DK961366 |
Clone id |
TST39A01NGRL0009_O17 |
Library |
TST39 |
Length |
660 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_O17. 5' end sequence. |
Accession |
DK961366 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL593Contig1 |
Sequence |
CCTTCGTCTGCTAAGTCAGGAGCTTCTTCGGCTTTGGGTGCTCTTCCTCTCTCTCGCGCT ACCTTCTGTGCATGAGCGCGAGAGAGACTTCTGTGTAGTCCATGATGAGGAAGGCAGGTA GCCATCTCAGCAAGCTCGCCATTCGTAGCATTGCTTCCCAGCAGGTTACCCTCAACCCTT CTGTGTTTTCCAGCGCCTCCCGCCGAGGCTACGCTGACGACGCGTCGCTGAAGAAGACGC CCCTCTTTGATTATCATGTCGAAAATGGGGGTAAGATGGTACCTTTTGCCGGCTGGAGCA TGCCTCTCCAATACAAGGACTCCATCATGGACTCTACAACAAACTGCAGAGAGAATGGCA GCCTTTTTGATGTGTCGCATATGTGCGGTCTAAGCCTCAAAGGAAAGGATAGCATTGCTT TTCTTGAGAAGCTTGTTGTTGGCGATATCACTGCTCTAGCTCCAGGCACAGGCACTCTCT CTGTCTTCACAAATGAAAAGGGGGGCATTATCGACGACACTGTCATAACAAAAGTGAAGG ATGATCACATTTACCTTGTGGTGAATGCTGGTTGTAGAGACAAAGATCTTGAACACATGG AGTCGCATCTGAAGCCCTTTCAAGCTTCCGGCAAGGATGTGCAATGGCATATCCATGACG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P93256 |
Definition |
sp|P93256|GCST_MESCR Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum |
Align length |
154 |
Score (bit) |
265.0 |
E-value |
2.0e-70 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961366|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0009_O17, 5' (660 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P93256|GCST_MESCR Aminomethyltransferase, mitochondrial OS=Me... 265 2e-70 sp|O23936|GCST_FLATR Aminomethyltransferase, mitochondrial OS=Fl... 264 4e-70 sp|O49849|GCST_FLAAN Aminomethyltransferase, mitochondrial OS=Fl... 261 3e-69 sp|P54260|GCST_SOLTU Aminomethyltransferase, mitochondrial OS=So... 260 4e-69 sp|P49363|GCST_FLAPR Aminomethyltransferase, mitochondrial OS=Fl... 258 2e-68 sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial OS=Pisu... 256 6e-68 sp|O65396|GCST_ARATH Aminomethyltransferase, mitochondrial OS=Ar... 256 1e-67 sp|Q8CFA2|GCST_MOUSE Aminomethyltransferase, mitochondrial OS=Mu... 162 2e-39 sp|P48728|GCST_HUMAN Aminomethyltransferase, mitochondrial OS=Ho... 160 7e-39 sp|P25285|GCST_BOVIN Aminomethyltransferase, mitochondrial OS=Bo... 159 1e-38 sp|Q9TSZ7|GCST_CANFA Aminomethyltransferase, mitochondrial OS=Ca... 155 1e-37 sp|P28337|GCST_CHICK Aminomethyltransferase, mitochondrial OS=Ga... 148 2e-35 sp|Q54DD3|GCST_DICDI Aminomethyltransferase, mitochondrial OS=Di... 148 3e-35 sp|P48015|GCST_YEAST Aminomethyltransferase, mitochondrial OS=Sa... 129 2e-29 sp|O14110|GCST_SCHPO Probable aminomethyltransferase, mitochondr... 125 2e-28 sp|Q9WY54|GCST_THEMA Aminomethyltransferase OS=Thermotoga mariti... 118 2e-26 sp|A5IKL0|GCST_THEP1 Aminomethyltransferase OS=Thermotoga petrop... 115 2e-25 sp|Q666R5|GCST_YERPS Aminomethyltransferase OS=Yersinia pseudotu... 106 1e-22 sp|A4TIA5|GCST_YERPP Aminomethyltransferase OS=Yersinia pestis (... 106 1e-22 sp|Q1CEZ7|GCST_YERPN Aminomethyltransferase OS=Yersinia pestis b... 106 1e-22 sp|Q8ZHI6|GCST_YERPE Aminomethyltransferase OS=Yersinia pestis G... 106 1e-22 sp|Q1CB44|GCST_YERPA Aminomethyltransferase OS=Yersinia pestis b... 106 1e-22 sp|A7FF19|GCST_YERP3 Aminomethyltransferase OS=Yersinia pseudotu... 106 1e-22 sp|Q24TH3|GCST_DESHY Aminomethyltransferase OS=Desulfitobacteriu... 105 2e-22 sp|Q65HF9|GCST_BACLD Aminomethyltransferase OS=Bacillus lichenif... 104 4e-22 sp|P54378|GCST_BACSU Aminomethyltransferase OS=Bacillus subtilis... 104 5e-22 sp|Q8CSF4|GCST_STAES Aminomethyltransferase OS=Staphylococcus ep... 103 6e-22 sp|Q5HP12|GCST_STAEQ Aminomethyltransferase OS=Staphylococcus ep... 103 6e-22 sp|A6TMY6|GCST_ALKMQ Aminomethyltransferase OS=Alkaliphilus meta... 103 6e-22 sp|Q4L6N7|GCST_STAHJ Aminomethyltransferase OS=Staphylococcus ha... 103 8e-22
>sp|P93256|GCST_MESCR Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1 Length = 408
Score = 265 bits (676), Expect = 2e-70 Identities = 124/154 (80%), Positives = 135/154 (87%) Frame = +3
Query: 198 SRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVS 377 +RR +A +A LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDV+ Sbjct: 26 ARRCFASEADLKKTALYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVA 85
Query: 378 HMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYL 557 HMCGLSLKGKD I FLEKLVVGDI LAPGTGTLSV TNEKGG IDDTVITKV DDHIYL Sbjct: 86 HMCGLSLKGKDCIPFLEKLVVGDIAGLAPGTGTLSVLTNEKGGAIDDTVITKVTDDHIYL 145
Query: 558 VVNAGCRDKDLEHMESHLKPFQASGKDVQWHIHD 659 VVNAGCR+KDL H+E H+K F+A G DV WHIHD Sbjct: 146 VVNAGCREKDLAHIEEHMKAFKAKGGDVSWHIHD 179
>sp|O23936|GCST_FLATR Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1 Length = 407
Score = 264 bits (674), Expect = 4e-70 Identities = 122/153 (79%), Positives = 135/153 (88%) Frame = +3
Query: 201 RRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSH 380 RR YA +A LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIM+ST NCRENGSLFDVSH Sbjct: 26 RRWYASEADLKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCRENGSLFDVSH 85
Query: 381 MCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLV 560 MCGLSLKGKD +AFLEKLVV D+ LAPGTG+L+VFTNEKGG IDD+VITKV DDHIYLV Sbjct: 86 MCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLV 145
Query: 561 VNAGCRDKDLEHMESHLKPFQASGKDVQWHIHD 659 VNAGCRDKDL H+E H+K F+A G DV WHIHD Sbjct: 146 VNAGCRDKDLAHIEQHMKAFKAKGGDVSWHIHD 178
>sp|O49849|GCST_FLAAN Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1 Length = 407
Score = 261 bits (666), Expect = 3e-69 Identities = 121/153 (79%), Positives = 135/153 (88%) Frame = +3
Query: 201 RRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSH 380 RR YA +A LKKT L+D+HV +GGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDVSH Sbjct: 26 RRCYASEADLKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVSH 85
Query: 381 MCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLV 560 MCGLSLKGKD +AFLEKLVV D+ LAPGTG+L+VFTNEKGG IDD+VITKV DDHIYLV Sbjct: 86 MCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLV 145
Query: 561 VNAGCRDKDLEHMESHLKPFQASGKDVQWHIHD 659 VNAGCRDKDL H+E H+K F+A G DV WHI+D Sbjct: 146 VNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIYD 178
>sp|P54260|GCST_SOLTU Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1 Length = 406
Score = 260 bits (665), Expect = 4e-69 Identities = 119/153 (77%), Positives = 135/153 (88%) Frame = +3
Query: 201 RRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSH 380 RR +A DA LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDVSH Sbjct: 26 RRCFASDADLKKTVLYDFHVVNGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVSH 85
Query: 381 MCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLV 560 MCGLSLKGKD+I FLEKLV+ D+ LAPGTG+L+VFTNEKGG IDD+V+TKV +DHIYLV Sbjct: 86 MCGLSLKGKDTIPFLEKLVIADVAGLAPGTGSLTVFTNEKGGAIDDSVVTKVTNDHIYLV 145
Query: 561 VNAGCRDKDLEHMESHLKPFQASGKDVQWHIHD 659 VNAGCRDKDL H+E H+K F++ G DV WHIHD Sbjct: 146 VNAGCRDKDLAHIEEHMKSFKSKGGDVSWHIHD 178
>sp|P49363|GCST_FLAPR Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1 Length = 407
Score = 258 bits (659), Expect = 2e-68 Identities = 121/163 (74%), Positives = 137/163 (84%) Frame = +3
Query: 171 LNPSVFSSASRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCR 350 L S + +RR YA +A LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIM+ST NCR Sbjct: 16 LGQSDKKTIARRCYASEADLKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCR 75
Query: 351 ENGSLFDVSHMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVIT 530 ENGSLFDVSHMCGLSLKGKD + FLEKLVV D+ L PGTG+L+VFTNEKGG IDD+VIT Sbjct: 76 ENGSLFDVSHMCGLSLKGKDCVPFLEKLVVADVAGLRPGTGSLTVFTNEKGGAIDDSVIT 135
Query: 531 KVKDDHIYLVVNAGCRDKDLEHMESHLKPFQASGKDVQWHIHD 659 KV DDHIYLVVNAGCRDKDL H+E H+K F+A G DV WHI+D Sbjct: 136 KVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIYD 178
>sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2 Length = 408
Score = 256 bits (655), Expect = 6e-68 Identities = 117/156 (75%), Positives = 137/156 (87%) Frame = +3
Query: 192 SASRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFD 371 + +RR +A ++ LKKT L+D+HV +GGKMVPFAGWSMP+QYKDSIMDST NCR+NGSLFD Sbjct: 24 AVARRCFATESELKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFD 83
Query: 372 VSHMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHI 551 VSHMCGLSLKGKD ++FLEKLV+ D+ ALA GTGTL+VFTNEKGG IDD+VITKV DDH+ Sbjct: 84 VSHMCGLSLKGKDVVSFLEKLVIADVAALAHGTGTLTVFTNEKGGAIDDSVITKVTDDHL 143
Query: 552 YLVVNAGCRDKDLEHMESHLKPFQASGKDVQWHIHD 659 YLVVNAGCRDKDL H+E H+K F+A G DV WHIHD Sbjct: 144 YLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIHD 179
>sp|O65396|GCST_ARATH Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1 Length = 408
Score = 256 bits (653), Expect = 1e-67 Identities = 117/154 (75%), Positives = 134/154 (87%) Frame = +3
Query: 198 SRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVS 377 SRR +A +A LKKT L+D+HV +GGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDV+ Sbjct: 26 SRRYFASEADLKKTALYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVA 85
Query: 378 HMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYL 557 HMCGLSLKGKD + FLE LVV D+ LAPGTG+L+VFTNEKGG IDD+VITKV D+HIYL Sbjct: 86 HMCGLSLKGKDCVPFLETLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDEHIYL 145
Query: 558 VVNAGCRDKDLEHMESHLKPFQASGKDVQWHIHD 659 VVNAGCRDKDL H+E H+K F++ G DV WHIHD Sbjct: 146 VVNAGCRDKDLAHIEEHMKAFKSKGGDVSWHIHD 179
>sp|Q8CFA2|GCST_MOUSE Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1 Length = 403
Score = 162 bits (409), Expect = 2e-39 Identities = 75/138 (54%), Positives = 100/138 (72%) Frame = +3
Query: 228 LKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSHMCGLSLKGK 407 L++TPL+D+H+ +GGKMV FAGWS+P+QY+DS +DS + R + SLFDVSHM + G Sbjct: 33 LRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVDSHLHTRRHCSLFDVSHMLQTKIFGC 92
Query: 408 DSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLVVNAGCRDKD 587 D + LE +VVGDI L P GTLS+FTNE GGI+DD +++ + H+Y+V NAGCRDKD Sbjct: 93 DRVKLLESVVVGDIAELRPNQGTLSLFTNEAGGILDDLIVSNTSEGHLYVVSNAGCRDKD 152
Query: 588 LEHMESHLKPFQASGKDV 641 L M+ +K FQ G DV Sbjct: 153 LALMQDKVKEFQNRGLDV 170
>sp|P48728|GCST_HUMAN Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1 Length = 403
Score = 160 bits (404), Expect = 7e-39 Identities = 73/144 (50%), Positives = 101/144 (70%) Frame = +3
Query: 228 LKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSHMCGLSLKGK 407 L++TPL+D+H+ +GGKMV FAGWS+P+QY+DS DS + R++ SLFDVSHM + G Sbjct: 33 LRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGS 92
Query: 408 DSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLVVNAGCRDKD 587 D + +E LVVGDI L P GTLS+FTNE GGI+DD ++T + H+Y+V NAGC +KD Sbjct: 93 DRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKD 152
Query: 588 LEHMESHLKPFQASGKDVQWHIHD 659 L M+ ++ Q G+DV + D Sbjct: 153 LALMQDKVRELQNQGRDVGLEVLD 176
>sp|P25285|GCST_BOVIN Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1 Length = 397
Score = 159 bits (402), Expect = 1e-38 Identities = 73/144 (50%), Positives = 101/144 (70%) Frame = +3
Query: 228 LKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSHMCGLSLKGK 407 L +TPL+D+H+ +GGKMV FAGWS+P+QY+DS ++S + R++ SLFDVSHM + G Sbjct: 27 LHRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVNSHLHTRQHCSLFDVSHMLQTKIFGC 86
Query: 408 DSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLVVNAGCRDKD 587 D + +E LVVGDI L P GTLS+FTNE GGI+DD ++T + H+Y+V NAGCR+KD Sbjct: 87 DRVKLMESLVVGDIAELKPNQGTLSLFTNEAGGILDDLIVTSASEGHLYVVSNAGCREKD 146
Query: 588 LEHMESHLKPFQASGKDVQWHIHD 659 L M+ ++ Q G DV + D Sbjct: 147 LTLMQDKVRELQNKGSDVALEVMD 170
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SLK1 |
Definition |
tr|A9SLK1|A9SLK1_PHYPA Aminomethyltransferase OS=Physcomitrella patens subsp. patens |
Align length |
186 |
Score (bit) |
268.0 |
E-value |
2.0e-70 |
Report |
|