DK961314 |
Clone id |
TST39A01NGRL0009_M11 |
Library |
TST39 |
Length |
736 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_M11. 5' end sequence. |
Accession |
DK961314 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL77Contig1 |
Sequence |
AGCAATCAAGAAACTTGACCTTGCAAAGGCCAAAAGGTATTTGGAAGATGTGGTGGCCCA CAAGCAGGCTATCCCTTTCCGCCGTTTCTGTGGTGGCGTCGGTAGAACAGCCCAAGCAAA GGCCCGCCATTCTAATGGGCAGGGTAGGTGGCCTGTGAAGTCCGCCCAGTTCCTTCTAGG TTTGCTGAAAAATGCTGAGAGCAATGCAGAGACAAAGGGGCTGGATGTAGATACACTGTA TGTTTCTCACATTCAGGTCAACAAGGCTCAGAAGCAGAGGAGACGTACCTACCGTGCCCA CGGTCGCATCAATCCGTACATGTCTTCCCCTTGCCACATTGAGTTAATTCTTGCTGAGAA GGAAGCCCCTGTGAAGAAAGAGGCGGAGTCTTCAGGAAAGCGGCCTCAGAAAGGTCCAGC ACGCCTCCGCAGTGGCGCCTCCTCTTAGAAATTTCATGTTATCAGCAGCAGTTGACAAGT TGGTTCTGTGCACAAGATGGCAGGACTGCTGCCCATTTCGTGTTTGAGGAATTGTCAGGC TGTCTGGGGAATGAAGCTTTAGGTTCAAAAGCATGGACGATGTGCTTACTTGCTATCAAT CAGCCTTGGTTTAGTTGATCTGGCTGAGCTCAATTTTTGGGGGGTTTAAGTTAAAAGACA TTTTGTTCTGAGGGGAATACTGAAATTTGCAAGTTTTTGCCAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O48557 |
Definition |
sp|O48557|RL17_MAIZE 60S ribosomal protein L17 OS=Zea mays |
Align length |
117 |
Score (bit) |
218.0 |
E-value |
3.0e-56 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SN83 |
Definition |
tr|A9SN83|A9SN83_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
146 |
Score (bit) |
225.0 |
E-value |
2.0e-57 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961314|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0009_M11, 5' (701 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SN83|A9SN83_PHYPA Predicted protein OS=Physcomitrella paten... 225 2e-57 tr|A9NT26|A9NT26_PICSI Putative uncharacterized protein OS=Picea... 225 2e-57 tr|A9SN82|A9SN82_PHYPA Predicted protein (Fragment) OS=Physcomit... 223 1e-56 tr|A9S035|A9S035_PHYPA Predicted protein (Fragment) OS=Physcomit... 223 1e-56 tr|A9TXV0|A9TXV0_PHYPA Predicted protein (Fragment) OS=Physcomit... 222 2e-56 tr|B6T595|B6T595_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 221 4e-56 tr|B6SJV1|B6SJV1_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 221 4e-56 tr|Q6K1W6|Q6K1W6_ORYSJ Os09g0258600 protein OS=Oryza sativa subs... 220 8e-56 tr|A9NT14|A9NT14_PICSI Putative uncharacterized protein OS=Picea... 220 8e-56 tr|A2YZ23|A2YZ23_ORYSI Putative uncharacterized protein OS=Oryza... 220 8e-56 tr|A9RQX8|A9RQX8_PHYPA Predicted protein OS=Physcomitrella paten... 219 1e-55 tr|B6T8W9|B6T8W9_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 219 2e-55 tr|B4FHE4|B4FHE4_MAIZE Putative uncharacterized protein OS=Zea m... 219 2e-55 tr|A9NYW9|A9NYW9_PICSI Putative uncharacterized protein OS=Picea... 219 2e-55 tr|B4FNT0|B4FNT0_MAIZE Putative uncharacterized protein OS=Zea m... 218 3e-55 tr|B3TM08|B3TM08_ELAGV Ribosomal protein OS=Elaeis guineensis va... 218 3e-55 tr|B3TM07|B3TM07_ELAGV Ribosomal protein L17 OS=Elaeis guineensi... 218 3e-55 tr|B6UDY2|B6UDY2_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 217 5e-55 tr|B6SIM9|B6SIM9_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 217 5e-55 tr|B6T1L4|B6T1L4_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 217 7e-55 tr|B6SJH2|B6SJH2_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 216 9e-55 tr|A9PE02|A9PE02_POPTR Putative uncharacterized protein OS=Popul... 213 7e-54 tr|A7PHG3|A7PHG3_VITVI Chromosome chr17 scaffold_16, whole genom... 213 7e-54 tr|A9PJV5|A9PJV5_POPJC Putative uncharacterized protein OS=Popul... 213 1e-53 tr|A9PA96|A9PA96_POPTR Putative uncharacterized protein OS=Popul... 213 1e-53 tr|A7QP85|A7QP85_VITVI Chromosome chr1 scaffold_136, whole genom... 212 2e-53 tr|A5B412|A5B412_VITVI Putative uncharacterized protein OS=Vitis... 212 2e-53 tr|B8B928|B8B928_ORYSI Putative uncharacterized protein OS=Oryza... 211 4e-53 tr|A9PBU5|A9PBU5_POPTR Putative uncharacterized protein OS=Popul... 211 4e-53 tr|A7QP86|A7QP86_VITVI Chromosome chr1 scaffold_136, whole genom... 211 5e-53
>tr|A9SN83|A9SN83_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_165821 PE=3 SV=1 Length = 186
Score = 225 bits (574), Expect = 2e-57 Identities = 116/146 (79%), Positives = 121/146 (82%), Gaps = 1/146 (0%) Frame = +2
Query: 2 AIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLG 181 AIK ++LAKAKRYLEDV AHKQA+PFRRFCGGVGRTAQAKARHSNGQGRWPVKSA FLLG Sbjct: 35 AIKHMELAKAKRYLEDVCAHKQAVPFRRFCGGVGRTAQAKARHSNGQGRWPVKSATFLLG 94
Query: 182 LLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTYRAHGRINPYMSSPCHIELIL-XX 358 LLKNAESNAE KGLDVDTL VSHIQVN+AQKQRRRTYRAHGRINPYMSSPCHIELIL Sbjct: 95 LLKNAESNAEVKGLDVDTLVVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEK 154
Query: 359 XXXXXXXXXXSSGKRPQKGPARLRSG 436 S K +K RLRSG Sbjct: 155 EAPVAKAVEVSEPKTRRKDQGRLRSG 180
>tr|A9NT26|A9NT26_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 183
Score = 225 bits (574), Expect = 2e-57 Identities = 114/148 (77%), Positives = 126/148 (85%), Gaps = 2/148 (1%) Frame = +2
Query: 2 AIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLG 181 A+KKL L KAKRYLEDV+AHKQAIPFRRFCGGVGRTAQAK+R+SNGQGRWPVKSA+FLLG Sbjct: 35 AVKKLSLTKAKRYLEDVIAHKQAIPFRRFCGGVGRTAQAKSRNSNGQGRWPVKSAEFLLG 94
Query: 182 LLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTYRAHGRINPYMSSPCHIELILXXX 361 LLKNAESNAE KGLDVDTLY+SHIQVN+AQKQRRRTYRAHGRINPYMSSPCHIELIL Sbjct: 95 LLKNAESNAEVKGLDVDTLYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEK 154
Query: 362 XXXXXXXXXS--SGKRPQKGPARLRSGA 439 + + ++P+K LRSGA Sbjct: 155 EAPVKKEAETQIAPRKPRKAQT-LRSGA 181
>tr|A9SN82|A9SN82_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_132604 PE=3 SV=1 Length = 229
Score = 223 bits (567), Expect = 1e-56 Identities = 109/117 (93%), Positives = 112/117 (95%) Frame = +2
Query: 2 AIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLG 181 AIK ++LAKAKRYLEDV AHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSA FLLG Sbjct: 34 AIKHMELAKAKRYLEDVCAHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSATFLLG 93
Query: 182 LLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTYRAHGRINPYMSSPCHIELIL 352 LLKNAESNAE KGLDVDTL VSHIQVN+AQKQRRRTYRAHGRINPYMSSPCHIELIL Sbjct: 94 LLKNAESNAEVKGLDVDTLVVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELIL 150
>tr|A9S035|A9S035_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_122013 PE=3 SV=1 Length = 174
Score = 223 bits (567), Expect = 1e-56 Identities = 109/117 (93%), Positives = 112/117 (95%) Frame = +2
Query: 2 AIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLG 181 AIK ++LAKAKRYLEDV AHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSA FLLG Sbjct: 35 AIKHMELAKAKRYLEDVCAHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSATFLLG 94
Query: 182 LLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTYRAHGRINPYMSSPCHIELIL 352 LLKNAESNAE KGLDVDTL VSHIQVN+AQKQRRRTYRAHGRINPYMSSPCHIELIL Sbjct: 95 LLKNAESNAEVKGLDVDTLVVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELIL 151
>tr|A9TXV0|A9TXV0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_152415 PE=3 SV=1 Length = 190
Score = 222 bits (566), Expect = 2e-56 Identities = 108/117 (92%), Positives = 112/117 (95%) Frame = +2
Query: 2 AIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLG 181 AIK ++LAKAKRYLEDV AHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSA FLLG Sbjct: 35 AIKHMELAKAKRYLEDVCAHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSATFLLG 94
Query: 182 LLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTYRAHGRINPYMSSPCHIELIL 352 LLKNAESNAE KGLDVDTL VSHIQVN+AQKQRRRTYRAHGRINPYMSSPCHIEL+L Sbjct: 95 LLKNAESNAEVKGLDVDTLVVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELVL 151
>tr|B6T595|B6T595_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=2 SV=1 Length = 171
Score = 221 bits (563), Expect = 4e-56 Identities = 105/117 (89%), Positives = 113/117 (96%) Frame = +2
Query: 2 AIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLG 181 A++KL L KAKRYLEDV+AHKQAIPFRR+CGGVGRTAQAK+RHSNGQGRWPVKSA+F+L Sbjct: 35 ALRKLSLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILD 94
Query: 182 LLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTYRAHGRINPYMSSPCHIELIL 352 LLKNAESNAE KGLDVDTLYVSHIQVN+AQKQRRRTYRAHGRINPYMSSPCHIELIL Sbjct: 95 LLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELIL 151
>tr|B6SJV1|B6SJV1_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=2 SV=1 Length = 154
Score = 221 bits (563), Expect = 4e-56 Identities = 105/117 (89%), Positives = 113/117 (96%) Frame = +2
Query: 2 AIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLG 181 A++KL L KAKRYLEDV+AHKQAIPFRR+CGGVGRTAQAK+RHSNGQGRWPVKSA+F+L Sbjct: 18 ALRKLSLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILD 77
Query: 182 LLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTYRAHGRINPYMSSPCHIELIL 352 LLKNAESNAE KGLDVDTLYVSHIQVN+AQKQRRRTYRAHGRINPYMSSPCHIELIL Sbjct: 78 LLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELIL 134
>tr|Q6K1W6|Q6K1W6_ORYSJ Os09g0258600 protein OS=Oryza sativa subsp. japonica GN=B1279D09.8 PE=2 SV=1 Length = 171
Score = 220 bits (560), Expect = 8e-56 Identities = 105/117 (89%), Positives = 112/117 (95%) Frame = +2
Query: 2 AIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLG 181 AI+KL L KAKRYLEDV+AHKQAIPFRR+CGGVGRTAQAK+RHSNGQGRWP KSA+F+L Sbjct: 35 AIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILD 94
Query: 182 LLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTYRAHGRINPYMSSPCHIELIL 352 LLKNAESNAE KGLDVDTLYVSHIQVN+AQKQRRRTYRAHGRINPYMSSPCHIELIL Sbjct: 95 LLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELIL 151
>tr|A9NT14|A9NT14_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 183
Score = 220 bits (560), Expect = 8e-56 Identities = 106/117 (90%), Positives = 111/117 (94%) Frame = +2
Query: 2 AIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLG 181 A+KKL LAKAK YLEDV+AHKQAIPFRRFCGGVGRTAQAK+RHSNGQGRWPVKS QFLL Sbjct: 35 AVKKLPLAKAKAYLEDVLAHKQAIPFRRFCGGVGRTAQAKSRHSNGQGRWPVKSVQFLLQ 94
Query: 182 LLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTYRAHGRINPYMSSPCHIELIL 352 LLKNAESNAE KGLDVD LY+SHIQVN+AQKQRRRTYRAHGRINPYMSSPCHIELIL Sbjct: 95 LLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELIL 151
>tr|A2YZ23|A2YZ23_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30588 PE=3 SV=1 Length = 171
Score = 220 bits (560), Expect = 8e-56 Identities = 105/117 (89%), Positives = 112/117 (95%) Frame = +2
Query: 2 AIKKLDLAKAKRYLEDVVAHKQAIPFRRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLG 181 AI+KL L KAKRYLEDV+AHKQAIPFRR+CGGVGRTAQAK+RHSNGQGRWP KSA+F+L Sbjct: 35 AIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILD 94
Query: 182 LLKNAESNAETKGLDVDTLYVSHIQVNKAQKQRRRTYRAHGRINPYMSSPCHIELIL 352 LLKNAESNAE KGLDVDTLYVSHIQVN+AQKQRRRTYRAHGRINPYMSSPCHIELIL Sbjct: 95 LLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELIL 151
|