DK961174 |
Clone id |
TST39A01NGRL0009_G09 |
Library |
TST39 |
Length |
589 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_G09. 5' end sequence. |
Accession |
DK961174 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL98Contig1 |
Sequence |
TTGCGCCAGTGCAGTGGAGAGCAGATCTGTGTGCTCAAGCAGCTCATGGCGGAGCAGACG GAACGCGCTTTCTCTTAAGCAGCCGAAGGTCTTTCTCTGCGGTTAAACTTCTGGAAAAGG AAGGGCTCCTGGCAAGCGAGGAAATCGATTCTATAAGAACATTGGTTTGGGGTTTAAGAC TGGCCGTCATTCTACTACATCGACATACATTGACAAGAAGTGCCCTTTTACGGGCAACGT TTCTATCCGAGGGCGCATTTTGACTGGGACTGTTAACTGCGCAAAAATGACGAGGACAAT AACTGTCAGGAGGGACTACTTGCATTTCGTGAAGAAATATCAAAGGTATGAGAAGAGGCA TTCGAATTTGTCTGCCCACGTGTCTCCTTGCTTCCGTGTGAAAGAGGGGGACAAGGTTAT TATCGGGCAGTGCCGGCCTCTTTCAAAGACTGTAAGATTCAACGTCTTGAAGGTCTTTCC TATGGGAGCCGCAGAGGGTGGCAAGAAGGCATTCACTGCAATGTAGTGTACCGTAGTTTT CCATCGAACCTAATTTTTGTTCTAAATTTCATGGGTACCTTGGACTCTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O65569 |
Definition |
sp|O65569|RS112_ARATH 40S ribosomal protein S11-2 OS=Arabidopsis thaliana |
Align length |
150 |
Score (bit) |
239.0 |
E-value |
1.0e-62 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S6F7 |
Definition |
tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
151 |
Score (bit) |
250.0 |
E-value |
5.0e-65 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961174|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0009_G09, 5' (589 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella paten... 250 5e-65 tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella paten... 250 5e-65 tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medic... 246 9e-64 tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 245 1e-63 tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium ... 245 2e-63 tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medic... 244 3e-63 tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza... 242 1e-62 tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea... 241 2e-62 tr|B3TLZ7|B3TLZ7_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 239 6e-62 tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 238 1e-61 tr|A7P608|A7P608_VITVI Chromosome chr4 scaffold_6, whole genome ... 237 4e-61 tr|Q7XIK5|Q7XIK5_ORYSJ Os07g0565000 protein OS=Oryza sativa subs... 236 7e-61 tr|B8AU50|B8AU50_ORYSI Putative uncharacterized protein OS=Oryza... 236 7e-61 tr|Q0JBY8|Q0JBY8_ORYSJ Os04g0502300 protein OS=Oryza sativa subs... 235 2e-60 tr|Q01I56|Q01I56_ORYSA OSIGBa0112M24.1 protein OS=Oryza sativa G... 235 2e-60 tr|A9PC56|A9PC56_POPTR Putative uncharacterized protein OS=Popul... 233 5e-60 tr|A9P8K6|A9P8K6_POPTR Putative uncharacterized protein OS=Popul... 233 6e-60 tr|B6SIL5|B6SIL5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 233 8e-60 tr|Q8H4T5|Q8H4T5_ORYSJ Os07g0565100 protein OS=Oryza sativa subs... 228 1e-58 tr|B6TDP8|B6TDP8_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 228 1e-58 tr|A7QS26|A7QS26_VITVI Chromosome undetermined scaffold_155, who... 228 1e-58 tr|A2XXG3|A2XXG3_ORYSI Putative uncharacterized protein OS=Oryza... 228 1e-58 tr|A3AVB8|A3AVB8_ORYSJ Putative uncharacterized protein OS=Oryza... 228 2e-58 tr|A2XV92|A2XV92_ORYSI Putative uncharacterized protein OS=Oryza... 228 2e-58 tr|Q7XLC9|Q7XLC9_ORYSJ Os04g0613600 protein OS=Oryza sativa subs... 223 8e-57 tr|A3BQN0|A3BQN0_ORYSJ Putative uncharacterized protein OS=Oryza... 211 3e-53 tr|A4RYN3|A4RYN3_OSTLU Ribosomal protein S11, component of cytos... 209 1e-52 tr|Q209Q5|Q209Q5_9CHLO 40S ribosomal protein S11 OS=Chlamydomona... 203 5e-51 tr|A8JHC3|A8JHC3_CHLRE Ribosomal protein S11 OS=Chlamydomonas re... 203 7e-51 tr|Q7SFZ2|Q7SFZ2_NEUCR Putative uncharacterized protein OS=Neuro... 191 3e-47
>tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163092 PE=3 SV=1 Length = 160
Score = 250 bits (638), Expect = 5e-65 Identities = 122/151 (80%), Positives = 133/151 (88%), Gaps = 1/151 (0%) Frame = +2
Query: 74 LKQPKVFLCG*TSGKGRAPGKRGNRFYKNIGLGFKTGRHSTTSTYIDKKCPFTGNVSIRG 253 LKQPKVFL S KG+A GK G RF+KN+GLGFKT R + TYIDKKCPFTG+VSIRG Sbjct: 10 LKQPKVFLSTKASSKGKAAGKAGTRFWKNVGLGFKTPREAIEGTYIDKKCPFTGDVSIRG 69
Query: 254 RILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQC 433 RILTGTVNC KMTRTIT+RRDYLHFV+KYQRYEKRHSNL+AHVSP FRVKEGDKVIIGQC Sbjct: 70 RILTGTVNCTKMTRTITIRRDYLHFVRKYQRYEKRHSNLAAHVSPAFRVKEGDKVIIGQC 129
Query: 434 RPLSKTVRFNVLKVFPMGAAEGG-KKAFTAM 523 RPLSKTVRFNVLKV PMGA++GG KK FTA+ Sbjct: 130 RPLSKTVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161124 PE=3 SV=1 Length = 160
Score = 250 bits (638), Expect = 5e-65 Identities = 122/151 (80%), Positives = 133/151 (88%), Gaps = 1/151 (0%) Frame = +2
Query: 74 LKQPKVFLCG*TSGKGRAPGKRGNRFYKNIGLGFKTGRHSTTSTYIDKKCPFTGNVSIRG 253 LKQPKVFL S KG+A GK G RF+KN+GLGFKT R + TYIDKKCPFTG+VSIRG Sbjct: 10 LKQPKVFLSTKASAKGKAAGKAGTRFWKNVGLGFKTPREAIEGTYIDKKCPFTGDVSIRG 69
Query: 254 RILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQC 433 RILTGTVNC KMTRTIT+RRDYLHFV+KYQRYEKRHSNL+AHVSP FRVKEGDKVIIGQC Sbjct: 70 RILTGTVNCTKMTRTITIRRDYLHFVRKYQRYEKRHSNLAAHVSPAFRVKEGDKVIIGQC 129
Query: 434 RPLSKTVRFNVLKVFPMGAAEGG-KKAFTAM 523 RPLSKTVRFNVLKV PMGA++GG KK FTA+ Sbjct: 130 RPLSKTVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 160
Score = 246 bits (627), Expect = 9e-64 Identities = 119/151 (78%), Positives = 130/151 (86%), Gaps = 1/151 (0%) Frame = +2
Query: 74 LKQPKVFLCG*TSGKGRAPGKRGNRFYKNIGLGFKTGRHSTTSTYIDKKCPFTGNVSIRG 253 LKQPKVFLC SGKG+ PGK GNRF+K++GLGFKT R +T TYIDKKCPFTGNVSIRG Sbjct: 10 LKQPKVFLCSKKSGKGKRPGKGGNRFWKSVGLGFKTPREATEGTYIDKKCPFTGNVSIRG 69
Query: 254 RILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQC 433 RIL GT + AKM RTI VRR+YLHF+KKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQC Sbjct: 70 RILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQC 129
Query: 434 RPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 523 RPLSKTVRFNVLKV P G++ G GKKAFT M Sbjct: 130 RPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM 160
>tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 159
Score = 245 bits (626), Expect = 1e-63 Identities = 117/150 (78%), Positives = 129/150 (86%) Frame = +2
Query: 74 LKQPKVFLCG*TSGKGRAPGKRGNRFYKNIGLGFKTGRHSTTSTYIDKKCPFTGNVSIRG 253 LKQPKVFLC SGKG+ PGK GNRF+KNIGLGFKT R + TYIDKKCPFTGNVSIRG Sbjct: 10 LKQPKVFLCSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRG 69
Query: 254 RILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQC 433 RIL GT + AKM RTI VRR+YLH+V+KYQRYEKRHSN++AH+SPCFRVKEGD VIIGQC Sbjct: 70 RILAGTCHSAKMNRTIIVRRNYLHYVRKYQRYEKRHSNIAAHISPCFRVKEGDHVIIGQC 129
Query: 434 RPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 523 RPLSKTVRFNVLKV P G+ GGKKAF A+ Sbjct: 130 RPLSKTVRFNVLKVIPAGSKGGGKKAFAAV 159
>tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium rubrum GN=rpS11 PE=2 SV=1 Length = 159
Score = 245 bits (625), Expect = 2e-63 Identities = 118/150 (78%), Positives = 128/150 (85%) Frame = +2
Query: 74 LKQPKVFLCG*TSGKGRAPGKRGNRFYKNIGLGFKTGRHSTTSTYIDKKCPFTGNVSIRG 253 LKQPKVFL SGKG+ PGK GNRF+KNIGLGFKT R + TYIDKKCPFTGNVSIRG Sbjct: 10 LKQPKVFLSSNKSGKGKRPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCPFTGNVSIRG 69
Query: 254 RILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQC 433 RIL GT + AKM RTI VRR+YLH++KKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQC Sbjct: 70 RILAGTCHSAKMQRTIIVRRNYLHYIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQC 129
Query: 434 RPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 523 RP+SKTVRFNVLKV P GAA GGKKAFT + Sbjct: 130 RPISKTVRFNVLKVIPAGAASGGKKAFTGL 159
>tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 160
Score = 244 bits (623), Expect = 3e-63 Identities = 118/151 (78%), Positives = 129/151 (85%), Gaps = 1/151 (0%) Frame = +2
Query: 74 LKQPKVFLCG*TSGKGRAPGKRGNRFYKNIGLGFKTGRHSTTSTYIDKKCPFTGNVSIRG 253 LKQPKVFLC SGKG+ PGK GNRF+K++GLGFKT R + TYIDKKCPFTGNVSIRG Sbjct: 10 LKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRG 69
Query: 254 RILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQC 433 RIL GT + AKM RTI VRR+YLHF+KKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQC Sbjct: 70 RILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQC 129
Query: 434 RPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 523 RPLSKTVRFNVLKV P G++ G GKKAFT M Sbjct: 130 RPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM 160
>tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28229 PE=4 SV=1 Length = 159
Score = 242 bits (617), Expect = 1e-62 Identities = 116/149 (77%), Positives = 126/149 (84%) Frame = +2
Query: 74 LKQPKVFLCG*TSGKGRAPGKRGNRFYKNIGLGFKTGRHSTTSTYIDKKCPFTGNVSIRG 253 LKQPKVFLC SGKG+ PGK GNRF+KNIGLGFKT R + TYIDKKCPFTG VSIRG Sbjct: 10 LKQPKVFLCPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRG 69
Query: 254 RILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQC 433 RI+ GT + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD VIIGQC Sbjct: 70 RIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQC 129
Query: 434 RPLSKTVRFNVLKVFPMGAAEGGKKAFTA 520 RPLSKTVRFNV+KV P G+ GGKKAF A Sbjct: 130 RPLSKTVRFNVIKVIPAGSTGGGKKAFIA 158
>tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 160
Score = 241 bits (616), Expect = 2e-62 Identities = 118/151 (78%), Positives = 128/151 (84%), Gaps = 1/151 (0%) Frame = +2
Query: 74 LKQPKVFLCG*TSGKGRAPGKRGNRFYKNIGLGFKTGRHSTTSTYIDKKCPFTGNVSIRG 253 LKQPKVFL SGKG+ PGK GNRF+KN+GLGFKT + + TYIDKKCPFTGNVSIRG Sbjct: 10 LKQPKVFLSSKKSGKGKRPGKGGNRFFKNVGLGFKTPKEAVQGTYIDKKCPFTGNVSIRG 69
Query: 254 RILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQC 433 RIL GT AKMTRTI VRRDYLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD VIIGQC Sbjct: 70 RILAGTCYSAKMTRTIIVRRDYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQC 129
Query: 434 RPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 523 RPLSKTVRFNVLKV P G++ G KKAFTA+ Sbjct: 130 RPLSKTVRFNVLKVIPAGSSSGSAKKAFTAI 160
>tr|B3TLZ7|B3TLZ7_ELAGV 40S ribosomal protein S11 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 163
Score = 239 bits (611), Expect = 6e-62 Identities = 116/151 (76%), Positives = 129/151 (85%), Gaps = 1/151 (0%) Frame = +2
Query: 74 LKQPKVFLCG*TSGKGRAPGKRGNRFYKNIGLGFKTGRHSTTSTYIDKKCPFTGNVSIRG 253 LKQPKVFLC SGKG+ PGK GNRF+K+IGLGFKT R + Y+DKKCPFTGNVSIRG Sbjct: 10 LKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGAYVDKKCPFTGNVSIRG 69
Query: 254 RILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQC 433 RIL GT + AKM RTI VRR+YLH+VKKYQRYEKRHSN++AH+SPCFRVKEGD VIIGQC Sbjct: 70 RILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIAAHISPCFRVKEGDHVIIGQC 129
Query: 434 RPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 523 RPLSKTVRFNVLKV P G+ G GKKAFTA+ Sbjct: 130 RPLSKTVRFNVLKVIPAGSKGGSGKKAFTAI 160
>tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=2 SV=1 Length = 159
Score = 238 bits (608), Expect = 1e-61 Identities = 115/149 (77%), Positives = 126/149 (84%) Frame = +2
Query: 74 LKQPKVFLCG*TSGKGRAPGKRGNRFYKNIGLGFKTGRHSTTSTYIDKKCPFTGNVSIRG 253 LKQPKVFL SGKG+ PGK GNRF+K+IGLGFKT R + TYIDKKCPFTG VSIRG Sbjct: 10 LKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRG 69
Query: 254 RILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQC 433 RI+ GT + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD VIIGQC Sbjct: 70 RIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQC 129
Query: 434 RPLSKTVRFNVLKVFPMGAAEGGKKAFTA 520 RPLSKTVRFNV+KV P G+A GKKAFTA Sbjct: 130 RPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158
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