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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961207
Clone id TST39A01NGRL0009_H20
Library
Length 426
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_H20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CATTTGCTCCAGCTATGGTTTGCAAGCATGTGCCTAGGGTTTCCTTGTTTCCGCGGTGCT
TTTCTTTGGGTTTTGGACAATGCATTTCCATTCCCGCATTTCGTGCTGCGATTAGCGCTA
CCATTATTGAAGGATTGCGTCCACTTTCATCGCCATTTCTCTGACACAGAGCTCTCCTTG
TGCTACATGGATCTTCTTAGGCACAATAGGGCCCGTATGAGAAGATGGGGGTTTTATTGC
GGCAAAGGTTTGGCCGCTCGTTCTTGGACTTCTGACACTTGAGCTTCAATTCCTCTGCAG
AGCTGCTTGGGGAGTACTTTCCCTCATGACGGTAGTGTTGCTTTAACGTTCTTCACATGG
ACTGTGCTCTATCTGCCGAGATGCCCTCATTAGAGTTGTGGTGATCTGTGGGCTCCATGA
GAGCTT
■■Homology search results ■■ -
sp_hit_id Q96RW7
Definition sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens
Align length 48
Score (bit) 33.9
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961207|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_H20, 5'
         (426 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1...    34   0.27 
sp|P79795|NRP1_CHICK Neuropilin-1 OS=Gallus gallus GN=NRP1 PE=2 ...    31   1.8  
sp|Q9Z1P7|KANK3_MOUSE KN motif and ankyrin repeat domain-contain...    31   2.4  
sp|Q9QUH6|SYGP1_RAT Ras GTPase-activating protein SynGAP OS=Ratt...    30   4.0  
sp|Q96PV0|SYGP1_HUMAN Ras GTPase-activating protein SynGAP OS=Ho...    30   4.0  
sp|Q91ZD6|EAF2_MOUSE ELL-associated factor 2 OS=Mus musculus GN=...    30   4.1  
sp|Q05519|SFR11_HUMAN Splicing factor, arginine/serine-rich 11 O...    29   6.8  
sp|Q5RKH0|NP60_RAT Nuclear protein NP60 OS=Rattus norvegicus GN=...    29   6.8  
sp|Q922P9|NP60_MOUSE Nuclear protein NP60 OS=Mus musculus GN=Np6...    29   6.8  
sp|Q7YR40|MDC1_PANTR Mediator of DNA damage checkpoint protein 1...    29   7.0  
sp|Q14676|MDC1_HUMAN Mediator of DNA damage checkpoint protein 1...    29   7.0  
sp|Q9SW33|TL1Y_ARATH Thylakoid lumenal 17.9 kDa protein, chlorop...    29   8.8  
sp|P59480|RM45_XENLA 39S ribosomal protein L45, mitochondrial OS...    29   9.1  
sp|P93766|MLO_HORVU Protein MLO OS=Hordeum vulgare GN=MLO PE=1 SV=1    29   9.1  
sp|Q0DC45|MLOH1_ORYSJ MLO protein homolog 1 OS=Oryza sativa subs...    29   9.1  
sp|A2YD22|MLOH1_ORYSI MLO protein homolog 1 OS=Oryza sativa subs...    29   9.1  
sp|O49873|MLOH1_HORVU MLO protein homolog 1 OS=Hordeum vulgare G...    29   9.1  
sp|Q96AV8|E2F7_HUMAN Transcription factor E2F7 OS=Homo sapiens G...    29   9.1  

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2
          Length = 5635

 Score = 33.9 bits (76), Expect = 0.27
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 325  EGKYSPSSSAEELKLKCQKSKNERPNLCRNKTPIFSYGPYCA*EDPCS 182
            E  Y+        K+    SK +R N C +   + S GP+CA ED C+
Sbjct: 5065 ESDYNQIEETLGFKIHASISKGDRSNQCPSGFTLDSVGPFCADEDECA 5112


>sp|P79795|NRP1_CHICK Neuropilin-1 OS=Gallus gallus GN=NRP1 PE=2
           SV=1
          Length = 914

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 121 PLLKDCVHFHRHFS--DTELSLCYMDLLRHNRARMRRWGFYCGK 246
           P  +  ++F+ HF   D +    Y++++  + A  R WG YCGK
Sbjct: 61  PYQRIMINFNPHFDLEDRDCKYDYVEVIDGDNAEGRLWGKYCGK 104


>sp|Q9Z1P7|KANK3_MOUSE KN motif and ankyrin repeat domain-containing
           protein 3 OS=Mus musculus GN=Kank3 PE=2 SV=1
          Length = 791

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = -1

Query: 423 LSWSPQITTTLMRASRQIEHSPCEER*SNTTVMRESTPQAALQRN*SSSVRSPRTSGQTF 244
           LS +P++  TL+  SR++E +   ER          +P  A+        RSPR SG++ 
Sbjct: 123 LSRNPRVEHTLLETSRRLEQAQARER--------ALSPARAV-------TRSPRGSGRSS 167

Query: 243 AAIKPPSSHTGP 208
            A  P  +  GP
Sbjct: 168 PAPNPALASPGP 179


>sp|Q9QUH6|SYGP1_RAT Ras GTPase-activating protein SynGAP OS=Rattus
           norvegicus GN=Syngap1 PE=1 SV=2
          Length = 1308

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -3

Query: 373 DRAQSM*RTLKQHYRHEGKYSPSSSAEELKLKCQKSKNERP 251
           DRA+ M ++ K+ + HE   SPSS+AE L+L   +    +P
Sbjct: 169 DRARLM-QSFKESHSHESLLSPSSAAEALELNLDEDSIIKP 208


>sp|Q96PV0|SYGP1_HUMAN Ras GTPase-activating protein SynGAP OS=Homo
           sapiens GN=SYNGAP1 PE=1 SV=4
          Length = 1343

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -3

Query: 373 DRAQSM*RTLKQHYRHEGKYSPSSSAEELKLKCQKSKNERP 251
           DRA+ M ++ K+ + HE   SPSS+AE L+L   +    +P
Sbjct: 169 DRARLM-QSFKESHSHESLLSPSSAAEALELNLDEDSIIKP 208


>sp|Q91ZD6|EAF2_MOUSE ELL-associated factor 2 OS=Mus musculus
           GN=Eaf2 PE=1 SV=1
          Length = 262

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
 Frame = -1

Query: 426 KLSWSPQITTTLMRASRQIEHSPCEER*SNTTVM----RESTPQAALQRN*SSSVRSPRT 259
           +L    Q    L R S  ++HSP EE+ S T++M    RE   +A+L    SS   S  +
Sbjct: 123 RLEQQQQQMWNLPRTSNLVQHSPSEEKMSPTSLMDDIERELKAEASLMDQMSSCDSSSDS 182

Query: 258 SGQTFAAIKPPSSHT------GPIVPKK 193
              + ++ +  SS +       P+ P+K
Sbjct: 183 KSSSSSSSEDSSSDSEDDDQFSPLGPRK 210


>sp|Q05519|SFR11_HUMAN Splicing factor, arginine/serine-rich 11
           OS=Homo sapiens GN=SFRS11 PE=1 SV=1
          Length = 484

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 4/108 (3%)
 Frame = -3

Query: 352 RTLKQHYRHEGKYSPSSSAEELKLKCQKSKNERPNLCRNKTPIFSYGPYCA*EDPCSTRR 173
           R  + H R  G+ S S+S    K K  K K       R+KTP  SY            RR
Sbjct: 291 RRRRSHSRERGRRSRSTSKTRDKKKEDKEKK------RSKTPPKSYSTARRSRSASRERR 344

Query: 172 ALCQRNGDESGRNPSIMVALI----AARNAGMEMHCPKPKEKHRGNKE 41
               R+G  S + P      +    + R    E    K KE+ R  +E
Sbjct: 345 RRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERE 392


>sp|Q5RKH0|NP60_RAT Nuclear protein NP60 OS=Rattus norvegicus
           GN=Np60 PE=2 SV=1
          Length = 552

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 125 NGSANRSTKCGNGNALSKTQRKAPRKQGNP 36
           +GSA+R +KC     L + Q ++PRK+G P
Sbjct: 149 SGSADRGSKC-----LKRAQEQSPRKRGRP 173


>sp|Q922P9|NP60_MOUSE Nuclear protein NP60 OS=Mus musculus GN=Np60
           PE=2 SV=1
          Length = 546

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 125 NGSANRSTKCGNGNALSKTQRKAPRKQGNP 36
           +GSA+R +KC     L + Q ++PRK+G P
Sbjct: 149 SGSADRGSKC-----LKRAQEQSPRKRGRP 173


>sp|Q7YR40|MDC1_PANTR Mediator of DNA damage checkpoint protein 1
            OS=Pan troglodytes GN=MDC1 PE=3 SV=1
          Length = 2171

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = -1

Query: 396  TLMRASRQIEHSPCEER*SNTTVMRESTPQAALQRN*SSSVRSPRTSGQTFAAIKPPSSH 217
            TL+  + ++E S   ++     V  E T QA   R   SSV++P T   T   ++P +S 
Sbjct: 1488 TLVPTAPKLEPSTSTDQ----PVTPEPTSQATRGRTNRSSVKTPETVVPTAPELQPSTST 1543

Query: 216  TGPIVPK 196
              P+ P+
Sbjct: 1544 DQPVTPE 1550
tr_hit_id Q0UGA2
Definition tr|Q0UGA2|Q0UGA2_PHANO Putative uncharacterized protein OS=Phaeosphaeria nodorum
Align length 87
Score (bit) 36.6
E-value 0.63
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961207|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_H20, 5'
         (426 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0UGA2|Q0UGA2_PHANO Putative uncharacterized protein OS=Phaeo...    37   0.63 
tr|A7NGH4|A7NGH4_ROSCS Putative uncharacterized protein OS=Rosei...    36   0.82 
tr|A7PWC2|A7PWC2_VITVI Chromosome chr8 scaffold_34, whole genome...    34   3.1  
tr|A5B054|A5B054_VITVI Putative uncharacterized protein OS=Vitis...    34   3.1  
tr|B3MBU1|B3MBU1_DROAN GF12796 OS=Drosophila ananassae GN=GF1279...    34   3.1  
tr|Q96K89|Q96K89_HUMAN cDNA FLJ14438 fis, clone HEMBB1000317, we...    34   4.1  
tr|Q69YJ3|Q69YJ3_HUMAN Putative uncharacterized protein DKFZp762...    34   4.1  
tr|Q7NPR4|Q7NPR4_CHRVO Putative uncharacterized protein OS=Chrom...    33   9.1  
tr|Q2BYM0|Q2BYM0_9GAMM DNA mismatch repair protein OS=Photobacte...    33   9.4  

>tr|Q0UGA2|Q0UGA2_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_09212 PE=4 SV=2
          Length = 641

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = -3

Query: 307 SSSAEELKLKCQKSKNERPNLCRNKTPIFSYGPYCA*EDPC--STRRALCQRNGDESGRN 134
           S++ E   LKC+ +  ER +       +    P+   EDP   + R    Q+ GDE+   
Sbjct: 294 SATMEIAALKCRIAVLERSS----SDSMQDKPPFQIFEDPSKDAIRATAGQQRGDEASFA 349

Query: 133 PSIMVALIAARNAGMEMHCPKPKEKHR 53
           PS+ +A     ++G E H PKP+ +HR
Sbjct: 350 PSVSMA-----SSGKENHSPKPRRQHR 371


>tr|A7NGH4|A7NGH4_ROSCS Putative uncharacterized protein
           OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8)
           GN=Rcas_0430 PE=4 SV=1
          Length = 215

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
 Frame = +2

Query: 134 IASTFIAISLTQSSPCATWIF-----LGTIGPV*EDGGFIAAKVWPLVLGLLTLELQF 292
           +A+TF  ++L Q++P   W+F     LGT+G +      +A  +WPLVL  + + L F
Sbjct: 149 LAATFAILALLQTTPGMRWMFVPAAVLGTMGLLLMTSAHLAGFLWPLVLISIGIALLF 206


>tr|A7PWC2|A7PWC2_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025556001
           PE=4 SV=1
          Length = 311

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 17/146 (11%)
 Frame = -3

Query: 421 LMEPTDHHNSNEGISADRAQSM*RTLKQHYRHEGKYSPSSSAEELKLKCQK-------SK 263
           L + T++H+  +GI+ +R   +  + K  + H+       + + L +KC K       S 
Sbjct: 2   LSDSTEYHDEEDGIAMERQNFL--SSKCTFNHDSLSIAGWTEQNLCMKCTKDGQLLVCSS 59

Query: 262 NERPNL----CRNKTPIFS-----YGPYCA*EDPCSTRRALCQRNGDESGRNPSIMVALI 110
           +  P +    C    P F      Y P+CA        RA+ +    ES +  S+    +
Sbjct: 60  SGCPLVVHENCLGCPPSFDNMGNFYCPFCA------YSRAVSEYL--ESKKKVSLAKKEL 111

Query: 109 AAR-NAGMEMHCPKPKEKHRGNKETL 35
           A+  NAGM+    KPK+KHR   E L
Sbjct: 112 ASFINAGMKHEPVKPKKKHRKKNEKL 137


>tr|A5B054|A5B054_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_016915 PE=4 SV=1
          Length = 774

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 17/146 (11%)
 Frame = -3

Query: 421 LMEPTDHHNSNEGISADRAQSM*RTLKQHYRHEGKYSPSSSAEELKLKCQK-------SK 263
           L + T++H+  +GI+ +R   +  + K  + H+       + + L +KC K       S 
Sbjct: 465 LSDSTEYHDEEDGIAMERQNFL--SSKCTFNHDSLSIAGWTEQNLCMKCTKDGQLLVCSS 522

Query: 262 NERPNL----CRNKTPIFS-----YGPYCA*EDPCSTRRALCQRNGDESGRNPSIMVALI 110
           +  P +    C    P F      Y P+CA        RA+ +    ES +  S+    +
Sbjct: 523 SGCPLVVHENCLGCPPSFDNMGNFYCPFCA------YSRAVSEYL--ESKKKVSLAKKEL 574

Query: 109 AAR-NAGMEMHCPKPKEKHRGNKETL 35
           A+  NAGM+    KPK+KHR   E L
Sbjct: 575 ASFINAGMKHEPVKPKKKHRKKNEKL 600


>tr|B3MBU1|B3MBU1_DROAN GF12796 OS=Drosophila ananassae GN=GF12796
            PE=4 SV=1
          Length = 1521

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 24/90 (26%), Positives = 33/90 (36%)
 Frame = -3

Query: 337  HYRHEGKYSPSSSAEELKLKCQKSKNERPNLCRNKTPIFSYGPYCA*EDPCSTRRALCQR 158
            HY   G   P      +  +C +S     N    + P+ SY   C      S R   CQR
Sbjct: 922  HYDERGGQCPRKRGRSMD-RCSRSVPACSNETMMEKPVQSYRYSCPENGRNSRRSPPCQR 980

Query: 157  NGDESGRNPSIMVALIAARNAGMEMHCPKP 68
             G+  G+  +  +A       GM    PKP
Sbjct: 981  RGERVGKRCAAAMANRCCPLCGMNAMMPKP 1010


>tr|Q96K89|Q96K89_HUMAN cDNA FLJ14438 fis, clone HEMBB1000317,
           weakly similar to FIBULIN-1, ISOFORM D OS=Homo sapiens
           PE=2 SV=1
          Length = 741

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 325 EGKYSPSSSAEELKLKCQKSKNERPNLCRNKTPIFSYGPYCA*EDPCS 182
           E  Y+        K+    SK +R N C +   + S GP+CA ED C+
Sbjct: 288 ESDYNQIEETLGFKIHASISKGDRSNQCPSGFTLDSVGPFCADEDECA 335


>tr|Q69YJ3|Q69YJ3_HUMAN Putative uncharacterized protein
           DKFZp762L185 (Fragment) OS=Homo sapiens GN=DKFZp762L185
           PE=2 SV=1
          Length = 1244

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 325 EGKYSPSSSAEELKLKCQKSKNERPNLCRNKTPIFSYGPYCA*EDPCS 182
           E  Y+        K+    SK +R N C +   + S GP+CA ED C+
Sbjct: 791 ESDYNQIEETLGFKIHASISKGDRSNQCPSGFTLDSVGPFCADEDECA 838


>tr|Q7NPR4|Q7NPR4_CHRVO Putative uncharacterized protein
           OS=Chromobacterium violaceum GN=CV_3247 PE=4 SV=1
          Length = 220

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = -3

Query: 193 DPCSTRRALCQRNGDESGRNPSIMVALIAARNAGMEMHCPKPKEKHRGNK 44
           DP  +RR L +R GD SGR P+   A+   R AG+    P  +  HRG +
Sbjct: 79  DPVLSRR-LRRRAGDRSGRRPAGHPAVRPDRLAGLHPAAPVRRAGHRGRR 127


>tr|Q2BYM0|Q2BYM0_9GAMM DNA mismatch repair protein
           OS=Photobacterium sp. SKA34 GN=SKA34_16193 PE=4 SV=1
          Length = 722

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -1

Query: 375 QIEHSPCEER*SNTTVMRESTPQAALQRN*SSSVRSPRTSGQTFAAIK 232
           Q +HSPCE + S+ TV    T   +     S + RSP+  G T A IK
Sbjct: 444 QYDHSPCERQDSDQTVNTTRTSDVS-----SGASRSPKPEGPTAAEIK 486