DK961141 |
Clone id |
TST39A01NGRL0009_E24 |
Library |
TST39 |
Length |
671 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_E24. 5' end sequence. |
Accession |
DK961141 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1592Contig1 |
Sequence |
CTCTCTCTCACACACACACACACACACACACACACACACACACACACACACACACACACA CACACACACACTCATCGCAAGGTTCGTTGGCTATGGCTTGAGAAGCGATCGCCCCTCTGC ATGCATCTAGGTGCCCTCCTCTCTCTGTGGATTCCCTGCTTCGCATCCCTTTTGCCTATC GAAGAAGGAATTCTTACTTGCAGTTGCTAAGTACCGCCCATTCCTGTGCTTTGTACTTCT GGGTTCTTCCCCGGACCCTTCATCCTTTGTGTATTTAGCTGCCCTTTGGCACTCGGAGTC CATTTACATGTTCATATTGGGTGGAGAGGGTCAGCTTGGCCCCCTCGCGGCCGCCACCTT GGCTGGAGCGGTGTCACTTCGGGCAATGTGCTGGAGGAAGCTCTACTGCCTACCCTTTGT TGTCTTCAAAACTCTGAAAATGCATCACCTCACCAGGTAGAGACTCAGCGTGCGGTGCAG AAACAGATTGGAAATCCCGCTCAGAGAAGCAATTAGGTTGATAAAGTCTTAAGTCTGGAA GATCTCTCATGTCAAGCGGAGTAACACACTTCAGCTCAGAAGATCTTGAGCATCTCTCCA ATAGCTTTCAGACGATGGGCCGTGAGTACAAGCTTTCCAATGGATCAAATAATAATGGAT TTATGCACAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P0AB38 |
Definition |
sp|P0AB38|YCFM_ECOLI Uncharacterized protein ycfM OS=Escherichia coli (strain K12) |
Align length |
95 |
Score (bit) |
32.7 |
E-value |
1.8 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9DER0 |
Definition |
tr|A9DER0|A9DER0_9RHIZ Acyl-CoA dehydrogenase family protein OS=Hoeflea phototrophica DFL-43 |
Align length |
79 |
Score (bit) |
38.9 |
E-value |
0.3 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961141|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0009_E24, 5' (671 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9DER0|A9DER0_9RHIZ Acyl-CoA dehydrogenase family protein OS=... 39 0.30 tr|Q21V94|Q21V94_RHOFD Acyl-CoA dehydrogenase-like OS=Rhodoferax... 39 0.39 tr|B0SZK1|B0SZK1_CAUSK Acyl-CoA dehydrogenase domain protein OS=... 38 0.50 tr|Q1DJS6|Q1DJS6_COCIM Putative uncharacterized protein OS=Cocci... 37 1.1 tr|B1TF72|B1TF72_9BURK Acyl-CoA dehydrogenase domain protein OS=... 36 2.5 tr|Q654H4|Q654H4_ORYSJ Putative uncharacterized protein P0412C04... 36 2.5 tr|Q8FIN4|Q8FIN4_ECOL6 Putative uncharacterized protein ycfM OS=... 35 3.3 tr|Q63XX0|Q63XX0_BURPS Putative uncharacterized protein OS=Burkh... 35 3.3 tr|Q3JWK4|Q3JWK4_BURP1 Acyl-CoA dehydrogenase, C-terminal domain... 35 3.3 tr|Q1LQ45|Q1LQ45_RALME Acyl-CoA dehydrogenase-like protein OS=Ra... 35 3.3 tr|A1TV65|A1TV65_ACIAC Acyl-CoA dehydrogenase domain protein OS=... 35 3.3 tr|B7CJT0|B7CJT0_BURPS Acyl-CoA dehydrogenase domain protein OS=... 35 3.3 tr|B1HGC1|B1HGC1_BURPS Acyl-CoA dehydrogenase domain protein OS=... 35 3.3 tr|A8KJE7|A8KJE7_BURPS Acyl-CoA dehydrogenase domain protein OS=... 35 3.3 tr|A4LJT2|A4LJT2_BURPS Acyl-CoA dehydrogenase domain protein OS=... 35 3.3 tr|A4XEQ6|A4XEQ6_NOVAD Acyl-CoA dehydrogenase domain protein OS=... 35 4.3 tr|A9GGF3|A9GGF3_9RHOB Acyl-CoA dehydrogenase family protein OS=... 35 4.3 tr|Q1BT90|Q1BT90_BURCA Acyl-CoA dehydrogenase-like OS=Burkholder... 35 5.6 tr|B4E9R7|B4E9R7_BURCJ Putative acyl-CoA dehydrogenase OS=Burkho... 35 5.6 tr|B1JZ82|B1JZ82_BURCC Acyl-CoA dehydrogenase domain protein OS=... 35 5.6 tr|A0KAV1|A0KAV1_BURCH Acyl-CoA dehydrogenase domain protein OS=... 35 5.6 tr|B5WCA3|B5WCA3_9BURK Acyl-CoA dehydrogenase domain protein OS=... 35 5.6 tr|A9ESA6|A9ESA6_9RHOB Acyl-CoA dehydrogenase family protein OS=... 35 5.6 tr|A2VV44|A2VV44_9BURK Acyl-CoA dehydrogenase OS=Burkholderia ce... 35 5.6 tr|B7Q8K9|B7Q8K9_IXOSC Rapsynoid, putative OS=Ixodes scapularis ... 35 5.6 tr|Q3JB65|Q3JB65_NITOC Putative uncharacterized protein OS=Nitro... 34 7.3 tr|Q39CK2|Q39CK2_BURS3 Acyl-CoA dehydrogenase OS=Burkholderia sp... 34 7.3 tr|B6C1V6|B6C1V6_9GAMM Putative uncharacterized protein OS=Nitro... 34 7.3 tr|B2H1S5|B2H1S5_BURPS Acyl-CoA dehydrogenase domain protein OS=... 34 7.3 tr|Q9L1P6|Q9L1P6_STRCO Putative uncharacterized protein SCO6869 ... 34 9.5
>tr|A9DER0|A9DER0_9RHIZ Acyl-CoA dehydrogenase family protein OS=Hoeflea phototrophica DFL-43 GN=HPDFL43_10611 PE=4 SV=1 Length = 398
Score = 38.9 bits (89), Expect = 0.30 Identities = 24/79 (30%), Positives = 36/79 (45%) Frame = +1
Query: 319 GWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSENASPHQVETQRAVQKQIGNP 498 GW G WP + GW V S N+ EE + N+ P + V G+ Sbjct: 54 GWLGVTWPEKYGGTGWDAV-SRNIFEEEITAA-----NAPRIIPFGLNMLGPVLMAFGSE 107
Query: 499 AQRSN*VDKVLSLEDLSCQ 555 AQ+++ + ++LS ED CQ Sbjct: 108 AQKAHYLPRILSGEDWWCQ 126
>tr|Q21V94|Q21V94_RHOFD Acyl-CoA dehydrogenase-like OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=Rfer_2593 PE=4 SV=1 Length = 402
Score = 38.5 bits (88), Expect = 0.39 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 1/99 (1%) Frame = +1
Query: 319 GWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSENASPHQVETQRAVQKQIGNP 498 GW + WP GWS V E+ + CCL ++ P V V + GN Sbjct: 54 GWLANHWPVAYGGPGWSAV------EKFIFEHECCLASAPRIVPFGVNMLGPVLIKFGNE 107
Query: 499 AQRSN*VDKVLSLEDLSCQAE*HTSA-QKILSISPIAFR 612 Q+ + + ++L D CQ T A + ++S A R Sbjct: 108 TQKRHWLPRILDGSDWWCQGYSETGAGSDLAAVSTTALR 146
>tr|B0SZK1|B0SZK1_CAUSK Acyl-CoA dehydrogenase domain protein OS=Caulobacter sp. (strain K31) GN=Caul_1361 PE=4 SV=1 Length = 400
Score = 38.1 bits (87), Expect = 0.50 Identities = 27/98 (27%), Positives = 41/98 (41%) Frame = +1
Query: 262 ILCVFSCPLALGVHLHVHIGWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSEN 441 + C + LA LH+ GW +WP GWS + L E C + N Sbjct: 38 VFCDKAHSLAWQRILHIR-GWAAPSWPVEYGGPGWSEIQRQVFLAE------CARAGAPN 90
Query: 442 ASPHQVETQRAVQKQIGNPAQRSN*VDKVLSLEDLSCQ 555 +P + V + G P Q++ + ++LS ED CQ Sbjct: 91 LAPMGLRMVAPVIMRFGAPEQKARYLPRILSGEDYWCQ 128
>tr|Q1DJS6|Q1DJS6_COCIM Putative uncharacterized protein OS=Coccidioides immitis GN=CIMG_09437 PE=4 SV=1 Length = 554
Score = 37.0 bits (84), Expect = 1.1 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 1/140 (0%) Frame = +1
Query: 130 GALLSLWIPCFASLLPIEEGILTCSC*VPPIPVLCTSGFFPGPFILCVFSCPLALGVHLH 309 G L+ LW P + GI + S F GP + P+ G +H Sbjct: 224 GVLVDLWDP-------VSRGIAGATF---------ASSTFIGPI-----AGPIVGGFIVH 262
Query: 310 VHIGWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSENASPHQVETQRA-VQKQ 486 H+GWR +AW ++ +A++ +C L E P ++ + A ++K+ Sbjct: 263 SHLGWRWTAWI--------------TLILKAVIGCICVLTIPETFGPLLLQRRAARLRKE 308
Query: 487 IGNPAQRSN*VDKVLSLEDL 546 GNPA R+ D +++D+ Sbjct: 309 TGNPALRTALDDARPTMQDI 328
>tr|B1TF72|B1TF72_9BURK Acyl-CoA dehydrogenase domain protein OS=Burkholderia ambifaria MEX-5 GN=BamMEX5DRAFT_6438 PE=4 SV=1 Length = 398
Score = 35.8 bits (81), Expect = 2.5 Identities = 24/79 (30%), Positives = 32/79 (40%) Frame = +1
Query: 319 GWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSENASPHQVETQRAVQKQIGNP 498 GW S WP GWS V ++ L C L + P V V + GN Sbjct: 54 GWLASHWPREYGGPGWS------VAQKFLFDNECALAGAPRIVPFGVNMLGPVLIKYGNE 107
Query: 499 AQRSN*VDKVLSLEDLSCQ 555 AQR + + ++L D CQ Sbjct: 108 AQRRHWLPRILDGTDWWCQ 126
>tr|Q654H4|Q654H4_ORYSJ Putative uncharacterized protein P0412C04.5 OS=Oryza sativa subsp. japonica GN=P0412C04.5 PE=4 SV=1 Length = 459
Score = 35.8 bits (81), Expect = 2.5 Identities = 14/37 (37%), Positives = 24/37 (64%) Frame = +2
Query: 101 RSDRPSACI*VPSSLCGFPASHPFCLSKKEFLLAVAK 211 R+D+PSAC +P+ + F +SHPF + +F+ + K Sbjct: 155 RADKPSACTSMPAKIVDFRSSHPFPIQSIQFIQFIQK 191
>tr|Q8FIN4|Q8FIN4_ECOL6 Putative uncharacterized protein ycfM OS=Escherichia coli O6 GN=ycfM PE=4 SV=1 Length = 214
Score = 35.4 bits (80), Expect = 3.3 Identities = 27/95 (28%), Positives = 41/95 (43%) Frame = +1
Query: 211 VPPIPVLCTSGFFPGPFILCVFSCPLALGVHLHVHIGWRGSAWPPRGRHLGWSGVTSGNV 390 VP +P + T PGP + PLA + H W G+ P + LG GVT+G+V Sbjct: 47 VPTVPSVPTIPQQPGPIEHEDQTAPLAPHIR---HYDWNGAMQPMVSKMLGADGVTAGSV 103
Query: 391 LEEALLPTLCCLQNSENASPHQVETQRAVQKQIGN 495 L + + N N S + E ++ + N Sbjct: 104 L------LVDSVNNRTNGSLNAAEATETLRNALAN 132
>tr|Q63XX0|Q63XX0_BURPS Putative uncharacterized protein OS=Burkholderia pseudomallei GN=BPSL0420 PE=4 SV=1 Length = 402
Score = 35.4 bits (80), Expect = 3.3 Identities = 22/79 (27%), Positives = 33/79 (41%) Frame = +1
Query: 319 GWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSENASPHQVETQRAVQKQIGNP 498 GW S WP GWS V ++ L C + + P V V + G+P Sbjct: 54 GWLASHWPREWGGPGWS------VAQKFLFDNECAIAGAPRIVPFGVNMLGPVLIKYGSP 107
Query: 499 AQRSN*VDKVLSLEDLSCQ 555 AQ+ + + ++L D CQ Sbjct: 108 AQKRHWLPRILDGTDWWCQ 126
>tr|Q3JWK4|Q3JWK4_BURP1 Acyl-CoA dehydrogenase, C-terminal domain protein OS=Burkholderia pseudomallei (strain 1710b) GN=BURPS1710b_0635 PE=4 SV=1 Length = 402
Score = 35.4 bits (80), Expect = 3.3 Identities = 22/79 (27%), Positives = 33/79 (41%) Frame = +1
Query: 319 GWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSENASPHQVETQRAVQKQIGNP 498 GW S WP GWS V ++ L C + + P V V + G+P Sbjct: 54 GWLASHWPREWGGPGWS------VAQKFLFDNECAIAGAPRIVPFGVNMLGPVLIKYGSP 107
Query: 499 AQRSN*VDKVLSLEDLSCQ 555 AQ+ + + ++L D CQ Sbjct: 108 AQKRHWLPRILDGTDWWCQ 126
>tr|Q1LQ45|Q1LQ45_RALME Acyl-CoA dehydrogenase-like protein OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=Rmet_0845 PE=4 SV=1 Length = 398
Score = 35.4 bits (80), Expect = 3.3 Identities = 22/79 (27%), Positives = 31/79 (39%) Frame = +1
Query: 319 GWRGSAWPPRGRHLGWSGVTSGNVLEEALLPTLCCLQNSENASPHQVETQRAVQKQIGNP 498 GW WP GWS + E + T C L + P V V + G Sbjct: 56 GWLVPLWPREWGGTGWSSI------ERFIFETECALAGAPLVHPMGVRLVGPVILRYGTE 109
Query: 499 AQRSN*VDKVLSLEDLSCQ 555 AQ+ + ++LS +D CQ Sbjct: 110 AQKQTYLSRILSGQDYWCQ 128
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