DK961310 |
Clone id |
TST39A01NGRL0009_M07 |
Library |
TST39 |
Length |
669 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_M07. 5' end sequence. |
Accession |
DK961310 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL293Contig1 |
Sequence |
GTGGCAGAAGCGGCATCTACAGACGTCGAGAGGGCAAGGCCAGCTAATGGTGGAGGTTGA ATGGAAGATACCTTCGTTGACACAGGTGCACTAGAAGAGCCCTCTTATCTTCAGCTTCAA CTTCATCGCCACTACCTCGACCACTACTATCACCCGGCCTTTCTAAGGGCATTTCCATGG CTACTCACAGTCTTGTCAGCCAACCTGCTGCATTACAGCTCCCTCTTGCAAGCACGAGCG CATGCGCGAAGGTTGGCGATGGACTCACCCCCACCGCTCTCTTTCACCCTCATGAACTCC CCTTCCATGCGCTTGGTACGCTACAAAATCAAGCTCCTCAGGTACTCTGCAACCCTGATC TTCTTTCTTCTGTTTTGGTCTTTCATACCCGAGATTGCGGTCCCCTTGGAAATGGGTTGG GGCACCATTGAAGCCTCCATTGTGGGCCTCCTTGCCGGCTTCATCACCATCTACTTGAAC GAGAACATGGCCCTTAATATGAGAAATCCATGGAAACCCGCCATCGATTTTCAGTTGGCA AGCTATGGTTGCATGTGGGATATGTTGAGGCTTTTCGGTGCAACCCTGTTGGTCCCCTTT GAAGAGGAGCTGTTCTACCATTCTTGGCTATACAGATACTTGTGCCAGCTTGTGAGCAGA GAGCGGCAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q00203 |
Definition |
sp|Q00203|PACC_ASPNG pH-response transcription factor pacC/RIM101 OS=Aspergillus niger |
Align length |
62 |
Score (bit) |
33.5 |
E-value |
1.0 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961310|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0009_M07, 5' (652 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q00203|PACC_ASPNG pH-response transcription factor pacC/RIM10... 33 1.0 sp|P60409|KR107_HUMAN Keratin-associated protein 10-7 OS=Homo sa... 28 1.5 sp|A4XI01|MRAY_CALS8 Phospho-N-acetylmuramoyl-pentapeptide-trans... 33 1.7 sp|Q80SU6|NPT2C_MOUSE Sodium-dependent phosphate transport prote... 32 2.2 sp|Q8BZ97|PRDM8_MOUSE PR domain zinc finger protein 8 OS=Mus mus... 32 3.8 sp|Q0DK16|NIP13_ORYSJ Aquaporin NIP1-3 OS=Oryza sativa subsp. ja... 32 3.8 sp|P60372|KR104_HUMAN Keratin-associated protein 10-4 OS=Homo sa... 27 5.2 sp|P60410|KR108_HUMAN Keratin-associated protein 10-8 OS=Homo sa... 27 5.4 sp|Q5ZL54|K0907_CHICK UPF0469 protein KIAA0907 homolog OS=Gallus... 31 6.5 sp|Q9Y3E5|PTH2_HUMAN Peptidyl-tRNA hydrolase 2, mitochondrial OS... 30 8.4 sp|Q9RT91|GUAA_DEIRA GMP synthase [glutamine-hydrolyzing] OS=Dei... 30 8.5 sp|P43268|ETV4_HUMAN ETS translocation variant 4 OS=Homo sapiens... 30 8.5
>sp|Q00203|PACC_ASPNG pH-response transcription factor pacC/RIM101 OS=Aspergillus niger GN=PACC PE=2 SV=1 Length = 667
Score = 33.5 bits (75), Expect = 1.0 Identities = 23/62 (37%), Positives = 32/62 (51%) Frame = -2
Query: 420 EASMVPQPISKGTAISGMKDQNRRKKIRVAEYLRSLIL*RTKRMEGEFMRVKESGGGESI 241 EA + T ++ D +K+R+ EYLR+ I R +R GEF ESGGG S Sbjct: 552 EAEATLRTAQAATEVAERADVQWVEKVRLIEYLRNYIASRLER--GEFEN-NESGGGNSS 608
Query: 240 AN 235 +N Sbjct: 609 SN 610
>sp|P60409|KR107_HUMAN Keratin-associated protein 10-7 OS=Homo sapiens GN=KRTAP10-7 PE=2 SV=2 Length = 375
Score = 28.5 bits (62), Expect(2) = 1.5 Identities = 8/12 (66%), Positives = 10/12 (83%) Frame = +3
Query: 177 CQPTCCITAPSC 212 C+PTCC+ PSC Sbjct: 322 CRPTCCVPVPSC 333
Score = 23.1 bits (48), Expect(2) = 1.5 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = +3
Query: 174 SCQPTCCITA 203 SCQP CC T+ Sbjct: 297 SCQPACCTTS 306
>sp|A4XI01|MRAY_CALS8 Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=mraY PE=3 SV=1 Length = 318
Score = 32.7 bits (73), Expect = 1.7 Identities = 25/100 (25%), Positives = 43/100 (43%) Frame = +2
Query: 317 LLRYSATLIFFLLFWSFIPEIAVPLEMGWGTIEASIVGLLAGFITIYLNENMALNMRNPW 496 L+ Y + LI LLF+ P+I PL ++G + F+ + L ++ L R Sbjct: 57 LVIYLSILITSLLFYKKYPQIGAPLVC---ASAFGLIGFIDDFVKVVLKRSLGLRARE-- 111
Query: 497 KPAIDFQLASYGCMWDMLRLFGATLLVPFEEELFYHSWLY 616 K + F L S ++ + + G + +P SW Y Sbjct: 112 KLVLQF-LISITFLYIVKKYLGTDVYIPILNRYVDLSWAY 150
>sp|Q80SU6|NPT2C_MOUSE Sodium-dependent phosphate transport protein 2C OS=Mus musculus GN=Slc34a3 PE=1 SV=1 Length = 601
Score = 32.3 bits (72), Expect = 2.2 Identities = 15/55 (27%), Positives = 28/55 (50%) Frame = +2
Query: 338 LIFFLLFWSFIPEIAVPLEMGWGTIEASIVGLLAGFITIYLNENMALNMRNPWKP 502 +++ LL + +P A L + GT+ A++ G L G + + + N+ R W P Sbjct: 491 IVYLLLTFLLLPLAAFGLSLAGGTVLAAVGGPLVGLVLLIILVNVLQQHRPSWLP 545
>sp|Q8BZ97|PRDM8_MOUSE PR domain zinc finger protein 8 OS=Mus musculus GN=Prdm8 PE=2 SV=1 Length = 687
Score = 31.6 bits (70), Expect = 3.8 Identities = 13/73 (17%), Positives = 33/73 (45%) Frame = -1
Query: 541 PHATIACQLKIDGGFPWISHIKGHVLVQVDGDEAGKEAHNGGFNGAPTHFQGDRNLGYER 362 P+ + C + FP+++H++ ++ +A + GG G H G ++ Sbjct: 153 PYTCLECSQRFQFEFPYVAHLRFRCPKRLHSTDANPQDEQGGGLGTKDHGGGGGGKEQQQ 212
Query: 361 PKQKKEDQGCRVP 323 +Q+++ + +P Sbjct: 213 QQQQQQQEAPLIP 225
>sp|Q0DK16|NIP13_ORYSJ Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2 Length = 286
Score = 31.6 bits (70), Expect = 3.8 Identities = 17/45 (37%), Positives = 19/45 (42%) Frame = -1
Query: 505 GGFPWISHIKGHVLVQVDGDEAGKEAHNGGFNGAPTHFQGDRNLG 371 G FPW + + QV G A A F GAP HF G G Sbjct: 124 GRFPW-RRVPAYAAAQVAGSAAASAALRALFGGAPEHFFGTAPAG 167
>sp|P60372|KR104_HUMAN Keratin-associated protein 10-4 OS=Homo sapiens GN=KRTAP10-4 PE=2 SV=1 Length = 401
Score = 26.6 bits (57), Expect(2) = 5.2 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = +3
Query: 177 CQPTCCITAPSC 212 C+P CC+ PSC Sbjct: 369 CRPACCVPVPSC 380
Score = 23.1 bits (48), Expect(2) = 5.2 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = +3
Query: 174 SCQPTCCITA 203 SCQP CC T+ Sbjct: 344 SCQPACCTTS 353
>sp|P60410|KR108_HUMAN Keratin-associated protein 10-8 OS=Homo sapiens GN=KRTAP10-8 PE=2 SV=2 Length = 259
Score = 26.6 bits (57), Expect(2) = 5.4 Identities = 7/12 (58%), Positives = 9/12 (75%) Frame = +3
Query: 177 CQPTCCITAPSC 212 C+P CC+ PSC Sbjct: 217 CRPACCVPVPSC 228
Score = 23.1 bits (48), Expect(2) = 5.4 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = +3
Query: 174 SCQPTCCITA 203 SCQP CC T+ Sbjct: 192 SCQPACCTTS 201
>sp|Q5ZL54|K0907_CHICK UPF0469 protein KIAA0907 homolog OS=Gallus gallus GN=RCJMB04_7l9 PE=2 SV=1 Length = 619
Score = 30.8 bits (68), Expect = 6.5 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -1
Query: 478 KGHVLVQVDGDEAGKEAHNGGFNGAPTHFQGDRNLGYERPKQKK 347 KG LV GD + +E +GG A T QG +LGY+ P ++ Sbjct: 565 KGFGLVAYAGDSSDEEEEHGGHKNASTFSQG-WSLGYQYPSSQQ 607
>sp|Q9Y3E5|PTH2_HUMAN Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1 Length = 179
Score = 30.4 bits (67), Expect = 8.4 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +3
Query: 504 PSIFSWQAMVACGIC*GFSVQPCWSPLKRSCSTILGYTDT--CASL*AESG 650 PS VACG+C G+S++ C+ L +S T +TDT AS+ +SG Sbjct: 14 PSTLGLAVGVACGMCLGWSLRVCFGMLPKS-KTSKTHTDTESEASILGDSG 63
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TS26 |
Definition |
tr|A9TS26|A9TS26_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
198 |
Score (bit) |
155.0 |
E-value |
2.0e-36 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961310|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0009_M07, 5' (652 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TS26|A9TS26_PHYPA Predicted protein OS=Physcomitrella paten... 155 2e-36 tr|B2EV50|B2EV50_9BACT CAAX prenyl protease-related protein OS=b... 49 2e-04 tr|Q6SKZ8|Q6SKZ8_9CRUS NADH-ubiquinone oxidoreductase chain 5 OS... 39 0.28 tr|B5EA75|B5EA75_GEOBB CAAX prenyl protease-related protein OS=G... 38 0.62 tr|A5G429|A5G429_GEOUR Abortive infection protein OS=Geobacter u... 36 2.3 tr|A1VI31|A1VI31_DESVV Abortive infection protein OS=Desulfovibr... 36 2.3 tr|Q314M1|Q314M1_DESDG CAAX amino terminal protease family prote... 35 3.1 tr|B7DDD1|B7DDD1_DESSA Phosphate ABC transporter, inner membrane... 35 3.1 tr|Q1K3X4|Q1K3X4_DESAC Abortive infection protein OS=Desulfuromo... 35 4.0 tr|A3U1Z9|A3U1Z9_9RHOB CAAX amino terminal protease family prote... 35 4.0 tr|A7RY52|A7RY52_NEMVE Predicted protein OS=Nematostella vectens... 35 5.2 tr|Q74BQ0|Q74BQ0_GEOSL CAAX amino terminal protease family prote... 35 5.2 tr|A3SQB3|A3SQB3_9RHOB CAAX amino terminal protease family prote... 35 5.2 tr|B6MMA8|B6MMA8_BRAFL Putative uncharacterized protein OS=Branc... 35 5.2 tr|Q01PN3|Q01PN3_SOLUE Abortive infection protein OS=Solibacter ... 34 6.8 tr|B2ARF5|B2ARF5_PODAN Predicted CDS Pa_4_7670 OS=Podospora anse... 34 6.8
>tr|A9TS26|A9TS26_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_171612 PE=4 SV=1 Length = 284
Score = 155 bits (393), Expect = 2e-36 Identities = 82/198 (41%), Positives = 111/198 (56%), Gaps = 29/198 (14%) Frame = +2
Query: 146 LRAFPWLLTVLSANLLHY-----------------------------SSXXXXXXXXXXX 238 LR PW+LT++ ANLLHY SS Sbjct: 9 LRITPWILTIICANLLHYRSLLDARNENRERVLAQRVTSKQQAKREASSKDAFEFMRKQA 68
Query: 239 XMDSPPPLSFTLMNSPSMRLVRYKIKLLRYSATLIFFLLFWSFIPEIAVPLEMGWGTIEA 418 L+F LM SP MR RYKIKLLRY+AT ++ L F+ FIPE+ + + ++E Sbjct: 69 TTSKHELLTFDLMRSPIMRKARYKIKLLRYAATSVYILFFYRFIPELNEAYPVNFFSLEC 128
Query: 419 SIVGLLAGFITIYLNENMALNMRNPWKPAIDFQLASYGCMWDMLRLFGATLLVPFEEELF 598 IVG+L+G IT+YLNEN MR W+PA+DF G +WD++RL GA+L VP EEELF Sbjct: 129 LIVGILSGLITVYLNENQDEAMRTLWRPAVDFGSGFLGDIWDVIRLVGASLAVPVEEELF 188
Query: 599 YHSWLYRYLCQLVSRERH 652 YHSW+YRY+ +L+ ++ + Sbjct: 189 YHSWMYRYILKLLHKDEY 206
>tr|B2EV50|B2EV50_9BACT CAAX prenyl protease-related protein OS=bacterium Ellin514 GN=CflavDRAFT_6127 PE=4 SV=1 Length = 209
Score = 49.3 bits (116), Expect = 2e-04 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 5/129 (3%) Frame = +2
Query: 254 PPLSFTLMNSPSMRLVRYKIKLLRYSATLIFFLLFWSFIPEIAVPLEMGWG-TIEASIVG 430 P L F L+ + R + ++ T++ L W P + EM W + EA +VG Sbjct: 6 PFLVFVLLTACQDRFGEASRYWIYFAKTIVGAWLVWMTWPIVK---EMRWAFSWEAVVVG 62
Query: 431 LLAGFITIYLNENMAL--NMRNPWKPAIDFQLASYGCMWDML--RLFGATLLVPFEEELF 598 + I + L+ PW P + F S G W + R+ G+TL+VP EE+F Sbjct: 63 VAVFAIWVGLDPYYPKLGKAGAPWNPNVSFVQGS-GLAWFFILTRIIGSTLVVPPIEEVF 121
Query: 599 YHSWLYRYL 625 Y S+LYRY+ Sbjct: 122 YRSFLYRYI 130
>tr|Q6SKZ8|Q6SKZ8_9CRUS NADH-ubiquinone oxidoreductase chain 5 OS=Hutchinsoniella macracantha GN=nad5 PE=3 SV=1 Length = 578
Score = 38.9 bits (89), Expect = 0.28 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%) Frame = +2
Query: 257 PLSFTLM-NSPSMRLVRYKIKLLRYSATLIFFLLFWSFIPE---IAVPLEMGWGTIEASI 424 PLS T N +++ I LL AT + LL W P I +PL M T+ I Sbjct: 408 PLSLTCSPNDKKNKMMTSPILLLTIMATTVGSLLTWFIFPNPEMICLPLPMKTATLFTII 467
Query: 425 VGLLAGFITIYLNENMALNMRNPWKPAIDFQLASYGCMWDMLRLFGATLLV 577 +G+L G I +N+ +N+ + D MW +++ +T+ + Sbjct: 468 LGMLLGLILSNINQKSNMNLYKKFNKYKDLS----NTMW-FMKIISSTITI 513
>tr|B5EA75|B5EA75_GEOBB CAAX prenyl protease-related protein OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=Gbem_1765 PE=4 SV=1 Length = 237
Score = 37.7 bits (86), Expect = 0.62 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Frame = +2
Query: 401 WGTIEASIVGLLAGFITIYLNENMALNMRNPWKPAIDFQLAS--YGCMWDMLRLFGATLL 574 W T+ +++GLL I+++ + + + +P L + R+ GA L+ Sbjct: 84 WRTVSVALIGLLT--FAIWVSADWVVTLASPLSGFNPMLLPDEVVRVLMTAFRVVGAVLV 141
Query: 575 VPFEEELFYHSWLYRYL 625 VP EE+F+ S+L RYL Sbjct: 142 VPIMEEVFWRSFLLRYL 158
>tr|A5G429|A5G429_GEOUR Abortive infection protein OS=Geobacter uraniireducens (strain Rf4) GN=Gura_2368 PE=4 SV=1 Length = 237
Score = 35.8 bits (81), Expect = 2.3 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Frame = +2
Query: 419 SIVGLLAGFITIYLNENMALNM-----RNPWKPAIDFQLASYGCMWDMLRLFGATLLVPF 583 S++ +++G + L NM N + + P+I Q +R+ GA ++VP Sbjct: 86 SVISIISGIVVFILWINMDWNFTSHPSQQGFNPSI-LQDDRMRTSMTFVRMTGAVIIVPI 144
Query: 584 EEELFYHSWLYRYL 625 EELF+ S+L RY+ Sbjct: 145 MEELFWRSFLIRYI 158
>tr|A1VI31|A1VI31_DESVV Abortive infection protein OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=Dvul_3086 PE=4 SV=1 Length = 274
Score = 35.8 bits (81), Expect = 2.3 Identities = 16/26 (61%), Positives = 20/26 (76%) Frame = +2
Query: 548 LRLFGATLLVPFEEELFYHSWLYRYL 625 +R GATLLVP EELF+ S+L R+L Sbjct: 170 IRFIGATLLVPLAEELFWRSFLLRHL 195
>tr|Q314M1|Q314M1_DESDG CAAX amino terminal protease family protein OS=Desulfovibrio desulfuricans (strain G20) GN=Dde_0824 PE=4 SV=1 Length = 242
Score = 35.4 bits (80), Expect = 3.1 Identities = 16/26 (61%), Positives = 21/26 (80%) Frame = +2
Query: 548 LRLFGATLLVPFEEELFYHSWLYRYL 625 +RL GATL+VP EELF+ S+L RY+ Sbjct: 138 VRLAGATLVVPVMEELFWRSFLIRYI 163
>tr|B7DDD1|B7DDD1_DESSA Phosphate ABC transporter, inner membrane subunit PstC OS=Desulfovibrio salexigens DSM 2638 GN=DesalDRAFT_0921 PE=3 SV=1 Length = 450
Score = 35.4 bits (80), Expect = 3.1 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%) Frame = +2
Query: 386 PLEMGWGTIE--ASIVGLLAGFIT-IYLNENMALNMRNPWKPAIDFQLASYGCMWDMLRL 556 PL +G GT+ +S++ + G +T IYL E L +RN KPA++ A ++ Sbjct: 222 PLIVGSGTVTMLSSLIAIPLGVMTAIYLAEIAPLKVRNIVKPAVEMLAALPSV---VIGF 278
Query: 557 FGATLLVPFEEELF 598 FG ++ PF +E F Sbjct: 279 FGMVVVAPFLQETF 292
>tr|Q1K3X4|Q1K3X4_DESAC Abortive infection protein OS=Desulfuromonas acetoxidans DSM 684 GN=Dace_3195 PE=4 SV=1 Length = 241
Score = 35.0 bits (79), Expect = 4.0 Identities = 16/29 (55%), Positives = 21/29 (72%) Frame = +2
Query: 536 MWDMLRLFGATLLVPFEEELFYHSWLYRY 622 M + RLFGA L+VP EE+F+ S+L RY Sbjct: 133 MMVIARLFGAVLVVPVMEEIFWRSFLIRY 161
>tr|A3U1Z9|A3U1Z9_9RHOB CAAX amino terminal protease family protein OS=Oceanicola batsensis HTCC2597 GN=OB2597_00910 PE=4 SV=1 Length = 519
Score = 35.0 bits (79), Expect = 4.0 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 7/125 (5%) Frame = +2
Query: 260 LSFTLMNSPSMRLVRYKIKLLRYSATLIFFLLFWSFIPEIAVPLEMGWGTIEASIVGLLA 439 L+ TL +P+M Y +++L +A ++ FL + P+ + G +++GL Sbjct: 341 LASTLSQTPAMH---YPLRMLIVAAVVLPFLPVYRAFDWRLDPVALAGG----AVIGLYW 393
Query: 440 GFITIYLNENMALNMRNPWKPAIDFQLASYGCM-------WDMLRLFGATLLVPFEEELF 598 I P ++A YG + W +LR FG +LVP EELF Sbjct: 394 VLI-----------------PVAPAEVAPYGTLTGGFLVLWFLLRGFGTIVLVPLVEELF 436
Query: 599 YHSWL 613 + +L Sbjct: 437 FRDYL 441
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