DK961247 |
Clone id |
TST39A01NGRL0009_J13 |
Library |
TST39 |
Length |
419 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_J13. 5' end sequence. |
Accession |
DK961247 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL124Contig1 |
Sequence |
ACGAGACAGAGTAACATATGCAGCCCTAACTGAATGCTGCTTATCGTGCCCGTAGCGTCT TACTGGCCGTCGTTTTACAACGTCGAATTGGAAAAGCGCAGTGTCGAAGATCTGATCACC AATGTTGGCTCTGGTGGAGGTGGTGCTCCTGTTGCTGCTGCGGGTGCAGGCGTACCTGCT GGAGGTGGAGCTGCTGCTCCCCCACCTGTTGAAGAGAAAAAGGAGGAACCCAAGGAAGAA AGCGACGACGATATGGGTTTCAGTTTGTTTGATTAGTATGATTGCTTTTGTGCCTGATAG CCCAATTTTGTAGGGATGATAGTATGGTGCTTGTCAAAATTTAAGATGCCGCTGAACCTT GTAATTGCCTTGCTATTCAGTAAAAAACCATGATCACTTAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P52855 |
Definition |
sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays |
Align length |
76 |
Score (bit) |
43.1 |
E-value |
0.0004 |
Report |
 |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7R8D5 |
Definition |
tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
76 |
Score (bit) |
51.6 |
E-value |
2.0e-05 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961247|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0009_J13, 5' (399 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, wh... 52 2e-05 tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genom... 49 1e-04 tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis... 49 1e-04 tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genom... 45 0.001 tr|B6T1K2|B6T1K2_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 44 0.003 tr|B4FUB4|B4FUB4_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 44 0.003 tr|A9T1W7|A9T1W7_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.004 tr|B8LQM7|B8LQM7_PICSI Putative uncharacterized protein OS=Picea... 44 0.005 tr|A9SXV6|A9SXV6_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.005 tr|A9S5K3|A9S5K3_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.005 tr|B6T3C1|B6T3C1_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 43 0.007 tr|B6T361|B6T361_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 43 0.007 tr|A9SDK8|A9SDK8_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.012 tr|A9RTU1|A9RTU1_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.012 tr|Q5I7K5|Q5I7K5_WHEAT Ribosomal protein P1 OS=Triticum aestivum... 42 0.015 tr|B6TQN7|B6TQN7_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 41 0.026 tr|A9PJD8|A9PJD8_POPJC Putative uncharacterized protein OS=Popul... 41 0.026 tr|A9P8R9|A9P8R9_POPTR Putative uncharacterized protein OS=Popul... 41 0.026 tr|Q6XIN9|Q6XIN9_DROYA RpLP1 (Fragment) OS=Drosophila yakuba GN=... 41 0.026 tr|B4Q638|B4Q638_DROSI GD23023 OS=Drosophila simulans GN=GD23023... 41 0.026 tr|B4LTL2|B4LTL2_DROVI GJ17775 OS=Drosophila virilis GN=GJ17775 ... 41 0.026 tr|B4KFI9|B4KFI9_DROMO GI21657 OS=Drosophila mojavensis GN=GI216... 41 0.026 tr|B4JDP3|B4JDP3_DROGR GH11223 OS=Drosophila grimshawi GN=GH1122... 41 0.026 tr|B4ICW8|B4ICW8_DROSE GM16740 OS=Drosophila sechellia GN=GM1674... 41 0.026 tr|B3N7Q2|B3N7Q2_DROER GG24717 OS=Drosophila erecta GN=GG24717 P... 41 0.026 tr|B6T0Z6|B6T0Z6_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 41 0.034 tr|Q70YK7|Q70YK7_BOMMO Acidic ribosomal protein P1 OS=Bombyx mor... 41 0.034 tr|Q5UAU0|Q5UAU0_BOMMO Ribosomal protein P1 OS=Bombyx mori GN=Rp... 41 0.034 tr|B6T1B3|B6T1B3_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 40 0.044 tr|A9PDS2|A9PDS2_POPTR Putative uncharacterized protein OS=Popul... 40 0.057
>tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00011306001 PE=4 SV=1 Length = 111
Score = 51.6 bits (122), Expect = 2e-05 Identities = 30/76 (39%), Positives = 33/76 (43%) Frame = +1
Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225 VPV YWP + +EKRS+EDLITNVGS Sbjct: 36 VPVEPYWPLLFAKLVEKRSIEDLITNVGSGGGGGAVAVAAPTSGGGGGAAAPPPVEEKKE 95
Query: 226 XXXXXSDDDMGFSLFD 273 SDDDMGFSLFD Sbjct: 96 EPKEESDDDMGFSLFD 111
>tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037178001 PE=4 SV=1 Length = 111
Score = 48.9 bits (115), Expect = 1e-04 Identities = 29/76 (38%), Positives = 33/76 (43%) Frame = +1
Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225 V V SYWP+ + +EKR+VEDLI NVGS Sbjct: 36 VEVESYWPALFAKLVEKRNVEDLIANVGSGGGGAPVSAAAPAAGGASAAAAAPVVEEKKE 95
Query: 226 XXXXXSDDDMGFSLFD 273 SDDDMGFSLFD Sbjct: 96 EPKEESDDDMGFSLFD 111
>tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018396 PE=4 SV=1 Length = 111
Score = 48.9 bits (115), Expect = 1e-04 Identities = 29/76 (38%), Positives = 33/76 (43%) Frame = +1
Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225 V V SYWP+ + +EKR+VEDLI NVGS Sbjct: 36 VEVESYWPALFAKLVEKRNVEDLIANVGSGGGGAPVSAAAPAAGGASAAAAAPVVEEKKE 95
Query: 226 XXXXXSDDDMGFSLFD 273 SDDDMGFSLFD Sbjct: 96 EPKEESDDDMGFSLFD 111
>tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000494001 PE=4 SV=1 Length = 111
Score = 45.4 bits (106), Expect = 0.001 Identities = 27/76 (35%), Positives = 32/76 (42%) Frame = +1
Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225 V V SYWP + +EK+SV+DLI NVGS Sbjct: 36 VSVESYWPGLFAKLVEKKSVDDLIMNVGSGGGGAPMAVATMAGGGDAAGAAAPPPEEKKE 95
Query: 226 XXXXXSDDDMGFSLFD 273 SD+DMGFSLFD Sbjct: 96 EPKEESDEDMGFSLFD 111
>tr|B6T1K2|B6T1K2_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 44.3 bits (103), Expect = 0.003 Identities = 29/76 (38%), Positives = 33/76 (43%) Frame = +1
Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225 + V SYWP+ + LEKRSVEDLI +VGS Sbjct: 36 IKVESYWPALFAKLLEKRSVEDLILSVGS--GGGAAPVAAAAPAGGAAAAAAPAAEEKKE 93
Query: 226 XXXXXSDDDMGFSLFD 273 SDDDMGFSLFD Sbjct: 94 EPKEESDDDMGFSLFD 109
>tr|B4FUB4|B4FUB4_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays PE=4 SV=1 Length = 109
Score = 44.3 bits (103), Expect = 0.003 Identities = 29/76 (38%), Positives = 33/76 (43%) Frame = +1
Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225 + V SYWP+ + LEKRSVEDLI +VGS Sbjct: 36 IKVESYWPALFAKLLEKRSVEDLILSVGS--GGGAAPVAASAPAGGAAAAAAPAAEEKKE 93
Query: 226 XXXXXSDDDMGFSLFD 273 SDDDMGFSLFD Sbjct: 94 EPKEESDDDMGFSLFD 109
>tr|A9T1W7|A9T1W7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_139008 PE=4 SV=1 Length = 110
Score = 43.9 bits (102), Expect = 0.004 Identities = 29/76 (38%), Positives = 31/76 (40%) Frame = +1
Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225 V V YWPS + EKRSV+DLITNVG Sbjct: 36 VSVEGYWPSLFAKLCEKRSVDDLITNVGG-GKCGGAAVAVSAAPASSAADEAPQVEEKKE 94
Query: 226 XXXXXSDDDMGFSLFD 273 SDDDMGFSLFD Sbjct: 95 EPKEESDDDMGFSLFD 110
>tr|B8LQM7|B8LQM7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 113
Score = 43.5 bits (101), Expect = 0.005 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Frame = +1
Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 219 V + SYWP + +EKR++EDLI+NVGS Sbjct: 36 VQIESYWPGLFAKLMEKRNIEDLISNVGSGGGGASAAVAVAPSGGAGAPAAAAAPAAEEK 95
Query: 220 XXXXXXXSDDDMGFSLFD 273 SDDDMGFSLFD Sbjct: 96 KEEPKEESDDDMGFSLFD 113
>tr|A9SXV6|A9SXV6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_235143 PE=4 SV=1 Length = 110
Score = 43.5 bits (101), Expect = 0.005 Identities = 29/76 (38%), Positives = 31/76 (40%) Frame = +1
Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225 V V YWPS + EKRSVEDLITNVG Sbjct: 36 VSVEGYWPSLFAKLCEKRSVEDLITNVGG-GGGGAVAMSAAPAAGGAAAAVEAPKEVEKE 94
Query: 226 XXXXXSDDDMGFSLFD 273 SD+DMGFSLFD Sbjct: 95 EPKEESDEDMGFSLFD 110
>tr|A9S5K3|A9S5K3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_124329 PE=4 SV=1 Length = 107
Score = 43.5 bits (101), Expect = 0.005 Identities = 28/76 (36%), Positives = 31/76 (40%) Frame = +1
Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225 V V YWPS + EKRSV+DL+TNVG Sbjct: 36 VSVEGYWPSLFAKLCEKRSVDDLVTNVGG----GGGAVAVSAAPAASAAVEAPKEEEKKE 91
Query: 226 XXXXXSDDDMGFSLFD 273 SDDDMGFSLFD Sbjct: 92 EPKEESDDDMGFSLFD 107
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