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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961217
Clone id TST39A01NGRL0009_I06
Library
Length 663
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_I06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TAATATGTCGGACGTCTCCGGCCTGCACATCACCAGCGATGGCCGCGCCACTCATCCGGC
CGCCCCCTCTCCGCCAAAGCTGAGGCTCATGAAGGTTGGCTACTACGCTGCCCTGCTGGG
CATCGCCGCCTTCAGCTGCATGTGGGTTCTTTGGTGGCTCCTCTCCAGCGAGCCCGCCGA
CTCGCCGGACGGCCACTACCTGGACCGCCTCGACAAGCACATCCCCTCCCGCTTTTTCCG
CACAGATGGCTACTACGGCTCCGTCCTCATCTACCAAAGCGCTCCATTCATCATCGTGGC
CCTCCTCAGCCTCGTCGTCGTCGAGCTCAGGAAGAAGTTGAATTCCTCATCAAGCCATGA
AACTGAAAAGGGAATAAGCAAAAGCTCTCCAAGTCTCACGACTTACCCGCTCGTGATCAA
GAGTTTCATGGGAGTGCTCACAAGTGCAGACGTTCTCTTCATTCTAGGGATCCTCTTCCT
TGTCGCCTACACTTTTGGGAGACAATGCCACTTGTCCTTCCAAGACCTTGAGAGAGAATA
TAAGGAGAACCCTAGCGAATTCGATGACTCTTTGGTGATCATAAAGTTTGCATATGCTGC
TTATTACATGGGACGATCGGCTATGATACCATTTTCTCTGCTTTGGATCCCTGTATCAAG
AGG
■■Homology search results ■■ -
sp_hit_id Q9ZLR4
Definition sp|Q9ZLR4|Y567_HELPJ UPF0118 membrane protein jhp_0514 OS=Helicobacter pylori J99
Align length 123
Score (bit) 34.3
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961217|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_I06, 5'
         (663 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZLR4|Y567_HELPJ UPF0118 membrane protein jhp_0514 OS=Helico...    34   0.60 
sp|P40419|GLCU_BACME Probable glucose uptake protein glcU OS=Bac...    32   2.3  
sp|Q6FW61|RIX1_CANGA Pre-rRNA-processing protein RIX1 OS=Candida...    32   3.0  
sp|Q8K4F2|LX15B_RAT Arachidonate 15-lipoxygenase type II OS=Ratt...    31   6.7  
sp|P80370|DLK1_HUMAN Protein delta homolog 1 OS=Homo sapiens GN=...    30   8.7  

>sp|Q9ZLR4|Y567_HELPJ UPF0118 membrane protein jhp_0514
           OS=Helicobacter pylori J99 GN=jhp_0514 PE=3 SV=1
          Length = 349

 Score = 34.3 bits (77), Expect = 0.60
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
 Frame = +2

Query: 251 YYGSVLIYQSAPFIIVALLSLVVVELRKKLNSSSSH--ETEKGISK-----SSPSLTTYP 409
           Y GS +I++    I    LS ++  L+  +  + SH      G+SK     S+ S+T Y 
Sbjct: 76  YKGSNVIFE----INFEKLSALIKWLKGTITENLSHFPAIHDGVSKFLENFSAASITGYL 131

Query: 410 LVIKSFMGVLTS---ADVLFILGILFLVAYTFGRQCHLSFQD-LEREYKENPSEFDDSLV 577
           L + S++G  +     D LFILG+LF   Y +G + +  F   L  E  ++   F++   
Sbjct: 132 LKVSSYIGKYSLKLVTDALFILGLLFFFFY-YGEKFYRYFLGVLPLEMNQSKKIFEEVAG 190

Query: 578 IIK 586
           I++
Sbjct: 191 ILR 193


>sp|P40419|GLCU_BACME Probable glucose uptake protein glcU
           OS=Bacillus megaterium GN=glcU PE=2 SV=1
          Length = 286

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +2

Query: 371 GISKSSPSLTTYPLVIKSFMGVLT----SADVLFILGILFLVAYTFGRQCHLSFQDLERE 538
           G+SK+ P  T   LV  S  GV+     S     ILG+L L+    G          E+E
Sbjct: 83  GVSKTMPISTGLQLVSTSLFGVIVFHEWSTKTSIILGVLALIFIIVGIVLASLQSKEEKE 142

Query: 539 YKENPSEFDDSLVIIKFAYAAY 604
            +E    F   +VI+  +   Y
Sbjct: 143 AEEGKGNFKKGIVILLISTVGY 164


>sp|Q6FW61|RIX1_CANGA Pre-rRNA-processing protein RIX1 OS=Candida
           glabrata GN=RIX1 PE=3 SV=1
          Length = 767

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +2

Query: 305 LSLVVVELRKKLNSSSSHETEKGISKSSPSLTTYPLVIKSFMGVL 439
           LS++VV+++K LNS+S++   KG   +    T  PLV+ ++ G L
Sbjct: 44  LSVLVVKIQKLLNSNSNYSIWKGCHAAVVICTYNPLVLMAYGGKL 88


>sp|Q8K4F2|LX15B_RAT Arachidonate 15-lipoxygenase type II OS=Rattus
           norvegicus GN=Alox15b PE=2 SV=1
          Length = 677

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 65  PSPPKLRLMKVGYYAALLGIAAFSCMWVLWWLLSSEPAD-SPDGHYLD-RLDKHIPSR 232
           P   K +    G+ A L  + A   + +  WLLS EP D  P GHY D    + +P R
Sbjct: 579 PPTSKGQASPEGFIATLPAVNATCDVIIALWLLSKEPGDRRPLGHYPDEHFTEEVPRR 636


>sp|P80370|DLK1_HUMAN Protein delta homolog 1 OS=Homo sapiens
           GN=DLK1 PE=1 SV=2
          Length = 383

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +2

Query: 368 KGISKSSPSLTTYPLVIKSFMGVLTSADVLFILGILFL 481
           K ++K +P LT    +  + +GVLTS  VL  +GI+FL
Sbjct: 290 KELNKKTPLLTEGQAICFTILGVLTSLVVLGTVGIVFL 327
tr_hit_id A9SL39
Definition tr|A9SL39|A9SL39_PHYPA Ferric reductase-like transmembrane component OS=Physcomitrella patens subsp. patens
Align length 176
Score (bit) 57.8
E-value 6.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961217|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_I06, 5'
         (663 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SL39|A9SL39_PHYPA Ferric reductase-like transmembrane compo...    58   6e-07
tr|A9U5F8|A9U5F8_PHYPA Ferric reductase-like transmembrane compo...    47   8e-04
tr|A9RKK9|A9RKK9_PHYPA Ferric reductase like transmembrane compo...    47   0.001
tr|A7PCT0|A7PCT0_VITVI Chromosome chr17 scaffold_12, whole genom...    47   0.001
tr|Q9LMM3|Q9LMM3_ARATH F22L4.12 protein OS=Arabidopsis thaliana ...    43   0.020
tr|P92949|P92949_ARATH FRO2 protein (Ferric-chelate reductase) O...    43   0.020
tr|Q813N9|Q813N9_BACCR Hypothetical Membrane Spanning Protein OS...    41   0.058
tr|B7ITH3|B7ITH3_BACCE Putative uncharacterized protein OS=Bacil...    41   0.058
tr|B7HJG3|B7HJG3_BACCE Putative uncharacterized protein OS=Bacil...    41   0.058
tr|B5UVD2|B5UVD2_BACCE Putative uncharacterized protein OS=Bacil...    41   0.075
tr|A8S154|A8S154_9CLOT Putative uncharacterized protein OS=Clost...    39   0.37 
tr|Q63CB5|Q63CB5_BACCZ Putative uncharacterized protein ycgQ OS=...    37   0.83 
tr|Q6JHP9|Q6JHP9_9PSEU Putative transporter OS=Saccharopolyspora...    37   0.83 
tr|B7HNJ5|B7HNJ5_BACCE Putative uncharacterized protein OS=Bacil...    37   0.83 
tr|B5V490|B5V490_BACCE Putative uncharacterized protein OS=Bacil...    37   0.83 
tr|B6SW74|B6SW74_MAIZE Ferric reductase-like transmembrane compo...    37   0.83 
tr|B7PKK2|B7PKK2_IXOSC Transporter, putative OS=Ixodes scapulari...    37   0.83 
tr|Q4MRI4|Q4MRI4_BACCE YcgQ-like protein OS=Bacillus cereus G924...    37   1.1  
tr|B8A3B5|B8A3B5_MAIZE Putative uncharacterized protein OS=Zea m...    37   1.1  
tr|Q739L9|Q739L9_BACC1 Putative uncharacterized protein OS=Bacil...    37   1.4  
tr|A9VRU9|A9VRU9_BACWK Putative uncharacterized protein OS=Bacil...    37   1.4  
tr|A5JZE8|A5JZE8_PLAVI Putative uncharacterized protein OS=Plasm...    36   1.9  
tr|Q81RJ2|Q81RJ2_BACAN Putative uncharacterized protein OS=Bacil...    36   2.4  
tr|A0RD41|A0RD41_BACAH Putative uncharacterized protein OS=Bacil...    36   2.4  
tr|B7JKP2|B7JKP2_BACCE Putative uncharacterized protein OS=Bacil...    36   2.4  
tr|B3ZSH6|B3ZSH6_BACCE Putative uncharacterized protein OS=Bacil...    36   2.4  
tr|B3Z9K8|B3Z9K8_BACCE Putative uncharacterized protein OS=Bacil...    36   2.4  
tr|B3Z0Y0|B3Z0Y0_BACCE Putative uncharacterized protein OS=Bacil...    36   2.4  
tr|B3J8W9|B3J8W9_BACAN Putative uncharacterized protein OS=Bacil...    36   2.4  
tr|B1UNB2|B1UNB2_BACAN Putative uncharacterized protein OS=Bacil...    36   2.4  

>tr|A9SL39|A9SL39_PHYPA Ferric reductase-like transmembrane
           component OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_165498 PE=4 SV=1
          Length = 760

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 3/176 (1%)
 Frame = +2

Query: 143 WVLWWLLSSEPADSPDGHYLDRLDKHIPSRFFRTDGYYGSVLIYQSAPFIIVALLSLVVV 322
           WV+ W L   P D       D +++   S+F   +G +    +  S P I+ AL +L+ +
Sbjct: 24  WVVEWFLY--PTDRWTSWKADAIEE-TNSKFLELNGPF---FLMWSFPVILFALFALLYL 77

Query: 323 ELRKKLNS---SSSHETEKGISKSSPSLTTYPLVIKSFMGVLTSADVLFILGILFLVAYT 493
           E+ ++L +   SS  +  K   +    L T P+++KS +GVLT  D+L I  ++F   + 
Sbjct: 78  EVDQRLKAKKESSCTDVPKW-KRVWLRLRTQPILVKSLLGVLTGVDLLVISFVVFATMWI 136

Query: 494 FGRQCHLSFQDLEREYKENPSEFDDSLVIIKFAYAAYYMGRSAMIPFSLLWIPVSR 661
           F +      ++++R    N  +      +IK      + GR+  +P +LL+IPVSR
Sbjct: 137 FVKPLIPMLEEVDR----NTMKPGIDRWMIKVGRVGTWTGRAWYLPMALLFIPVSR 188


>tr|A9U5F8|A9U5F8_PHYPA Ferric reductase-like transmembrane
           component OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_173734 PE=4 SV=1
          Length = 782

 Score = 47.4 bits (111), Expect = 8e-04
 Identities = 35/135 (25%), Positives = 76/135 (56%)
 Frame = +2

Query: 257 GSVLIYQSAPFIIVALLSLVVVELRKKLNSSSSHETEKGISKSSPSLTTYPLVIKSFMGV 436
           G +L+  ++P +++ LL+++ +E+  ++ + +  +     +K   SL  +PL I  +MG+
Sbjct: 100 GGLLVLFASPLLVLTLLAIINLEVSSRMVTFNREK-----AKGRASLQKHPLFIGGWMGI 154

Query: 437 LTSADVLFILGILFLVAYTFGRQCHLSFQDLEREYKENPSEFDDSLVIIKFAYAAYYMGR 616
           +++A+ L+IL  LFLV +T+    +L  +D  R +     +  +++   K    A ++G 
Sbjct: 155 VSAAEFLWIL--LFLVMFTWIMGNYL-IRD-SRHFDVTSLKPVETVWSKKLKRTASHLGF 210

Query: 617 SAMIPFSLLWIPVSR 661
             +I  + L++PVSR
Sbjct: 211 FGLICLNFLFLPVSR 225


>tr|A9RKK9|A9RKK9_PHYPA Ferric reductase like transmembrane
           component OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115851 PE=4 SV=1
          Length = 666

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 35/133 (26%), Positives = 63/133 (47%)
 Frame = +2

Query: 263 VLIYQSAPFIIVALLSLVVVELRKKLNSSSSHETEKGISKSSPSLTTYPLVIKSFMGVLT 442
           + +  S P I++ +++   + ++++  S       +   +    L T PLV+  F+GVL 
Sbjct: 1   MFVLYSMPVIVLTIIATAYLAIKQQYPSDLRASWFRRFCRL---LWTRPLVVNEFLGVLN 57

Query: 443 SADVLFILGILFLVAYTFGRQCHLSFQDLEREYKENPSEFDDSLVIIKFAYAAYYMGRSA 622
             D+L IL  +F+V +    +     + L      NP        ++K+      +GR A
Sbjct: 58  GFDLLVILSTIFVVLWMVLNELLPQLRSLH----GNP-----MAGLLKWKPIGVVLGRVA 108

Query: 623 MIPFSLLWIPVSR 661
           ++P SLL IPVSR
Sbjct: 109 VLPISLLLIPVSR 121


>tr|A7PCT0|A7PCT0_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015996001
           PE=4 SV=1
          Length = 692

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 37/138 (26%), Positives = 66/138 (47%)
 Frame = +2

Query: 248 GYYGSVLIYQSAPFIIVALLSLVVVELRKKLNSSSSHETEKGISKSSPSLTTYPLVIKSF 427
           GYYG   +  + P I +A +  V ++L+       S E+ +  ++ S S+ + PLV+ ++
Sbjct: 49  GYYGLNFVVYTFPVIALAAIGFVYLDLQ-------SRESRRRQARRSASVLSNPLVVNNY 101

Query: 428 MGVLTSADVLFILGILFLVAYTFGRQCHLSFQDLEREYKENPSEFDDSLVIIKFAYAAYY 607
           +GVL++ ++L +      +A+TF    H+S  D E+       +        KF   A  
Sbjct: 102 LGVLSALEILAVSLFFLYLAWTF--YVHIS-NDFEKMVPAKSLKRQ-----FKFLRVATR 153

Query: 608 MGRSAMIPFSLLWIPVSR 661
            G  A    +LL +PV R
Sbjct: 154 FGLLAEACLALLLLPVLR 171


>tr|Q9LMM3|Q9LMM3_ARATH F22L4.12 protein OS=Arabidopsis thaliana
           GN=F22L4.12 PE=4 SV=1
          Length = 703

 Score = 42.7 bits (99), Expect = 0.020
 Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 3/145 (2%)
 Frame = +2

Query: 236 FRTDGYYGSV---LIYQSAPFIIVALLSLVVVELRKKLNSSSSHETEKGISKSSPSLTTY 406
           F T  Y+G+    L     P ++VA L  V +  +   N  S H  ++       S    
Sbjct: 62  FGTSTYFGATGTTLFMYMFPMMVVACLGCVYLHFK---NRKSPHHIDRETKGGVWSKLRK 118

Query: 407 PLVIKSFMGVLTSADVLFILGILFLVAYTFGRQCHLSFQDLEREYKENPSEFDDSLVIIK 586
           P+++K  +G+++  ++ F+   + L+ + F      SF  +     ++ +  D+SL   K
Sbjct: 119 PMLVKGPLGIVSVTEITFLAMFVALLLWCFITYLRNSFATIT---PKSAAAHDESLWQAK 175

Query: 587 FAYAAYYMGRSAMIPFSLLWIPVSR 661
              AA  +G    I  + L++PV+R
Sbjct: 176 LESAALRLGLIGNICLAFLFLPVAR 200


>tr|P92949|P92949_ARATH FRO2 protein (Ferric-chelate reductase)
           OS=Arabidopsis thaliana GN=FRO2 PE=2 SV=2
          Length = 725

 Score = 42.7 bits (99), Expect = 0.020
 Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 3/145 (2%)
 Frame = +2

Query: 236 FRTDGYYGSV---LIYQSAPFIIVALLSLVVVELRKKLNSSSSHETEKGISKSSPSLTTY 406
           F T  Y+G+    L     P ++VA L  V +  +   N  S H  ++       S    
Sbjct: 62  FGTSTYFGATGTTLFMYMFPMMVVACLGCVYLHFK---NRKSPHHIDRETKGGVWSKLRK 118

Query: 407 PLVIKSFMGVLTSADVLFILGILFLVAYTFGRQCHLSFQDLEREYKENPSEFDDSLVIIK 586
           P+++K  +G+++  ++ F+   + L+ + F      SF  +     ++ +  D+SL   K
Sbjct: 119 PMLVKGPLGIVSVTEITFLAMFVALLLWCFITYLRNSFATIT---PKSAAAHDESLWQAK 175

Query: 587 FAYAAYYMGRSAMIPFSLLWIPVSR 661
              AA  +G    I  + L++PV+R
Sbjct: 176 LESAALRLGLIGNICLAFLFLPVAR 200


>tr|Q813N9|Q813N9_BACCR Hypothetical Membrane Spanning Protein
           OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
           GN=BC_2037 PE=4 SV=1
          Length = 289

 Score = 41.2 bits (95), Expect = 0.058
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 490 VGDKEEDP*NEENVCTCEHSHETLDHERVSRETW-RAFAYSLFSF 359
           V  KE     E+N C+C+HSH   DH +     W +AF+YSLF F
Sbjct: 53  VFQKEHQKEKEKNDCSCDHSHCGHDHSKDENTWWKKAFSYSLFCF 97


>tr|B7ITH3|B7ITH3_BACCE Putative uncharacterized protein OS=Bacillus
           cereus G9842 GN=BCG9842_B3267 PE=4 SV=1
          Length = 289

 Score = 41.2 bits (95), Expect = 0.058
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 490 VGDKEEDP*NEENVCTCEHSHETLDHERVSRETW-RAFAYSLFSF 359
           V  KE     E+N C+C+HSH   DH +     W +AF+YSLF F
Sbjct: 53  VFQKEHQKEKEKNDCSCDHSHCGHDHSKDENTWWKKAFSYSLFCF 97


>tr|B7HJG3|B7HJG3_BACCE Putative uncharacterized protein OS=Bacillus
           cereus B4264 GN=BCB4264_A2042 PE=4 SV=1
          Length = 289

 Score = 41.2 bits (95), Expect = 0.058
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 490 VGDKEEDP*NEENVCTCEHSHETLDHERVSRETW-RAFAYSLFSF 359
           V  KE     E+N C+C+HSH   DH +     W +AF+YSLF F
Sbjct: 53  VFQKEHQKEKEKNDCSCDHSHCGHDHSKDENTWWKKAFSYSLFCF 97


>tr|B5UVD2|B5UVD2_BACCE Putative uncharacterized protein OS=Bacillus
           cereus AH1134 GN=BCAH1134_2034 PE=4 SV=1
          Length = 289

 Score = 40.8 bits (94), Expect = 0.075
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 490 VGDKEEDP*NEENVCTCEHSHETLDHERVSRETW-RAFAYSLFSF 359
           V  KE     E N C+C+HSH   DH +     W +AF+YSLF F
Sbjct: 53  VFQKEHQKEKERNDCSCDHSHCGHDHSKDENTWWKKAFSYSLFCF 97