DK961247
Clone id TST39A01NGRL0009_J13
Library
Length 419
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_J13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
ACGAGACAGAGTAACATATGCAGCCCTAACTGAATGCTGCTTATCGTGCCCGTAGCGTCT
TACTGGCCGTCGTTTTACAACGTCGAATTGGAAAAGCGCAGTGTCGAAGATCTGATCACC
AATGTTGGCTCTGGTGGAGGTGGTGCTCCTGTTGCTGCTGCGGGTGCAGGCGTACCTGCT
GGAGGTGGAGCTGCTGCTCCCCCACCTGTTGAAGAGAAAAAGGAGGAACCCAAGGAAGAA
AGCGACGACGATATGGGTTTCAGTTTGTTTGATTAGTATGATTGCTTTTGTGCCTGATAG
CCCAATTTTGTAGGGATGATAGTATGGTGCTTGTCAAAATTTAAGATGCCGCTGAACCTT
GTAATTGCCTTGCTATTCAGTAAAAAACCATGATCACTTAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P52855
Definition sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays
Align length 76
Score (bit) 43.1
E-value 0.0004
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961247|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_J13, 5'
(399 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays... 43 4e-04
sp|P08570|RLA1_DROME 60S acidic ribosomal protein P1 OS=Drosophi... 41 0.002
sp|Q8LCW9|RLA11_ARATH 60S acidic ribosomal protein P1-1 OS=Arabi... 38 0.014
sp|Q8LEQ0|RLA13_ARATH 60S acidic ribosomal protein P1-3 OS=Arabi... 35 0.15
sp|O23095|RLA12_ARATH 60S acidic ribosomal protein P1-2 OS=Arabi... 35 0.15
sp|P29763|RLA1_CHLRE 60S acidic ribosomal protein P1 OS=Chlamydo... 34 0.20
sp|P22684|RLA1_DICDI 60S acidic ribosomal protein P1 OS=Dictyost... 31 1.7
sp|Q9HGV0|RLA1_ASPFU 60S acidic ribosomal protein P1 OS=Aspergil... 31 1.7
sp|P02402|RLA1_ARTSA 60S acidic ribosomal protein P1 OS=Artemia ... 31 2.2
sp|P50344|RLA1_CLAHE 60S acidic ribosomal protein P1 OS=Cladospo... 30 4.9
sp|O01359|RLA1_OSCBR 60S acidic ribosomal protein P1 OS=Oscheius... 29 6.3
sp|P91913|RLA1_CAEEL 60S acidic ribosomal protein P1 OS=Caenorha... 29 8.3

>sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays
GN=RPP1A PE=1 SV=1
Length = 109

Score = 43.1 bits (100), Expect = 4e-04
Identities = 28/76 (36%), Positives = 33/76 (43%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
+ V SYWP+ + LEKR+VEDLI +VGS
Sbjct: 36 IKVESYWPALFAKLLEKRNVEDLILSVGS--GGGAAPVAAAAPAGGAAAAAAPAVEEKKE 93

Query: 226 XXXXXSDDDMGFSLFD 273
SDDDMGFSLFD
Sbjct: 94 EAKEESDDDMGFSLFD 109


>sp|P08570|RLA1_DROME 60S acidic ribosomal protein P1 OS=Drosophila
melanogaster GN=RpLP1 PE=1 SV=2
Length = 112

Score = 41.2 bits (95), Expect = 0.002
Identities = 25/76 (32%), Positives = 29/76 (38%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
V V YWP + LE +V+DLITN+GS
Sbjct: 37 VEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKE 96

Query: 226 XXXXXSDDDMGFSLFD 273
SDDDMGF LFD
Sbjct: 97 EESDQSDDDMGFGLFD 112


>sp|Q8LCW9|RLA11_ARATH 60S acidic ribosomal protein P1-1
OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2
Length = 112

Score = 38.1 bits (87), Expect = 0.014
Identities = 23/76 (30%), Positives = 28/76 (36%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
V + SYWP + EKR+V DLI NVG+
Sbjct: 37 VSIESYWPMLFAKMAEKRNVTDLIMNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKD 96

Query: 226 XXXXXSDDDMGFSLFD 273
SD D+GF LFD
Sbjct: 97 EPAEESDGDLGFGLFD 112


>sp|Q8LEQ0|RLA13_ARATH 60S acidic ribosomal protein P1-3
OS=Arabidopsis thaliana GN=RPP1C PE=2 SV=2
Length = 113

Score = 34.7 bits (78), Expect = 0.15
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGS 132
V + SYWP + EKR+V DLI NVG+
Sbjct: 37 VTIESYWPMLFAKMAEKRNVTDLIMNVGA 65


>sp|O23095|RLA12_ARATH 60S acidic ribosomal protein P1-2
OS=Arabidopsis thaliana GN=RPP1B PE=2 SV=2
Length = 113

Score = 34.7 bits (78), Expect = 0.15
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGS 132
V + SYWP + EKR+V DLI NVG+
Sbjct: 37 VEIESYWPMLFAKMAEKRNVTDLIMNVGA 65


>sp|P29763|RLA1_CHLRE 60S acidic ribosomal protein P1
OS=Chlamydomonas reinhardtii PE=3 SV=1
Length = 107

Score = 34.3 bits (77), Expect = 0.20
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGS 132
V V YWP+ + K+S++DLITNVG+
Sbjct: 36 VEVEGYWPALFAKLFAKKSMDDLITNVGA 64


>sp|P22684|RLA1_DICDI 60S acidic ribosomal protein P1
OS=Dictyostelium discoideum GN=rplp1 PE=3 SV=1
Length = 113

Score = 31.2 bits (69), Expect = 1.7
Identities = 21/76 (27%), Positives = 27/76 (35%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
+ VAS+WP Y L K ++ +L+ N GS
Sbjct: 39 ITVASHWPGLYARSLAKVNIPELLLNAGS-SGAAGAAPVAAATSAAAPAAAAKKETKKEE 97

Query: 226 XXXXXSDDDMGFSLFD 273
SDDDMG LFD
Sbjct: 98 VKKEESDDDMGMGLFD 113


>sp|Q9HGV0|RLA1_ASPFU 60S acidic ribosomal protein P1 OS=Aspergillus
fumigatus GN=AFUA_1G06830 PE=3 SV=1
Length = 111

Score = 31.2 bits (69), Expect = 1.7
Identities = 21/77 (27%), Positives = 28/77 (36%)
Frame = +1

Query: 43 IVPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 222
+ V W S + LE + ++DL+TNVGS
Sbjct: 36 VADVEPIWTSLFAKALEGKDIKDLLTNVGS-GGAAAPAAVGGAAAGAAAPAEAAAAEEKK 94

Query: 223 XXXXXXSDDDMGFSLFD 273
SD+DMGF LFD
Sbjct: 95 EEEKEESDEDMGFGLFD 111


>sp|P02402|RLA1_ARTSA 60S acidic ribosomal protein P1 OS=Artemia
salina PE=1 SV=2
Length = 110

Score = 30.8 bits (68), Expect = 2.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGS 132
V V YWP + LE ++ +ITNVGS
Sbjct: 37 VSVEPYWPGLFTKALEGLDLKSMITNVGS 65


>sp|P50344|RLA1_CLAHE 60S acidic ribosomal protein P1
OS=Cladosporium herbarum GN=CLAH12 PE=1 SV=1
Length = 110

Score = 29.6 bits (65), Expect = 4.9
Identities = 21/70 (30%), Positives = 25/70 (35%)
Frame = +1

Query: 64 WPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 243
W S + LE + V+DL+ NVGS S
Sbjct: 43 WTSLFAKALEGKDVKDLLLNVGS--GGGAAPAAGGAAAGGAAAVLDAPAEEKAEEEKEES 100

Query: 244 DDDMGFSLFD 273
DDDMGF LFD
Sbjct: 101 DDDMGFGLFD 110


tr_hit_id A7R8D5
Definition tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, whole genome shotgun sequence OS=Vitis vinifera
Align length 76
Score (bit) 51.6
E-value 2.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961247|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_J13, 5'
(399 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, wh... 52 2e-05
tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genom... 49 1e-04
tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis... 49 1e-04
tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genom... 45 0.001
tr|B6T1K2|B6T1K2_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 44 0.003
tr|B4FUB4|B4FUB4_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 44 0.003
tr|A9T1W7|A9T1W7_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.004
tr|B8LQM7|B8LQM7_PICSI Putative uncharacterized protein OS=Picea... 44 0.005
tr|A9SXV6|A9SXV6_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.005
tr|A9S5K3|A9S5K3_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.005
tr|B6T3C1|B6T3C1_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 43 0.007
tr|B6T361|B6T361_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 43 0.007
tr|A9SDK8|A9SDK8_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.012
tr|A9RTU1|A9RTU1_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.012
tr|Q5I7K5|Q5I7K5_WHEAT Ribosomal protein P1 OS=Triticum aestivum... 42 0.015
tr|B6TQN7|B6TQN7_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 41 0.026
tr|A9PJD8|A9PJD8_POPJC Putative uncharacterized protein OS=Popul... 41 0.026
tr|A9P8R9|A9P8R9_POPTR Putative uncharacterized protein OS=Popul... 41 0.026
tr|Q6XIN9|Q6XIN9_DROYA RpLP1 (Fragment) OS=Drosophila yakuba GN=... 41 0.026
tr|B4Q638|B4Q638_DROSI GD23023 OS=Drosophila simulans GN=GD23023... 41 0.026
tr|B4LTL2|B4LTL2_DROVI GJ17775 OS=Drosophila virilis GN=GJ17775 ... 41 0.026
tr|B4KFI9|B4KFI9_DROMO GI21657 OS=Drosophila mojavensis GN=GI216... 41 0.026
tr|B4JDP3|B4JDP3_DROGR GH11223 OS=Drosophila grimshawi GN=GH1122... 41 0.026
tr|B4ICW8|B4ICW8_DROSE GM16740 OS=Drosophila sechellia GN=GM1674... 41 0.026
tr|B3N7Q2|B3N7Q2_DROER GG24717 OS=Drosophila erecta GN=GG24717 P... 41 0.026
tr|B6T0Z6|B6T0Z6_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 41 0.034
tr|Q70YK7|Q70YK7_BOMMO Acidic ribosomal protein P1 OS=Bombyx mor... 41 0.034
tr|Q5UAU0|Q5UAU0_BOMMO Ribosomal protein P1 OS=Bombyx mori GN=Rp... 41 0.034
tr|B6T1B3|B6T1B3_MAIZE 60S acidic ribosomal protein P1 OS=Zea ma... 40 0.044
tr|A9PDS2|A9PDS2_POPTR Putative uncharacterized protein OS=Popul... 40 0.057

>tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00011306001 PE=4 SV=1
Length = 111

Score = 51.6 bits (122), Expect = 2e-05
Identities = 30/76 (39%), Positives = 33/76 (43%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
VPV YWP + +EKRS+EDLITNVGS
Sbjct: 36 VPVEPYWPLLFAKLVEKRSIEDLITNVGSGGGGGAVAVAAPTSGGGGGAAAPPPVEEKKE 95

Query: 226 XXXXXSDDDMGFSLFD 273
SDDDMGFSLFD
Sbjct: 96 EPKEESDDDMGFSLFD 111


>tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00037178001
PE=4 SV=1
Length = 111

Score = 48.9 bits (115), Expect = 1e-04
Identities = 29/76 (38%), Positives = 33/76 (43%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
V V SYWP+ + +EKR+VEDLI NVGS
Sbjct: 36 VEVESYWPALFAKLVEKRNVEDLIANVGSGGGGAPVSAAAPAAGGASAAAAAPVVEEKKE 95

Query: 226 XXXXXSDDDMGFSLFD 273
SDDDMGFSLFD
Sbjct: 96 EPKEESDDDMGFSLFD 111


>tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_018396 PE=4 SV=1
Length = 111

Score = 48.9 bits (115), Expect = 1e-04
Identities = 29/76 (38%), Positives = 33/76 (43%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
V V SYWP+ + +EKR+VEDLI NVGS
Sbjct: 36 VEVESYWPALFAKLVEKRNVEDLIANVGSGGGGAPVSAAAPAAGGASAAAAAPVVEEKKE 95

Query: 226 XXXXXSDDDMGFSLFD 273
SDDDMGFSLFD
Sbjct: 96 EPKEESDDDMGFSLFD 111


>tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00000494001
PE=4 SV=1
Length = 111

Score = 45.4 bits (106), Expect = 0.001
Identities = 27/76 (35%), Positives = 32/76 (42%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
V V SYWP + +EK+SV+DLI NVGS
Sbjct: 36 VSVESYWPGLFAKLVEKKSVDDLIMNVGSGGGGAPMAVATMAGGGDAAGAAAPPPEEKKE 95

Query: 226 XXXXXSDDDMGFSLFD 273
SD+DMGFSLFD
Sbjct: 96 EPKEESDEDMGFSLFD 111


>tr|B6T1K2|B6T1K2_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays
PE=4 SV=1
Length = 109

Score = 44.3 bits (103), Expect = 0.003
Identities = 29/76 (38%), Positives = 33/76 (43%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
+ V SYWP+ + LEKRSVEDLI +VGS
Sbjct: 36 IKVESYWPALFAKLLEKRSVEDLILSVGS--GGGAAPVAAAAPAGGAAAAAAPAAEEKKE 93

Query: 226 XXXXXSDDDMGFSLFD 273
SDDDMGFSLFD
Sbjct: 94 EPKEESDDDMGFSLFD 109


>tr|B4FUB4|B4FUB4_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays
PE=4 SV=1
Length = 109

Score = 44.3 bits (103), Expect = 0.003
Identities = 29/76 (38%), Positives = 33/76 (43%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
+ V SYWP+ + LEKRSVEDLI +VGS
Sbjct: 36 IKVESYWPALFAKLLEKRSVEDLILSVGS--GGGAAPVAASAPAGGAAAAAAPAAEEKKE 93

Query: 226 XXXXXSDDDMGFSLFD 273
SDDDMGFSLFD
Sbjct: 94 EPKEESDDDMGFSLFD 109


>tr|A9T1W7|A9T1W7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_139008 PE=4 SV=1
Length = 110

Score = 43.9 bits (102), Expect = 0.004
Identities = 29/76 (38%), Positives = 31/76 (40%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
V V YWPS + EKRSV+DLITNVG
Sbjct: 36 VSVEGYWPSLFAKLCEKRSVDDLITNVGG-GKCGGAAVAVSAAPASSAADEAPQVEEKKE 94

Query: 226 XXXXXSDDDMGFSLFD 273
SDDDMGFSLFD
Sbjct: 95 EPKEESDDDMGFSLFD 110


>tr|B8LQM7|B8LQM7_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 113

Score = 43.5 bits (101), Expect = 0.005
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 219
V + SYWP + +EKR++EDLI+NVGS
Sbjct: 36 VQIESYWPGLFAKLMEKRNIEDLISNVGSGGGGASAAVAVAPSGGAGAPAAAAAPAAEEK 95

Query: 220 XXXXXXXSDDDMGFSLFD 273
SDDDMGFSLFD
Sbjct: 96 KEEPKEESDDDMGFSLFD 113


>tr|A9SXV6|A9SXV6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_235143 PE=4 SV=1
Length = 110

Score = 43.5 bits (101), Expect = 0.005
Identities = 29/76 (38%), Positives = 31/76 (40%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
V V YWPS + EKRSVEDLITNVG
Sbjct: 36 VSVEGYWPSLFAKLCEKRSVEDLITNVGG-GGGGAVAMSAAPAAGGAAAAVEAPKEVEKE 94

Query: 226 XXXXXSDDDMGFSLFD 273
SD+DMGFSLFD
Sbjct: 95 EPKEESDEDMGFSLFD 110


>tr|A9S5K3|A9S5K3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_124329 PE=4 SV=1
Length = 107

Score = 43.5 bits (101), Expect = 0.005
Identities = 28/76 (36%), Positives = 31/76 (40%)
Frame = +1

Query: 46 VPVASYWPSFYNVELEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 225
V V YWPS + EKRSV+DL+TNVG
Sbjct: 36 VSVEGYWPSLFAKLCEKRSVDDLVTNVGG----GGGAVAVSAAPAASAAVEAPKEEEKKE 91

Query: 226 XXXXXSDDDMGFSLFD 273
SDDDMGFSLFD
Sbjct: 92 EPKEESDDDMGFSLFD 107