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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961361
Clone id TST39A01NGRL0009_O12
Library
Length 666
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_O12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTGAATCCAACTGTATCTTAGTTATCTGTGTAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGCTGGTTTGTCCCCAACCCAATTCATCTATATGTAAGAGGAAGGGAAACTGCAAC
TGTGTTTCTCTTGTGTGTGTGTGTCTGTGCGTGTGTGTGTGTGTGTGCGGGCGAACGTGC
TTCTCTCTCATCTTTCAAGCTGTAGCCATGTATGGAAGCCCGCTCCTACCAATCCTCACC
TCTTCTAAGAAAGCGTCCTCCTCGGATCAGCAGGCTGCAGAGCTTCTCGCTGTGGATGAC
CTTCTTGACAACCCGTGGCACTATGATTGCGTTGTCAGCCCCAGACTGATAAGCTCTGAT
TTAGCCCCTAAATCACCAGTTTTTCTCTCTAAGCGCTCTGCGCCGGCAGCCTACAGTCGC
CCATTATCACCACCTCTCTCTGGCCGTAAGCCATCAGCCAATCCCCCATTAACACCGCCT
CCTCTCTCTAAATCATCAGCCAATCGCCGGCCACTATCACCGCTTTCTCTCGCTAGATCA
CCAACCAATTACCCATCTTCGACTCTCTCTAAGCCGGCCGCCTGCAACCCATCATCGTCG
TCTTCGTTCATCAAACCTATCAACAGAATATTGATTACGCAGGCGAGCTCTAATTACGTC
AGCTTG
■■Homology search results ■■ -
sp_hit_id Q9LM89
Definition sp|Q9LM89|FB12_ARATH Putative F-box protein At1g20660 OS=Arabidopsis thaliana
Align length 47
Score (bit) 30.8
E-value 6.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961361|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_O12, 5'
         (666 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LM89|FB12_ARATH Putative F-box protein At1g20660 OS=Arabido...    31   6.8  

>sp|Q9LM89|FB12_ARATH Putative F-box protein At1g20660
           OS=Arabidopsis thaliana GN=At1g20660 PE=4 SV=1
          Length = 422

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 508 RPLSPLSLARSPTNYPSSTLSKPAACNPSSSSSFIKP---INRILIT 639
           R  SPL+   S  N    T+SKP  CNPS+  S+  P    NR +IT
Sbjct: 130 RDSSPLA---SYENLKGRTISKPLICNPSTGESWPLPRVKTNRTIIT 173
tr_hit_id B4MFI0
Definition tr|B4MFI0|B4MFI0_DROVI GJ15053 OS=Drosophila virilis
Align length 96
Score (bit) 40.8
E-value 0.076
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961361|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_O12, 5'
         (666 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4MFI0|B4MFI0_DROVI GJ15053 OS=Drosophila virilis GN=GJ15053 ...    41   0.076
tr|B6MYU8|B6MYU8_BRAFL Putative uncharacterized protein OS=Branc...    37   1.4  
tr|A7SDS3|A7SDS3_NEMVE Predicted protein (Fragment) OS=Nematoste...    36   1.9  
tr|Q4UH86|Q4UH86_THEAN Putative uncharacterized protein OS=Theil...    36   2.5  
tr|A1YL96|A1YL96_GOSHI Proline-rich protein OS=Gossypium hirsutu...    35   3.2  
tr|B6PPL3|B6PPL3_BRAFL Putative uncharacterized protein (Fragmen...    35   3.2  
tr|A7T4B6|A7T4B6_NEMVE Predicted protein (Fragment) OS=Nematoste...    35   4.2  
tr|A7T4B5|A7T4B5_NEMVE Predicted protein (Fragment) OS=Nematoste...    35   4.2  
tr|Q4SWU2|Q4SWU2_TETNG Chromosome undetermined SCAF13514, whole ...    35   5.5  
tr|A7SL78|A7SL78_NEMVE Predicted protein OS=Nematostella vectens...    35   5.5  
tr|A8Q6L1|A8Q6L1_MALGO Putative uncharacterized protein OS=Malas...    35   5.5  
tr|A6QZG2|A6QZG2_AJECN Predicted protein OS=Ajellomyces capsulat...    35   5.5  
tr|A3VZ08|A3VZ08_9RHOB Transposase OS=Roseovarius sp. 217 GN=ROS...    34   7.1  
tr|Q8WMT5|Q8WMT5_SORAR BRCA1 (Fragment) OS=Sorex araneus GN=BRCA...    34   9.3  
tr|B4LZG8|B4LZG8_DROVI GJ23266 OS=Drosophila virilis GN=GJ23266 ...    34   9.3  

>tr|B4MFI0|B4MFI0_DROVI GJ15053 OS=Drosophila virilis GN=GJ15053
           PE=4 SV=1
          Length = 496

 Score = 40.8 bits (94), Expect = 0.076
 Identities = 28/96 (29%), Positives = 38/96 (39%)
 Frame = +2

Query: 317 GTMIALSAPD**ALI*PLNHQFFSLSALRRQPTVAHYHHLSLAVSHQPIPH*HRLLSLNH 496
           G  +A SA D      PL+H     S     P   H+HHL+  +   P  H H    L  
Sbjct: 393 GGTLASSARDVGVGYEPLHHASHLASHHHSHPHTHHHHHLAAGLHAPPYSHTHHQQQLQQ 452

Query: 497 QPIAGHYHRFLSLDHQPITHLRLSLSRPPATHHRRL 604
           Q    H+H      H P + L L   + P  H R++
Sbjct: 453 QQQQHHHHH-----HLPYSKLDLDYPKLPQEHKRQV 483


>tr|B6MYU8|B6MYU8_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_88479 PE=4 SV=1
          Length = 525

 Score = 36.6 bits (83), Expect = 1.4
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +2

Query: 422 HYHHLSLAVSHQPIPH*HRLLSLNHQPIAGHYHRFLSLDHQPITH 556
           ++ H  +   HQP+ H H+ ++  HQP+  H H+ ++  HQP+ H
Sbjct: 215 NHGHQPVNHGHQPVNHGHQPVNQGHQPV-NHGHQPVNHGHQPVNH 258



 Score = 36.6 bits (83), Expect = 1.4
 Identities = 20/64 (31%), Positives = 35/64 (54%)
 Frame = +2

Query: 365 PLNHQFFSLSALRRQPTVAHYHHLSLAVSHQPIPH*HRLLSLNHQPIAGHYHRFLSLDHQ 544
           P+NH    ++    QP   ++ H  +   HQP+ H H+ ++  HQP+  H H+ ++  HQ
Sbjct: 227 PVNHGHQPVNQ-GHQPV--NHGHQPVNHGHQPVNHGHQPVNHGHQPV-NHGHQPVNHGHQ 282

Query: 545 PITH 556
           P+ H
Sbjct: 283 PVNH 286


>tr|A7SDS3|A7SDS3_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g24399 PE=4 SV=1
          Length = 115

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +2

Query: 431 HLSLAVSHQPIPH*HRLLSLNHQPIAGHYHRFLSLDHQPITHLRLSLSRPPATHHRRLRS 610
           +L+L V+H P+ H +R  S     +  H HR+L+L    +TH       PP +H  R +S
Sbjct: 9   YLTLTVTHPPVSHTYRHTSAGIPHLPSHIHRYLTL---TVTH-------PPVSHTYRHKS 58

Query: 611 SNL 619
           + +
Sbjct: 59  AGI 61


>tr|Q4UH86|Q4UH86_THEAN Putative uncharacterized protein
           OS=Theileria annulata GN=TA20355 PE=4 SV=1
          Length = 268

 Score = 35.8 bits (81), Expect = 2.5
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = +2

Query: 410 PTVAHYHHLSLAVSHQPIPH*HRLLSLNHQPIAGHYHRFLSLDHQPITHLRLSLSRPPAT 589
           P+  H H +S ++SH  + H HR+ SL+H  +  H H+  SL H  +   R+S       
Sbjct: 58  PSTLHTHKIS-SLSHTTL-HTHRISSLSHTTL--HTHKISSLSHTTLHTHRISSLSHTTL 113

Query: 590 HHRRLRSSNL 619
           H  R+ S +L
Sbjct: 114 HTHRISSLSL 123


>tr|A1YL96|A1YL96_GOSHI Proline-rich protein OS=Gossypium hirsutum
           GN=PRPL PE=2 SV=1
          Length = 164

 Score = 35.4 bits (80), Expect = 3.2
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +2

Query: 368 LNHQFFSLSALRRQPTVAHYHHL----SLAVSHQPIPH*H-RLLSLNHQPIAGHYHRFLS 532
           L+HQF  L   R       Y +L    SL++SHQ I H   R LS NHQ +     + L+
Sbjct: 18  LSHQFIHLQRKRSLNPNHQYMNLQRRKSLSLSHQFIHHQRKRSLSPNHQYMNPQRRKSLN 77

Query: 533 LDHQPITHLR 562
           L HQ I H R
Sbjct: 78  LSHQFIHHQR 87


>tr|B6PPL3|B6PPL3_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_254484 PE=4 SV=1
          Length = 174

 Score = 35.4 bits (80), Expect = 3.2
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
 Frame = +2

Query: 386 SLSALRRQPTVAHYHHLSLAVSHQPIPH*HRLLSLNHQPIAGHYHRFLSLDHQPITHLRL 565
           S+  +   P  A + H+ L+ +H P+ H H   +      A   H  LS  H P+ H+ L
Sbjct: 76  SVQPMHLSPAHALFQHMHLSPAHAPVQHMHLSSTCTCPAHAPVQHMHLSPAHAPVQHMHL 135

Query: 566 SLSRPPATH------HRRLRSSNLSTEY 631
             +  P +       H  L S+  S ++
Sbjct: 136 CPAHAPLSSTCTCPAHAPLSSTRTSIQH 163


>tr|A7T4B6|A7T4B6_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g4289 PE=4 SV=1
          Length = 156

 Score = 35.0 bits (79), Expect = 4.2
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
 Frame = +2

Query: 353 ALI*PLNHQFFSLSALRRQPTVAHYHHLSLAVSHQPI--PH*HRLLSLNHQPI------- 505
           +L  P +H  FS++          YHH   +++H  +  P+ H L S+NH  +       
Sbjct: 10  SLFLPYHHSLFSIN---HYSLFLPYHHSLFSINHYSLFLPYHHSLFSINHYSLFLPYHHS 66

Query: 506 ---AGHYHRFLSLDHQ--PITHLRLSLSRPPATHHRRLRSSN 616
                HY  FL   H   PI H  L L      +H  L S N
Sbjct: 67  LFSINHYSLFLPYHHSLFPINHYSLFL-----PYHHSLFSIN 103


>tr|A7T4B5|A7T4B5_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g2690 PE=4 SV=1
          Length = 156

 Score = 35.0 bits (79), Expect = 4.2
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +2

Query: 353 ALI*PLNHQFFSLSALRRQPTVAHYHHLSLAVSHQPI--PH*HRLLSLNHQPIAGHYHRF 526
           +L  P +H  FS++     P    YHH   +++H  +  P+ H L S+NH  +   YH  
Sbjct: 58  SLFLPYHHSLFSINHYSLFPP---YHHSLFSINHYSLFLPYHHSLFSINHYSLFLPYHHS 114

Query: 527 L-SLDH 541
           L S++H
Sbjct: 115 LFSINH 120



 Score = 34.3 bits (77), Expect = 7.1
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 353 ALI*PLNHQFFSLSALRRQPTVAHYHHLSLAVSHQPI--PH*HRLLSLNHQPIAGHYHRF 526
           +L  P +H  FS++          YHH   +++H  +  P+ H L S+NH  +   YH  
Sbjct: 26  SLFLPYHHSLFSIN---HYSLFLPYHHSLFSINHYSLFLPYHHSLFSINHYSLFPPYHHS 82

Query: 527 L-SLDH 541
           L S++H
Sbjct: 83  LFSINH 88


>tr|Q4SWU2|Q4SWU2_TETNG Chromosome undetermined SCAF13514, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00011295001 PE=3 SV=1
          Length = 468

 Score = 34.7 bits (78), Expect = 5.5
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
 Frame = +2

Query: 368 LNHQFFSLSALRRQP----TVAHYHHLSLAVSHQPIPH*HRLLSLNHQPIAGHYHRFLSL 535
           ++HQ  S   + +QP    +V+H      +VSHQ + H     S++ QP++       S+
Sbjct: 372 VSHQSVSHQPVSQQPVSHQSVSHQSVSQQSVSHQSVSH----QSVSQQPVSHQSVSHQSV 427

Query: 536 DHQPITHLRL---SLSRPPATH 592
             QP++H  +   S+S+ P +H
Sbjct: 428 SQQPVSHQSVSHQSVSQQPVSH 449


>tr|A7SL78|A7SL78_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g214011 PE=4 SV=1
          Length = 463

 Score = 34.7 bits (78), Expect = 5.5
 Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
 Frame = +2

Query: 395 ALRRQPTVAHYHHLSLAVSHQPIPH*HRLLSLNHQPIAGHYHRFLSLDHQPITHLRLSLS 574
           A+R +P    Y    +AV ++PI   +R +++ ++PIA HY R +++ ++PI      ++
Sbjct: 58  AVRYRPIAVRYR--PIAVRYRPIAVRYRPIAVRYRPIAVHY-RPIAVRYRPIAVRYRPIA 114

Query: 575 ---RPPATHHRRLRSSNLSTEY 631
              RP A  HR + +  ++  Y
Sbjct: 115 VRYRPIAVRHRPIATRPIAVRY 136