 245 NNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKGRSKGRA 424
           NN     E+ E  +W++A   + F  Q +  F  +  + K VA +   + Q+        
Sbjct: 622 NNPYKSEEVPELVAWRIA---MNFGSQAQNPFLTTLDNVKKVALNTDGLGQSV------- 671

Query: 425 EDMLKGEGFNQKFSDGDLRYGDLGQKL-GAGNMSTSQIVGS 544
             +LKG G N+    G   YGD+GQ+L GA +M+T    GS
Sbjct: 672 --LLKGYG-NEGHDSGHPDYGDIGQRLGGADDMNTMMEEGS 709


>tr|B3DU84|B3DU84_BIFLD Subtilisin-like serine protease
           OS=Bifidobacterium longum (strain DJO10A) GN=aprE PE=4
           SV=1
          Length = 1937

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +2

Query: 245 NNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKGRSKGRA 424
           NN     E+ E  +W++A   + F  Q +  F  +  + K VA +   + Q+        
Sbjct: 593 NNPYKSEEVPELVAWRIA---MNFGSQAQNPFLTTLDNVKKVALNTDGLGQSV------- 642

Query: 425 EDMLKGEGFNQKFSDGDLRYGDLGQKL-GAGNMSTSQIVGS 544
             +LKG G N+    G   YGD+GQ+L GA +M+T    GS
Sbjct: 643 --LLKGYG-NEGHDSGHPDYGDIGQRLGGADDMNTMMEEGS 680


>tr|Q3T552|Q3T552_BIFLO Endo-alpha-N-acetylgalactosaminidase
           OS=Bifidobacterium longum subsp. longum JCM 1217
           GN=engBF PE=4 SV=1
          Length = 1966

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +2

Query: 245 NNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKGRSKGRA 424
           NN     E+ E  +W++A   + F  Q +  F  +  + K VA +   + Q+        
Sbjct: 622 NNPYKSEEVPELVAWRIA---MNFGSQAQNPFLTTLDNVKKVALNTDGLGQSV------- 671

Query: 425 EDMLKGEGFNQKFSDGDLRYGDLGQKL-GAGNMSTSQIVGS 544
             +LKG G N+    G   YGD+GQ+L GA +M+T    GS
Sbjct: 672 --LLKGYG-NEGHDSGHPDYGDIGQRLGGADDMNTMMEEGS 709


>tr|B2C4I9|B2C4I9_BIFLO EngBF (Fragment) OS=Bifidobacterium longum
           PE=4 SV=1
          Length = 291

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +2

Query: 245 NNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKGRSKGRA 424
           NN     E+ E  +W++A   + F  Q +  F  +  + K VA +   + Q+        
Sbjct: 8   NNPYKSEEVPELVAWRIA---MNFGSQAQNPFLTTLDNVKKVALNTDGLGQSV------- 57

Query: 425 EDMLKGEGFNQKFSDGDLRYGDLGQKL-GAGNMSTSQIVGS 544
             +LKG G N+    G   YGD+GQ+L GA +M+T    GS
Sbjct: 58  --LLKGYG-NEGHDSGHPDYGDIGQRLGGADDMNTMMEEGS 95


>tr|B2C4I3|B2C4I3_BIFLO EngBF (Fragment) OS=Bifidobacterium longum
           PE=4 SV=1
          Length = 289

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +2

Query: 245 NNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKGRSKGRA 424
           NN     E+ E  +W++A   + F  Q +  F  +  + K VA +   + Q+        
Sbjct: 6   NNPYKSEEVPELVAWRIA---MNFGSQAQNPFLTTLDNVKKVALNTDGLGQSV------- 55

Query: 425 EDMLKGEGFNQKFSDGDLRYGDLGQKL-GAGNMSTSQIVGS 544
             +LKG G N+    G   YGD+GQ+L GA +M+T    GS
Sbjct: 56  --LLKGYG-NEGHDSGHPDYGDIGQRLGGADDMNTMMEEGS 93


>tr|B2C4I2|B2C4I2_BIFLO EngBF (Fragment) OS=Bifidobacterium longum
           PE=4 SV=1
          Length = 288

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +2

Query: 245 NNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKGRSKGRA 424
           NN     E+ E  +W++A   + F  Q +  F  +  + K VA +   + Q+        
Sbjct: 5   NNPYKSEEVPELVAWRIA---MNFGSQAQNPFLTTLDNVKKVALNTDGLGQSV------- 54

Query: 425 EDMLKGEGFNQKFSDGDLRYGDLGQKL-GAGNMSTSQIVGS 544
             +LKG G N+    G   YGD+GQ+L GA +M+T    GS
Sbjct: 55  --LLKGYG-NEGHDSGHPDYGDIGQRLGGADDMNTMMEEGS 92