DK961317
Clone id TST39A01NGRL0009_M14
Library
Length 663
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_M14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
ATTAGCATCCCAAGTCGCAACAGCACATATTGCACTCTTCCCCGCAAGCGTTTCTCTCTG
CAAGGAGTGTCGCAATGGCAGCTGCCACAGTGCTCTCTTCCTCATTTGTGGGGCAAGCCT
CTCTTCTGCGGGAGAGCAATGAGCTGTCCAGCAGGGTAACGGCAGGCGAGGCCCGCGTGC
AGATGAGGTCCTCGAAGAAGTCGGCACCCTCGGGTAGCATCTGGTATGGCGCCGACCGCC
CTCTCTACTTGGGCCCTTTTTCAGGCTCTCCCCCATCCTACCTGACGGGTGAGTTCCCCG
GTGACTACGGCTGGGACACCGCCGGACTGTCCGCCGACCCTGAAACGTTCGCCAAGAACC
GAGAACTAGAGGTTATCCACGCCAGATGGGCCATGCTGGGCGCCCTGGGCTGCGTCACCC
CTGAGCTGCTGGCCAAGAACGGCGTCAAGTTCGGCGAGGCTGTCTGGTTCAAGGCCGGCT
CTCAGATCTTCGCCGACGGCGGCCTGGACTACCTAGGCAACCCCAGCCTGGTGCACGCGC
AGAGCATCCTCGCCATCTGGGCCTGCCAGGTCATTCTCATGGGCGCTGTGGAGGGCTACC
GAGTCGCCGGCGGCCCGTTGGGCGAGGTGTCCGACCCCATCTACCCGGGTGGCCAGTTCG
ACC
■■Homology search results ■■ -
sp_hit_id P15195
Definition sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum
Align length 192
Score (bit) 324.0
E-value 2.0e-88
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961317|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_M14, 5'
(648 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 memb... 324 2e-88
sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B, chlorop... 296 6e-80
sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplast... 295 1e-79
sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9, chlorop... 295 1e-79
sp|P06671|CB22_MAIZE Chlorophyll a-b binding protein, chloroplas... 295 1e-79
sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloropl... 293 5e-79
sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII ty... 293 7e-79
sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chlorop... 292 9e-79
sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2, chloropl... 292 1e-78
sp|P04784|CB21_WHEAT Chlorophyll a-b binding protein, chloroplas... 292 1e-78
sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloropl... 291 2e-78
sp|P12329|CB21_MAIZE Chlorophyll a-b binding protein 1, chloropl... 291 2e-78
sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloro... 291 2e-78
sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 memb... 291 3e-78
sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21, chlorop... 291 3e-78
sp|P27496|CB25_TOBAC Chlorophyll a-b binding protein 50, chlorop... 290 3e-78
sp|P08963|CB22_HORVU Chlorophyll a-b binding protein 2, chloropl... 290 3e-78
sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chlorop... 290 6e-78
sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chlorop... 290 6e-78
sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 memb... 288 2e-77
sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloropl... 288 2e-77
sp|P04782|CB24_PETSP Chlorophyll a-b binding protein 25, chlorop... 288 2e-77
sp|P12332|CB21_SILPR Chlorophyll a-b binding protein, chloroplas... 288 2e-77
sp|P12333|CB2A_SPIOL Chlorophyll a-b binding protein, chloroplas... 287 4e-77
sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protein 1A, chlorop... 286 6e-77
sp|P09756|CB23_SOYBN Chlorophyll a-b binding protein 3, chloropl... 286 6e-77
sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7, chloropl... 285 1e-76
sp|P92919|CB23_APIGR Chlorophyll a-b binding protein, chloroplas... 285 1e-76
sp|P07371|CB22_PEA Chlorophyll a-b binding protein AB80, chlorop... 285 1e-76
sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplas... 285 2e-76

>sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member
F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3
SV=1
Length = 265

Score = 324 bits (831), Expect = 2e-88
Identities = 161/192 (83%), Positives = 169/192 (88%), Gaps = 1/192 (0%)
Frame = +3

Query: 75 MAAATV-LSSSFVGQAXXXXXXXXXXXXVTAGEARVQMRSSKKSAPSGSIWYGADRPLYL 251
MA +T L+S+F GQ V AGEARVQM + K APSGSIWYG+DRPLYL
Sbjct: 1 MATSTAALTSTFSGQQLKPVNELSRK--VGAGEARVQMMAPKSKAPSGSIWYGSDRPLYL 58

Query: 252 GPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPELL 431
GPFSGSPPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH+RWAMLGALGCVTPELL
Sbjct: 59 GPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELL 118

Query: 432 AKNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 611
AKNGVKFGEAVWFKAGSQIFA+GGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG
Sbjct: 119 AKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 178

Query: 612 GPLGEVSDPIYP 647
GPLGEV DPIYP
Sbjct: 179 GPLGEVEDPIYP 190


>sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B,
chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1
Length = 265

Score = 296 bits (758), Expect = 6e-80
Identities = 149/194 (76%), Positives = 159/194 (81%), Gaps = 3/194 (1%)
Frame = +3

Query: 75 MAAATVL--SSSFVGQAXXXXXXXXXXXXVTAGEARVQMRSS-KKSAPSGSIWYGADRPL 245
MAAAT+ S SF GQA +G R+ MR + KSAPS S WYG DR
Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSASEI----SGNGRITMRKAVAKSAPSSSPWYGPDRVK 56

Query: 246 YLGPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPE 425
YLGPFSG PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PE
Sbjct: 57 YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 116

Query: 426 LLAKNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRV 605
LLA+NGVKFGEAVWFKAGSQIF++GGLDYLGNPSLVHAQSILAIWACQV+LMGAVEGYR+
Sbjct: 117 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 176

Query: 606 AGGPLGEVSDPIYP 647
AGGPLGEV DP+YP
Sbjct: 177 AGGPLGEVVDPLYP 190


>sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplastic
OS=Physcomitrella patens PE=3 SV=1
Length = 269

Score = 295 bits (755), Expect = 1e-79
Identities = 146/193 (75%), Positives = 163/193 (84%), Gaps = 2/193 (1%)
Frame = +3

Query: 75 MAAATVL-SSSFVGQAXXXXXXXXXXXXVTAGEARVQMRSS-KKSAPSGSIWYGADRPLY 248
MAAAT + S++ GQ+ + EARV MR + KSA S +IWYGADRP +
Sbjct: 1 MAAATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKF 60

Query: 249 LGPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPEL 428
LGPFSG PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIHARWAMLGALGC+TPEL
Sbjct: 61 LGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPEL 120

Query: 429 LAKNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA 608
LAK+GVKFGEAVWFKAG+QIF++GGLDYLGNPSLVHAQSILAIWACQV+LMGAVEGYRVA
Sbjct: 121 LAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 180

Query: 609 GGPLGEVSDPIYP 647
GGPLGEV+DPIYP
Sbjct: 181 GGPLGEVTDPIYP 193



Score = 31.2 bits (69), Expect = 4.9
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3

Query: 261 SGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPELLAKN 440
+G P +T +D GL+ DP+TFA+ + E+ + R AM G ++
Sbjct: 180 AGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239

Query: 441 G 443
G
Sbjct: 240 G 240


>sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9,
chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1
Length = 265

Score = 295 bits (755), Expect = 1e-79
Identities = 140/165 (84%), Positives = 150/165 (90%), Gaps = 4/165 (2%)
Frame = +3

Query: 165 GEARVQMRSS----KKSAPSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTAGLS 332
GEARV MR + K +A SGS WYG DR LYLGP SG PPSYLTGEFPGDYGWDTAGLS
Sbjct: 26 GEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLS 85

Query: 333 ADPETFAKNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFADGGLDY 512
ADPETFAKNRELEVIH+RWAMLGALGCV PELLA+NGVKFGEAVWFKAGSQIF++GGLDY
Sbjct: 86 ADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDY 145

Query: 513 LGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVSDPIYP 647
LGNPSL+HAQSILAIWACQV+LMGA+EGYRVAGGPLGEV DP+YP
Sbjct: 146 LGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYP 190


>sp|P06671|CB22_MAIZE Chlorophyll a-b binding protein, chloroplastic
OS=Zea mays PE=2 SV=1
Length = 265

Score = 295 bits (755), Expect = 1e-79
Identities = 148/197 (75%), Positives = 162/197 (82%), Gaps = 6/197 (3%)
Frame = +3

Query: 75 MAAATVLSSS--FVGQAXXXXXXXXXXXXVTAGEARVQMRSS----KKSAPSGSIWYGAD 236
MA++T+ SS F G+A + GEARV MR + K +A SGS WYG D
Sbjct: 1 MASSTMALSSTAFAGKAVNVPSS-------SFGEARVTMRKTAAKAKPAAASGSPWYGPD 53

Query: 237 RPLYLGPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCV 416
R LYLGP SG PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV
Sbjct: 54 RVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCV 113

Query: 417 TPELLAKNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG 596
PELLA+NGVKFGEAVWFKAGSQIF++GGLDYLGNPSL+HAQSILAIWACQV+LMGAVEG
Sbjct: 114 FPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG 173

Query: 597 YRVAGGPLGEVSDPIYP 647
YR+AGGPLGEV DP+YP
Sbjct: 174 YRIAGGPLGEVVDPLYP 190


>sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1,
chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R
PE=2 SV=2
Length = 265

Score = 293 bits (750), Expect = 5e-79
Identities = 148/196 (75%), Positives = 162/196 (82%), Gaps = 5/196 (2%)
Frame = +3

Query: 75 MAAATV-LSSSFVGQAXXXXXXXXXXXXVTAGEARVQMRSS----KKSAPSGSIWYGADR 239
MAAAT+ LSS + +A GEAR+ MR + K +A SGS WYGADR
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALF------GEARITMRKTAAKPKPAASSGSPWYGADR 54

Query: 240 PLYLGPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVT 419
LYLGP SG PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH+RWAMLGALGCV
Sbjct: 55 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 114

Query: 420 PELLAKNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGY 599
PELLA+NGVKFGEAVWFKAGSQIF++GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGY
Sbjct: 115 PELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGY 174

Query: 600 RVAGGPLGEVSDPIYP 647
R+AGGPLGEV DP+YP
Sbjct: 175 RIAGGPLGEVVDPLYP 190


>sp|P08221|CB21_CUCSA Chlorophyll a-b binding protein of LHCII type
I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1
Length = 255

Score = 293 bits (749), Expect = 7e-79
Identities = 138/162 (85%), Positives = 149/162 (91%), Gaps = 1/162 (0%)
Frame = +3

Query: 165 GEARVQMR-SSKKSAPSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTAGLSADP 341
G A+ MR ++ KS SGS WYG DR YLGPFSG PPSYLTGEFPGDYGWDTAGLSADP
Sbjct: 19 GNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 78

Query: 342 ETFAKNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFADGGLDYLGN 521
ETFAKNRELEVIH+RWAMLGALGCV PELL++NGVKFGEAVWFKAGSQIF++GGLDYLGN
Sbjct: 79 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGN 138

Query: 522 PSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVSDPIYP 647
PSLVHAQSILAIWACQV+LMGAVEGYR+AGGPLGEV+DPIYP
Sbjct: 139 PSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYP 180


>sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16,
chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1
Length = 266

Score = 292 bits (748), Expect = 9e-79
Identities = 146/193 (75%), Positives = 154/193 (79%), Gaps = 3/193 (1%)
Frame = +3

Query: 78 AAATVLSSSFVGQAXXXXXXXXXXXXVTAGEARVQMR---SSKKSAPSGSIWYGADRPLY 248
A+ T LSS F G+A G +V MR S K SGS WYG DR Y
Sbjct: 3 ASTTALSSPFAGKAVKLSPSSSE----VTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKY 58

Query: 249 LGPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPEL 428
LGPFSG PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PEL
Sbjct: 59 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118

Query: 429 LAKNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA 608
LA+NGVKFGEAVWFKAGSQIF++GGLDYLGNPSLVHAQSILAIWACQV+LMGAVEGYRVA
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 178

Query: 609 GGPLGEVSDPIYP 647
GGPLGEV DP+YP
Sbjct: 179 GGPLGEVVDPLYP 191


>sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2,
chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R
PE=2 SV=2
Length = 261

Score = 292 bits (747), Expect = 1e-78
Identities = 139/164 (84%), Positives = 148/164 (90%), Gaps = 3/164 (1%)
Frame = +3

Query: 165 GEARVQMRSSK---KSAPSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTAGLSA 335
GE R+ MR S K A SGS WYGADR LYLGP SG PPSYLTGEFPGDYGWDTAGLSA
Sbjct: 23 GEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSA 82

Query: 336 DPETFAKNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFADGGLDYL 515
DPETFAKNRELEVIH+RWAMLGALGCV PELLA+NGVKFGEAVWFKAGSQIF++GGLDYL
Sbjct: 83 DPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYL 142

Query: 516 GNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVSDPIYP 647
GNPSL+HAQSILAIWA QV+LMGAVEGYR+AGGPLGEV DP+YP
Sbjct: 143 GNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYP 186


>sp|P04784|CB21_WHEAT Chlorophyll a-b binding protein, chloroplastic
OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1
Length = 266

Score = 292 bits (747), Expect = 1e-78
Identities = 146/196 (74%), Positives = 158/196 (80%), Gaps = 5/196 (2%)
Frame = +3

Query: 75 MAAATVL--SSSFVGQAXXXXXXXXXXXXVTAGEARVQMRSSK---KSAPSGSIWYGADR 239
MAA T+ SSSF G+A G+ARV MR + K S S WYG+DR
Sbjct: 1 MAATTMSLSSSSFAGKAVKNLPSS-----ALIGDARVNMRKTAAKAKQVSSSSPWYGSDR 55

Query: 240 PLYLGPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVT 419
LYLGP SG PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV
Sbjct: 56 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 115

Query: 420 PELLAKNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGY 599
PELLA+NGVKFGEA WFKAGSQIF+DGGLDYLGNPSLVHAQS+LAIWACQV+LMGAVEGY
Sbjct: 116 PELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGY 175

Query: 600 RVAGGPLGEVSDPIYP 647
R+AGGPLGE+ DP+YP
Sbjct: 176 RIAGGPLGEIVDPLYP 191


tr_hit_id Q9M600
Definition tr|Q9M600|Q9M600_EUPES Chlorophyll a/b binding protein OS=Euphorbia esula
Align length 194
Score (bit) 300.0
E-value 5.0e-80
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961317|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_M14, 5'
(648 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9M600|Q9M600_EUPES Chlorophyll a/b binding protein OS=Euphor... 300 5e-80
tr|A9TL35|A9TL35_PHYPA Predicted protein OS=Physcomitrella paten... 299 1e-79
tr|Q32291|Q32291_GOSHI Chlorophyll A/B binding protein OS=Gossyp... 298 2e-79
tr|Q9SXW8|Q9SXW8_PHYPA Chlorophyll a/b-binding protein OS=Physco... 298 2e-79
tr|Q39768|Q39768_GINBI Light-harvesting chlorophyll a/b binding ... 298 2e-79
tr|O24401|O24401_WHEAT Chlorophyll a/b-binding protein WCAB OS=T... 298 2e-79
tr|A9T914|A9T914_PHYPA Predicted protein OS=Physcomitrella paten... 298 2e-79
tr|A9T769|A9T769_PHYPA Predicted protein OS=Physcomitrella paten... 298 2e-79
tr|Q765P5|Q765P5_PHYPA Light-harvesting chlorophyll a/b-binding ... 297 3e-79
tr|Q84U94|Q84U94_CITLI Chlorophyll a/b-binding protein (Fragment... 297 4e-79
tr|B6T2Y9|B6T2Y9_MAIZE Chlorophyll a-b binding protein 2 OS=Zea ... 296 6e-79
tr|Q41421|Q41421_SOLTU Chlorophyll a/b binding protein OS=Solanu... 296 7e-79
tr|Q40247|Q40247_LACSA Light-harvesting chlorophyll a/b-binding ... 296 9e-79
tr|A9RJS3|A9RJS3_PHYPA Predicted protein OS=Physcomitrella paten... 296 9e-79
tr|Q1EP45|Q1EP45_MUSBA Chlorophyll A-B binding protein (CAB), pu... 295 1e-78
tr|B4FUA1|B4FUA1_MAIZE Chlorophyll a-b binding protein 1 OS=Zea ... 295 1e-78
tr|A9RAS2|A9RAS2_PHYPA Predicted protein OS=Physcomitrella paten... 295 1e-78
tr|Q8W0E6|Q8W0E6_ORYSJ cDNA clone:001-013-E06, full insert seque... 295 2e-78
tr|Q41422|Q41422_SOLTU Chlorophyll a/b binding protein OS=Solanu... 295 2e-78
tr|B4FQ80|B4FQ80_MAIZE Chlorophyll a-b binding protein 2 OS=Zea ... 295 2e-78
tr|A9S6F4|A9S6F4_PHYPA Predicted protein OS=Physcomitrella paten... 295 2e-78
tr|A9RT62|A9RT62_PHYPA Predicted protein OS=Physcomitrella paten... 295 2e-78
tr|A7QQL7|A7QQL7_VITVI Chromosome undetermined scaffold_143, who... 295 2e-78
tr|A5BAI4|A5BAI4_VITVI Putative uncharacterized protein (Chromos... 295 2e-78
tr|A5B5I4|A5B5I4_VITVI Putative uncharacterized protein OS=Vitis... 295 2e-78
tr|A2WUJ5|A2WUJ5_ORYSI Putative uncharacterized protein OS=Oryza... 295 2e-78
tr|Q4VV55|Q4VV55_9CONI Chloroplast light harvesting chlorophyll ... 295 2e-78
tr|Q4VV54|Q4VV54_PINLA Chloroplast light harvesting chlorophyll ... 295 2e-78
tr|Q4VV53|Q4VV53_PINMO Chloroplast light harvesting chlorophyll ... 295 2e-78
tr|Q4VV52|Q4VV52_PINST Chloroplast light harvesting chlorophyll ... 295 2e-78

>tr|Q9M600|Q9M600_EUPES Chlorophyll a/b binding protein OS=Euphorbia
esula PE=2 SV=1
Length = 268

Score = 300 bits (768), Expect = 5e-80
Identities = 148/194 (76%), Positives = 160/194 (82%), Gaps = 2/194 (1%)
Frame = +3

Query: 72 AMAAATVLSSSFVGQAXXXXXXXXXXXXVTAGEARVQMR--SSKKSAPSGSIWYGADRPL 245
A ++ + S SF GQA G RV MR ++KK APSGS WYG DR
Sbjct: 3 ASSSMALSSPSFAGQAVKLSPSSASELM---GNGRVSMRKAATKKVAPSGSPWYGPDRVK 59

Query: 246 YLGPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPE 425
YLGPFSG PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH+RWAMLGALGCV PE
Sbjct: 60 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 119

Query: 426 LLAKNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRV 605
LLA+NGVKFGEAVWFKAGSQIF++GGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+
Sbjct: 120 LLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI 179

Query: 606 AGGPLGEVSDPIYP 647
AGGPLGEV DPIYP
Sbjct: 180 AGGPLGEVVDPIYP 193


>tr|A9TL35|A9TL35_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_108362 PE=4 SV=1
Length = 263

Score = 299 bits (765), Expect = 1e-79
Identities = 148/191 (77%), Positives = 159/191 (83%)
Frame = +3

Query: 75 MAAATVLSSSFVGQAXXXXXXXXXXXXVTAGEARVQMRSSKKSAPSGSIWYGADRPLYLG 254
MAAAT + S+ + V EARV MR KS+ S SIWYGADRP +LG
Sbjct: 1 MAAATAMHSTTLAGQSLLKPVNELSRKVGTSEARVSMR---KSSGSDSIWYGADRPKFLG 57

Query: 255 PFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPELLA 434
PFSG PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIHARWAMLGALGCVTPELLA
Sbjct: 58 PFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLA 117

Query: 435 KNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 614
KNGVKFGEAVWFKAG+QIF++GGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG
Sbjct: 118 KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 177

Query: 615 PLGEVSDPIYP 647
PLGEV+DPIYP
Sbjct: 178 PLGEVTDPIYP 188


>tr|Q32291|Q32291_GOSHI Chlorophyll A/B binding protein OS=Gossypium
hirsutum PE=3 SV=1
Length = 264

Score = 298 bits (763), Expect = 2e-79
Identities = 138/161 (85%), Positives = 147/161 (91%)
Frame = +3

Query: 165 GEARVQMRSSKKSAPSGSIWYGADRPLYLGPFSGSPPSYLTGEFPGDYGWDTAGLSADPE 344
G RV MR + K PSGS WYG DR LYLGP SG PPSYLTGEFPGDYGWDTAGLSADPE
Sbjct: 29 GTGRVSMRKTTKPVPSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE 88

Query: 345 TFAKNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFADGGLDYLGNP 524
TFA+NRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAGSQIF++GGLDYLGNP
Sbjct: 89 TFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 148

Query: 525 SLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVSDPIYP 647
SL+HAQSILAIWACQVILMGAVEGYR+AGGPLGEV+DP+YP
Sbjct: 149 SLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYP 189


>tr|Q9SXW8|Q9SXW8_PHYPA Chlorophyll a/b-binding protein
OS=Physcomitrella patens PE=2 SV=1
Length = 268

Score = 298 bits (762), Expect = 2e-79
Identities = 145/190 (76%), Positives = 161/190 (84%), Gaps = 1/190 (0%)
Frame = +3

Query: 81 AATVLSSSFVGQAXXXXXXXXXXXXVTAGEARVQMRSS-KKSAPSGSIWYGADRPLYLGP 257
AAT ++S+ + V AGEARV MR + KS+ S SIWYGADRP +LGP
Sbjct: 4 AATAMNSTVLAGQALLKPVSELSRKVNAGEARVTMRKTVSKSSGSDSIWYGADRPKFLGP 63

Query: 258 FSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPELLAK 437
FSG PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIHARWAMLGALGC+TPELLAK
Sbjct: 64 FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAK 123

Query: 438 NGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP 617
+GVKFGEAVWFKAG+QIF++GGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP
Sbjct: 124 SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP 183

Query: 618 LGEVSDPIYP 647
LG+V+DPIYP
Sbjct: 184 LGDVTDPIYP 193


>tr|Q39768|Q39768_GINBI Light-harvesting chlorophyll a/b binding
protein of photosystem II OS=Ginkgo biloba PE=2 SV=1
Length = 270

Score = 298 bits (762), Expect = 2e-79
Identities = 148/194 (76%), Positives = 159/194 (81%), Gaps = 3/194 (1%)
Frame = +3

Query: 75 MAAATVLSSSFVGQAXXXXXXXXXXXXVTAGEARVQMR---SSKKSAPSGSIWYGADRPL 245
MA+A V SS+F GQ GE R+ MR S K A SGS WYG DR
Sbjct: 4 MASAGVASSAFAGQIVLKPQNEFVGG--VHGEGRITMRKTASKKVVASSGSPWYGPDRVK 61

Query: 246 YLGPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPE 425
YLGPFSG PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH+RWAMLGALGCV PE
Sbjct: 62 YLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 121

Query: 426 LLAKNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRV 605
LL++NGVKFGEAVWFKAGSQIF+DGGLDYLGNPSL+HAQSILAIWACQVILMGAVEGYR+
Sbjct: 122 LLSRNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRI 181

Query: 606 AGGPLGEVSDPIYP 647
AGGPLGE++DPIYP
Sbjct: 182 AGGPLGEITDPIYP 195


>tr|O24401|O24401_WHEAT Chlorophyll a/b-binding protein WCAB
OS=Triticum aestivum GN=Wcab PE=2 SV=1
Length = 266

Score = 298 bits (762), Expect = 2e-79
Identities = 150/196 (76%), Positives = 161/196 (82%), Gaps = 5/196 (2%)
Frame = +3

Query: 75 MAAATVL--SSSFVGQAXXXXXXXXXXXXVTAGEARVQMRSSK---KSAPSGSIWYGADR 239
MAAAT+ SS+F G+A GEARV MR + K SGS WYGADR
Sbjct: 1 MAAATMSLSSSTFAGKAVKNVPSL-----ALLGEARVTMRKTAAKAKQVSSGSPWYGADR 55

Query: 240 PLYLGPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVT 419
LYLGP SG PPSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCV
Sbjct: 56 VLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVF 115

Query: 420 PELLAKNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGY 599
PELLA+NGVKFGEAVWFKAGSQIF++GGLDYLGNPSLVHAQSILAIWACQV+LMGAVEGY
Sbjct: 116 PELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 175

Query: 600 RVAGGPLGEVSDPIYP 647
RVAGGPLGE+ DP+YP
Sbjct: 176 RVAGGPLGEIVDPLYP 191


>tr|A9T914|A9T914_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_220036 PE=4 SV=1
Length = 263

Score = 298 bits (762), Expect = 2e-79
Identities = 148/191 (77%), Positives = 160/191 (83%)
Frame = +3

Query: 75 MAAATVLSSSFVGQAXXXXXXXXXXXXVTAGEARVQMRSSKKSAPSGSIWYGADRPLYLG 254
MAAAT +S+ + V A EARV MR KSA S SIWYGADRP +LG
Sbjct: 1 MAAATACASTALAGQSLLKPVNELSRRVGANEARVTMR---KSAGSDSIWYGADRPKFLG 57

Query: 255 PFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPELLA 434
PFSG PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIHARWAMLGALGC+TPELLA
Sbjct: 58 PFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLA 117

Query: 435 KNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 614
K+GVKFGEAVWFKAG+QIF++GGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG
Sbjct: 118 KSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 177

Query: 615 PLGEVSDPIYP 647
PLGEV+DPIYP
Sbjct: 178 PLGEVTDPIYP 188


>tr|A9T769|A9T769_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_219547 PE=4 SV=1
Length = 268

Score = 298 bits (762), Expect = 2e-79
Identities = 145/190 (76%), Positives = 161/190 (84%), Gaps = 1/190 (0%)
Frame = +3

Query: 81 AATVLSSSFVGQAXXXXXXXXXXXXVTAGEARVQMRSS-KKSAPSGSIWYGADRPLYLGP 257
AAT ++S+ + V AGEARV MR + KS+ S SIWYGADRP +LGP
Sbjct: 4 AATAMNSTVLAGQALLKPVSELSRKVNAGEARVTMRKTVSKSSGSDSIWYGADRPKFLGP 63

Query: 258 FSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPELLAK 437
FSG PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIHARWAMLGALGC+TPELLAK
Sbjct: 64 FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAK 123

Query: 438 NGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP 617
+GVKFGEAVWFKAG+QIF++GGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP
Sbjct: 124 SGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP 183

Query: 618 LGEVSDPIYP 647
LG+V+DPIYP
Sbjct: 184 LGDVTDPIYP 193


>tr|Q765P5|Q765P5_PHYPA Light-harvesting chlorophyll a/b-binding
protein 2 (Predicted protein) OS=Physcomitrella patens
subsp. patens GN=PpLhcb2 PE=4 SV=1
Length = 267

Score = 297 bits (761), Expect = 3e-79
Identities = 147/192 (76%), Positives = 160/192 (83%), Gaps = 1/192 (0%)
Frame = +3

Query: 75 MAAATVLSSSFVGQAXXXXXXXXXXXXVTAGEARVQMRSS-KKSAPSGSIWYGADRPLYL 251
MAA T +S+ + V + +ARV MR + KSA S SIWYGADRP YL
Sbjct: 1 MAACTACASTALAGQSLLKPVNELSRKVGSSQARVTMRRTVNKSAGSDSIWYGADRPKYL 60

Query: 252 GPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPELL 431
GPFSG PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIHARWAMLGALGCVTPELL
Sbjct: 61 GPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELL 120

Query: 432 AKNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 611
AK+GVKFGEAVWFKAG+QIF++GGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG
Sbjct: 121 AKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG 180

Query: 612 GPLGEVSDPIYP 647
GPLGEV+DPIYP
Sbjct: 181 GPLGEVTDPIYP 192


>tr|Q84U94|Q84U94_CITLI Chlorophyll a/b-binding protein (Fragment)
OS=Citrus limon PE=4 SV=1
Length = 216

Score = 297 bits (760), Expect = 4e-79
Identities = 147/193 (76%), Positives = 161/193 (83%), Gaps = 2/193 (1%)
Frame = +3

Query: 75 MAAATV-LSSSFVGQAXXXXXXXXXXXXVTAGEARVQMRSS-KKSAPSGSIWYGADRPLY 248
MA AT+ LSSSFVG+A + R+ MR + KS SGS WYG DR Y
Sbjct: 1 MATATMALSSSFVGKAVNLAPSGNEL----SNGGRISMRKTGSKSVSSGSPWYGPDRVKY 56

Query: 249 LGPFSGSPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVTPEL 428
LGPFSG PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PEL
Sbjct: 57 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 116

Query: 429 LAKNGVKFGEAVWFKAGSQIFADGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA 608
LA+NGVKFGEAVWFKAG+QIF++GGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+A
Sbjct: 117 LARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA 176

Query: 609 GGPLGEVSDPIYP 647
GGPLGEV+DP+YP
Sbjct: 177 GGPLGEVTDPLYP 189