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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961367
Clone id TST39A01NGRL0009_O18
Library
Length 647
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_O18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATACATATCTTATCTCTCTCATTTTTTGTGTGTACAGCTCGTAACCTTATCTTCTCCGTC
TCTTCTCTACACTTCTCCATCCCCCTGAAGCCATGAGCATCCGTGACTCTGTCCGCTTCC
GTGTCGACTCCACAAATGGTATCAGAGCACTAGCTTTGTCTTGGGTAAAAAGCTCCTGGA
AGGAAGAGTTTGAGCAGACAGGAAACAAAGGGGGAGGCTCTGAGAGAGTTGGAAGAACAA
CCTTGTTGATCTCACTCTCTGCGGGGTTGTCTTATTTCAGCTCCGACGGCTGTTGGTGGC
ACTACCACAACAATGCCCATGTAAGGGCGGTTCAACCATCAATGCAGTGCCTAAGAGGGC
AGCACTACCGACAAACAAGAGAAGGCCGGCTAGGCTCAGGAGGCTGTCAGGGGCTCTGGG
AGTAGACCAAGGGCACGATTGCAGGAGAAGGCTCGTTCATGTAGGAGAAGGCAACAACAA
CACACAAGGAGTGGGGGTTTTGAGAGCACTGCAGAGGGGCGCCAGGCCTTGCACATGGCA
GCTACATAAGCCTCAAGGGATCTCTACAGTAAGCTTGCATGACGTCATAAGGTAGTACAT
GAGACAGGGGTCCATGCCTAGACCACGGATCAAGCTCGAGCCATGGT
■■Homology search results ■■ -
sp_hit_id Q5FVJ4
Definition sp|Q5FVJ4|RELL2_RAT RELT-like protein 2 OS=Rattus norvegicus
Align length 104
Score (bit) 32.3
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961367|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_O18, 5'
         (647 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5FVJ4|RELL2_RAT RELT-like protein 2 OS=Rattus norvegicus GN=...    32   2.2  
sp|Q924N4|S12A6_MOUSE Solute carrier family 12 member 6 OS=Mus m...    32   3.7  
sp|Q8NC24|RELL2_HUMAN RELT-like protein 2 OS=Homo sapiens GN=REL...    32   3.7  
sp|Q2NQN8|RL18_SODGM 50S ribosomal protein L18 OS=Sodalis glossi...    31   6.4  
sp|Q76I79|SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=...    30   8.3  
sp|Q8BRJ3|RELL2_MOUSE RELT-like protein 2 OS=Mus musculus GN=Rel...    30   8.3  
sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment) OS=C...    30   8.3  

>sp|Q5FVJ4|RELL2_RAT RELT-like protein 2 OS=Rattus norvegicus
           GN=Rell2 PE=2 SV=1
          Length = 302

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 32/104 (30%), Positives = 45/104 (43%)
 Frame = +3

Query: 213 GGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREGRL 392
           G SE  G T  L S+ A  S    DG   H+H   H+ +  P + C R +     R+GR 
Sbjct: 94  GDSEGEG-TVQLSSVDATSSL--QDGAPSHHHT-VHLGSAAPCIHCSRSKRPPLVRQGRS 149

Query: 393 GSGGCQGLWE*TKGTIAGEGSFM*EKATTTHKEWGF*EHCRGAP 524
             G  +G     + T+   G F   + T   K +G  EH  G+P
Sbjct: 150 KEG--KGRPRPGETTVFSVGRF---RVTHIEKRYGLHEHRDGSP 188


>sp|Q924N4|S12A6_MOUSE Solute carrier family 12 member 6 OS=Mus
           musculus GN=Slc12a6 PE=1 SV=1
          Length = 1150

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
 Frame = +3

Query: 75  LHPPEAMSIRDSVRFRV------------DSTNGIRALALSWVKSSWKEEFEQTGNKGGG 218
           +HPPEA +   SVRF V            D++  + + + S V+ S +E   +T      
Sbjct: 1   MHPPEATTKMSSVRFMVTPTKIDDIPGLSDTSPDLSSRSSSRVRFSSRESVPETSRSEPM 60

Query: 219 SERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREG 386
           SE  G TT L +++      SSD       +N       PS   + G+H +   +G
Sbjct: 61  SELSGATTSLATVALDP---SSDRT-----SNPQDVTEDPSQNSITGEHSQLLDDG 108


>sp|Q8NC24|RELL2_HUMAN RELT-like protein 2 OS=Homo sapiens GN=RELL2
           PE=1 SV=1
          Length = 303

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 32/104 (30%), Positives = 44/104 (42%)
 Frame = +3

Query: 213 GGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREGRL 392
           G SE  G T  L S+ A  S    DG   H+H   H+ +  P + C R +     R+GR 
Sbjct: 94  GDSEGEG-TVQLSSVDATSSL--QDGAPSHHHT-VHLGSAAPCLHCSRSKRPPLVRQGRS 149

Query: 393 GSGGCQGLWE*TKGTIAGEGSFM*EKATTTHKEWGF*EHCRGAP 524
             G  +     T  T+   G F   + T   K +G  EH  G+P
Sbjct: 150 KEGKSRPRTGET--TVFSVGRF---RVTHIEKRYGLHEHRDGSP 188


>sp|Q2NQN8|RL18_SODGM 50S ribosomal protein L18 OS=Sodalis
           glossinidius (strain morsitans) GN=rplR PE=3 SV=1
          Length = 117

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 120 RVDSTNGIRAL-ALSWVKSSWKEEFEQTGNKGGGSERVGRTTLLISLSAGLSYFSSDGCW 296
           +V + NG   L A S V+ +  E+ + TGNK   +  VG+T  + +L  G+   S D   
Sbjct: 38  QVIAPNGSEVLVAASTVEKAIAEQLKGTGNKDAAAA-VGKTIAVRALEKGIKDVSFDRSG 96

Query: 297 WHYHNNAHVRA 329
           + YH      A
Sbjct: 97  FQYHGRVQALA 107


>sp|Q76I79|SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=Mus
           musculus GN=Ssh1 PE=1 SV=1
          Length = 1042

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
 Frame = +2

Query: 179 EGRV*ADRKQRGRL*ESWKNNLVDLTLCGVVLFQLRRLLVALPQQCPCKGGSTINAVPKR 358
           EG + A +++  +L   W+    D T+     F    L  AL  Q PC   +T   +P R
Sbjct: 444 EGILDASKQRHNKL---WRQQPTDDTIAEPSEFLPETLDGALDAQLPCLDDTTHPGLP-R 499

Query: 359 AALPTNKRRPARLRRLSGALGVDQGHDCRRRLVHVGE-------GNNNTQGVGVLRAL-- 511
           +  P     P   RRLS  L +   HD    LVH+ +           +Q V V + +  
Sbjct: 500 SLAPGGPALPCCFRRLSDPLLLPH-HDETGGLVHLEDLEKDALLEEEESQPVEVHKLVQH 558

Query: 512 -QRGARPC 532
            Q GAR C
Sbjct: 559 PQEGARLC 566


>sp|Q8BRJ3|RELL2_MOUSE RELT-like protein 2 OS=Mus musculus GN=Rell2
           PE=2 SV=1
          Length = 303

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 31/104 (29%), Positives = 44/104 (42%)
 Frame = +3

Query: 213 GGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREGRL 392
           G SE  G T  L S+ A  S    DG   H+H   H+ +  P + C R +     R+GR 
Sbjct: 94  GDSEGEG-TVQLSSVDATSSL--QDGAPSHHHT-VHLGSAAPCIHCSRSKRPPLVRQGRS 149

Query: 393 GSGGCQGLWE*TKGTIAGEGSFM*EKATTTHKEWGF*EHCRGAP 524
             G  +      + T+   G F   + T   K +G  EH  G+P
Sbjct: 150 KEGKSRP--RPGETTVFSVGRF---RVTHIEKRYGLHEHRDGSP 188


>sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment)
           OS=Canis familiaris GN=CUX1 PE=2 SV=1
          Length = 975

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 403 AVRGSGSRPRARLQEKARSCRRRQQQHTRSGG 498
           A RG   RP AR + + R  RRR+++H R GG
Sbjct: 857 AARGPSRRPGARAKPRRR--RRRRRRHARGGG 886
tr_hit_id B3K5R8
Definition tr|B3K5R8|B3K5R8_9BACI Short-chain dehydrogenase/reductase SDR OS=Geobacillus sp. Y412MC10
Align length 112
Score (bit) 38.1
E-value 0.46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961367|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_O18, 5'
         (647 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3K5R8|B3K5R8_9BACI Short-chain dehydrogenase/reductase SDR O...    38   0.46 
tr|B5YLR2|B5YLR2_THAPS Predicted protein OS=Thalassiosira pseudo...    37   0.79 
tr|A6SS60|A6SS60_BOTFB Putative uncharacterized protein OS=Botry...    34   6.7  

>tr|B3K5R8|B3K5R8_9BACI Short-chain dehydrogenase/reductase SDR
           OS=Geobacillus sp. Y412MC10 GN=GYMC10DRAFT_1005 PE=4
           SV=1
          Length = 260

 Score = 38.1 bits (87), Expect = 0.46
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
 Frame = +2

Query: 224 ESWKNNLVDLTLCGVVLFQLRRLLVALPQQCPCKGGSTINAVPKRAALPTNKRRPARLRR 403
           ESW ++L DL L G + F       A+P      GG+ IN     A  P     P+ + R
Sbjct: 107 ESWASDL-DLKLFGAIRFSR----AAVPHLRNSGGGAIINVTTSWAKTPPASSMPSSVSR 161

Query: 404 LSG-ALGVDQGHDCRRRLVHVGEGNNNTQGVGVLRALQRGARPCTWQLHKPQ 556
            +G A+     HD  +  + V     NT  +G +R+ Q  AR   W+   P+
Sbjct: 162 AAGQAMTKAMSHDLAKDHIRV-----NTVCIGTIRSAQLEAR---WKRESPE 205


>tr|B5YLR2|B5YLR2_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPS_10869 PE=4 SV=1
          Length = 414

 Score = 37.4 bits (85), Expect = 0.79
 Identities = 25/65 (38%), Positives = 32/65 (49%)
 Frame = +3

Query: 66  STLLHPPEAMSIRDSVRFRVDSTNGIRALALSWVKSSWKEEFEQTGNKGGGSERVGRTTL 245
           ST  HPP     + S+R+R++S   + A      K  WK +FE   NK GGS   G T L
Sbjct: 2   STKSHPPSVSLGKPSLRYRLESYYSLIAPDAIADKEDWKRKFEIIYNKFGGSVE-GETRL 60

Query: 246 LISLS 260
              LS
Sbjct: 61  ANKLS 65


>tr|A6SS60|A6SS60_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_15625
           PE=4 SV=1
          Length = 371

 Score = 34.3 bits (77), Expect = 6.7
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
 Frame = -2

Query: 265 PAESEINKVVLPT----LSEPPP---LFPVCSNSSFQELFTQDKASALIPFVESTRK 116
           P +   NK V+P     L EPPP   LFP  ++SSF +   ++  +AL P +  TR+
Sbjct: 148 PKKQRSNKQVVPPIIIGLHEPPPQAALFPPIASSSFHDSHGRNTLNALAPKITETRE 204