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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961368
Clone id TST39A01NGRL0009_O19
Library
Length 595
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0009_O19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCTCACCTCGTCGCGATCGCCATATCTGCTGCACCTATCAGTTTTAGGGTTTTCTATCC
TTTTCTGCCTGCGCTCTCTTGCTCGATTTCAATGGCGTTTGGTCTTTGAACATCATACTC
CAGTCCCTTGATTCTACCCAATCATAAGCCTCAAACGATTGCCAGCAGCTGGCAGTATCG
CAGTTCAAATGGGTGCTCTGAAGAAGCACCATTTTGGCCCTAGTCGTGCTGATTCCGACT
GGCGTGCCTTATAGGCCCTGAAGAATTTTGCAGGCTTCGTCTTTGTTTGCAACAAGTCTA
CAATCCCGGATCTGGACCGAGGAATATTCGGTTTGCCAGGTAACTATGAGGACTCTGTTC
GGAACATTCATAGGGGAATGCCACTTTTTCTTTTTGACTACACTAGCCGCCGCCTGTACG
GTGTTTTTGAGGCTGCGAGTGATGGCGGCTACAACATTGATCCTTTCGCTTGGGAGAATG
ATGATCGTTCTAGGCGGAGACATGCCAATGCAGTTTCAAAGTACCCTGCACAGGTCAGGG
TGAGTATTCGAGCTGAGAGACCAGCTCTTGAGGAAGAGAGCTTTCGTTCTATTTT
■■Homology search results ■■ -
sp_hit_id P37707
Definition sp|P37707|B2_DAUCA B2 protein OS=Daucus carota
Align length 108
Score (bit) 105.0
E-value 2.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961368|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_O19, 5'
         (595 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P37707|B2_DAUCA B2 protein OS=Daucus carota PE=2 SV=1              105   2e-22
sp|Q03F16|COAD_PEDPA Phosphopantetheine adenylyltransferase OS=P...    33   1.4  
sp|P0A9L2|SLYD_SHIFL FKBP-type peptidyl-prolyl cis-trans isomera...    30   9.2  
sp|P0A9K9|SLYD_ECOLI FKBP-type peptidyl-prolyl cis-trans isomera...    30   9.2  
sp|P0A9L0|SLYD_ECOL6 FKBP-type peptidyl-prolyl cis-trans isomera...    30   9.2  
sp|P0A9L1|SLYD_ECO57 FKBP-type peptidyl-prolyl cis-trans isomera...    30   9.2  

>sp|P37707|B2_DAUCA B2 protein OS=Daucus carota PE=2 SV=1
          Length = 207

 Score =  105 bits (262), Expect = 2e-22
 Identities = 56/108 (51%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
 Frame = +3

Query: 273 GFVFVCNKSTIPD-LDRGIFGLPGNYEDSVRNIHRGMPLFLFDYTSRRLYGVFEAASDGG 449
           G++FVCN  T+ + L R +FGLP  Y DSVR I  G+PLFL++Y++ +L+GVFEAAS GG
Sbjct: 76  GYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGVFEAASFGG 135

Query: 450 YNIDPFAWENDDRSRRRHANAVSKYPAQVRVSIRAERPALEEESFRSI 593
            NIDP AWE+      +     S++PAQVRV  R     LEE+SFR I
Sbjct: 136 TNIDPTAWED------KKNQGESRFPAQVRVMTRKICEPLEEDSFRPI 177


>sp|Q03F16|COAD_PEDPA Phosphopantetheine adenylyltransferase
           OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
           GN=coaD PE=3 SV=1
          Length = 158

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
 Frame = -3

Query: 587 TKALFLKSWSLSSNTHPDLCR-------VL*NCIGMSPPRTIIILPSERINVVAAITRSL 429
           TKAL++ S+   +N H D+ +        L   + ++  ++ +  P ER+N++  +TR L
Sbjct: 2   TKALYVGSFDPITNGHLDIIKRAAKIFDELTVVVAINTNKSALFTPQERVNLITQVTRDL 61

Query: 428 KN 423
           +N
Sbjct: 62  EN 63


>sp|P0A9L2|SLYD_SHIFL FKBP-type peptidyl-prolyl cis-trans isomerase
           slyD OS=Shigella flexneri GN=slyD PE=3 SV=1
          Length = 196

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -2

Query: 510 HWHVSA*NDHHSPKRKDQCCSRHHSQPQKHRTGGG*CSQK 391
           H HV   +DHH     D CC  H         G G C  K
Sbjct: 149 HGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHGGEGCCGGK 188


>sp|P0A9K9|SLYD_ECOLI FKBP-type peptidyl-prolyl cis-trans isomerase
           slyD OS=Escherichia coli (strain K12) GN=slyD PE=1 SV=1
          Length = 196

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -2

Query: 510 HWHVSA*NDHHSPKRKDQCCSRHHSQPQKHRTGGG*CSQK 391
           H HV   +DHH     D CC  H         G G C  K
Sbjct: 149 HGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHGGEGCCGGK 188


>sp|P0A9L0|SLYD_ECOL6 FKBP-type peptidyl-prolyl cis-trans isomerase
           slyD OS=Escherichia coli O6 GN=slyD PE=3 SV=1
          Length = 196

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -2

Query: 510 HWHVSA*NDHHSPKRKDQCCSRHHSQPQKHRTGGG*CSQK 391
           H HV   +DHH     D CC  H         G G C  K
Sbjct: 149 HGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHGGEGCCGGK 188


>sp|P0A9L1|SLYD_ECO57 FKBP-type peptidyl-prolyl cis-trans isomerase
           slyD OS=Escherichia coli O157:H7 GN=slyD PE=3 SV=1
          Length = 196

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -2

Query: 510 HWHVSA*NDHHSPKRKDQCCSRHHSQPQKHRTGGG*CSQK 391
           H HV   +DHH     D CC  H         G G C  K
Sbjct: 149 HGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHGGEGCCGGK 188
tr_hit_id A9T5I7
Definition tr|A9T5I7|A9T5I7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 108
Score (bit) 112.0
E-value 2.0e-23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961368|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0009_O19, 5'
         (595 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T5I7|A9T5I7_PHYPA Predicted protein OS=Physcomitrella paten...   112   2e-23
tr|A9RF70|A9RF70_PHYPA Predicted protein OS=Physcomitrella paten...   112   2e-23
tr|A9REG4|A9REG4_PHYPA Predicted protein OS=Physcomitrella paten...   112   2e-23
tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medic...   111   3e-23
tr|B8A073|B8A073_MAIZE Putative uncharacterized protein OS=Zea m...   111   4e-23
tr|B6T8N2|B6T8N2_MAIZE Gda-1 OS=Zea mays PE=2 SV=1                    111   4e-23
tr|B6TDG4|B6TDG4_MAIZE Gda-1 OS=Zea mays PE=2 SV=1                    110   5e-23
tr|B4FUR5|B4FUR5_MAIZE Putative uncharacterized protein OS=Zea m...   110   5e-23
tr|Q6L4U7|Q6L4U7_ORYSJ Os05g0498700 protein OS=Oryza sativa subs...   108   2e-22
tr|B8LQZ7|B8LQZ7_PICSI Putative uncharacterized protein OS=Picea...   108   2e-22
tr|B8AZL0|B8AZL0_ORYSI Putative uncharacterized protein OS=Oryza...   108   2e-22
tr|A3B5I3|A3B5I3_ORYSJ Putative uncharacterized protein OS=Oryza...   108   2e-22
tr|Q8L6E9|Q8L6E9_PEA GDA2 protein OS=Pisum sativum GN=gda2 PE=2 ...   108   3e-22
tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citru...   107   5e-22
tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solan...   106   9e-22
tr|B7ZYQ7|B7ZYQ7_MAIZE Putative uncharacterized protein OS=Zea m...   106   1e-21
tr|B6TMX1|B6TMX1_MAIZE N-rich protein OS=Zea mays PE=2 SV=1           106   1e-21
tr|B4F858|B4F858_MAIZE Putative uncharacterized protein OS=Zea m...   106   1e-21
tr|A9PHN9|A9PHN9_POPTR Putative uncharacterized protein OS=Popul...   106   1e-21
tr|Q5JK83|Q5JK83_ORYSJ cDNA clone:001-207-H09, full insert seque...   105   2e-21
tr|Q5JK82|Q5JK82_ORYSJ Putative GDA2 protein (Os01g0550300 prote...   105   2e-21
tr|B8AA12|B8AA12_ORYSI Putative uncharacterized protein OS=Oryza...   105   2e-21
tr|Q9LSC7|Q9LSC7_ARATH Similarity to unknown protein (AT3g27090/...   105   3e-21
tr|Q8LBT1|Q8LBT1_ARATH Gda-1, putative OS=Arabidopsis thaliana P...   105   3e-21
tr|Q5JZR1|Q5JZR1_SOYBN N-rich protein OS=Glycine max GN=nrp PE=2...   104   4e-21
tr|Q5TKG4|Q5TKG4_ORYSJ Os05g0594100 protein OS=Oryza sativa subs...   103   6e-21
tr|A2Y853|A2Y853_ORYSI Putative uncharacterized protein OS=Oryza...   103   6e-21
tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea...   102   1e-20
tr|A7Q7R8|A7Q7R8_VITVI Chromosome chr18 scaffold_61, whole genom...   102   1e-20
tr|A5AK97|A5AK97_VITVI Putative uncharacterized protein OS=Vitis...   102   1e-20

>tr|A9T5I7|A9T5I7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_191832 PE=4 SV=1
          Length = 177

 Score =  112 bits (280), Expect = 2e-23
 Identities = 56/108 (51%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
 Frame = +3

Query: 273 GFVFVCNKSTIP-DLDRGIFGLPGNYEDSVRNIHRGMPLFLFDYTSRRLYGVFEAASDGG 449
           G++FVCN  T+  DL R +FGLP  Y DSVR I  G+PLFL++YT+ +L+G+FEAAS GG
Sbjct: 45  GYIFVCNNDTMQEDLKRQLFGLPQRYRDSVRTIQPGLPLFLYNYTTHQLHGIFEAASFGG 104

Query: 450 YNIDPFAWENDDRSRRRHANAVSKYPAQVRVSIRAERPALEEESFRSI 593
            NIDP AWE+      +     S++PAQVR  IR +   LEE+SFR +
Sbjct: 105 SNIDPTAWED------KKCRGESRFPAQVRTRIRKQCKPLEEDSFRPV 146


>tr|A9RF70|A9RF70_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_113222 PE=4 SV=1
          Length = 174

 Score =  112 bits (280), Expect = 2e-23
 Identities = 55/108 (50%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
 Frame = +3

Query: 273 GFVFVCNKSTIP-DLDRGIFGLPGNYEDSVRNIHRGMPLFLFDYTSRRLYGVFEAASDGG 449
           G++FVCN  T+  DL R +FGLP  Y DSVR I  G+PLFL++YT+ +L+G++EAAS GG
Sbjct: 38  GYIFVCNNDTMQEDLKRQLFGLPQRYRDSVRTIQPGLPLFLYNYTTHQLHGIYEAASFGG 97

Query: 450 YNIDPFAWENDDRSRRRHANAVSKYPAQVRVSIRAERPALEEESFRSI 593
            NIDP AWE+      +     S++PAQVR+ +R +   LEE+SFR I
Sbjct: 98  SNIDPTAWED------KKCRGESRFPAQVRIRVRKQCKPLEEDSFRPI 139


>tr|A9REG4|A9REG4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_174170 PE=4 SV=1
          Length = 166

 Score =  112 bits (280), Expect = 2e-23
 Identities = 56/108 (51%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
 Frame = +3

Query: 273 GFVFVCNKSTIP-DLDRGIFGLPGNYEDSVRNIHRGMPLFLFDYTSRRLYGVFEAASDGG 449
           G++FVCN  T+  DL R +FGLP  Y DSVR I  G+PLFL++YT+ +L+G+FEAAS GG
Sbjct: 45  GYIFVCNNDTMQEDLKRQLFGLPQRYRDSVRTIQPGLPLFLYNYTTHQLHGIFEAASFGG 104

Query: 450 YNIDPFAWENDDRSRRRHANAVSKYPAQVRVSIRAERPALEEESFRSI 593
            NIDP AWE+      +     S++PAQVR  IR +   LEE+SFR +
Sbjct: 105 SNIDPTAWED------KKCRGESRFPAQVRTRIRKQCKPLEEDSFRPV 146


>tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 302

 Score =  111 bits (278), Expect = 3e-23
 Identities = 57/108 (52%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
 Frame = +3

Query: 273 GFVFVCNKSTIP-DLDRGIFGLPGNYEDSVRNIHRGMPLFLFDYTSRRLYGVFEAASDGG 449
           G++FVCN  T+  DL R +FGLP  Y DSVR I  G+PLFL++YT+ +L+GVFEAAS GG
Sbjct: 169 GYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGVFEAASFGG 228

Query: 450 YNIDPFAWENDDRSRRRHANAVSKYPAQVRVSIRAERPALEEESFRSI 593
            NIDP AWE+      +     S++PAQVR+ +R    ALEE+SFR +
Sbjct: 229 SNIDPTAWED------KKCKGESRFPAQVRIRVRNICKALEEDSFRPV 270


>tr|B8A073|B8A073_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 302

 Score =  111 bits (277), Expect = 4e-23
 Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
 Frame = +3

Query: 273 GFVFVCNKSTIP-DLDRGIFGLPGNYEDSVRNIHRGMPLFLFDYTSRRLYGVFEAASDGG 449
           G++FVCN  T+  DL R +FGLP  Y DSVR I  G+PLFL++YT+ +L+GVFEAAS GG
Sbjct: 171 GYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAITPGLPLFLYNYTTHQLHGVFEAASFGG 230

Query: 450 YNIDPFAWENDDRSRRRHANAVSKYPAQVRVSIRAERPALEEESFRSI 593
            NIDP AWE+      +     S++PAQVR+ IR     LEE+SFR +
Sbjct: 231 SNIDPTAWED------KKCKGESRFPAQVRICIRKLCKPLEEDSFRPV 272


>tr|B6T8N2|B6T8N2_MAIZE Gda-1 OS=Zea mays PE=2 SV=1
          Length = 301

 Score =  111 bits (277), Expect = 4e-23
 Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
 Frame = +3

Query: 273 GFVFVCNKSTIP-DLDRGIFGLPGNYEDSVRNIHRGMPLFLFDYTSRRLYGVFEAASDGG 449
           G++FVCN  T+  DL R +FGLP  Y DSVR I  G+PLFL++YT+ +L+GVFEAAS GG
Sbjct: 170 GYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAITPGLPLFLYNYTTHQLHGVFEAASFGG 229

Query: 450 YNIDPFAWENDDRSRRRHANAVSKYPAQVRVSIRAERPALEEESFRSI 593
            NIDP AWE+      +     S++PAQVR+ IR     LEE+SFR +
Sbjct: 230 SNIDPTAWED------KKCKGESRFPAQVRICIRKLCKPLEEDSFRPV 271


>tr|B6TDG4|B6TDG4_MAIZE Gda-1 OS=Zea mays PE=2 SV=1
          Length = 323

 Score =  110 bits (276), Expect = 5e-23
 Identities = 56/108 (51%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
 Frame = +3

Query: 273 GFVFVCNKSTIP-DLDRGIFGLPGNYEDSVRNIHRGMPLFLFDYTSRRLYGVFEAASDGG 449
           G++FVCN  T+  DL R +FGLP  Y DSVR I  G+PLFL++YT+ +L+GVFEAAS GG
Sbjct: 192 GYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAITPGLPLFLYNYTTHQLHGVFEAASFGG 251

Query: 450 YNIDPFAWENDDRSRRRHANAVSKYPAQVRVSIRAERPALEEESFRSI 593
            NIDP AWE+      +     S++PAQVR+ +R     LEE+SFR +
Sbjct: 252 SNIDPTAWED------KKCKGESRFPAQVRIRVRKLCKPLEEDSFRPV 293


>tr|B4FUR5|B4FUR5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 322

 Score =  110 bits (276), Expect = 5e-23
 Identities = 56/108 (51%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
 Frame = +3

Query: 273 GFVFVCNKSTIP-DLDRGIFGLPGNYEDSVRNIHRGMPLFLFDYTSRRLYGVFEAASDGG 449
           G++FVCN  T+  DL R +FGLP  Y DSVR I  G+PLFL++YT+ +L+GVFEAAS GG
Sbjct: 191 GYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAITPGLPLFLYNYTTHQLHGVFEAASFGG 250

Query: 450 YNIDPFAWENDDRSRRRHANAVSKYPAQVRVSIRAERPALEEESFRSI 593
            NIDP AWE+      +     S++PAQVR+ +R     LEE+SFR +
Sbjct: 251 SNIDPTAWED------KKCKGESRFPAQVRIRVRKLCKPLEEDSFRPV 292


>tr|Q6L4U7|Q6L4U7_ORYSJ Os05g0498700 protein OS=Oryza sativa subsp.
           japonica GN=P0010D04.12 PE=4 SV=1
          Length = 314

 Score =  108 bits (270), Expect = 2e-22
 Identities = 55/108 (50%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
 Frame = +3

Query: 273 GFVFVCNKSTIP-DLDRGIFGLPGNYEDSVRNIHRGMPLFLFDYTSRRLYGVFEAASDGG 449
           G++FVCN  T+  DL R +FGLP  Y DSVR I  G+PLFL++YT+ +L+GVFEA+S GG
Sbjct: 183 GYIFVCNNDTMQEDLKRQLFGLPARYRDSVRAIIPGLPLFLYNYTTHQLHGVFEASSFGG 242

Query: 450 YNIDPFAWENDDRSRRRHANAVSKYPAQVRVSIRAERPALEEESFRSI 593
            NIDP AWE+      +     S++PAQVR+ IR     LEE++FR +
Sbjct: 243 SNIDPTAWED------KKCKGESRFPAQVRIRIRKLCKPLEEDAFRPV 284


>tr|B8LQZ7|B8LQZ7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 282

 Score =  108 bits (270), Expect = 2e-22
 Identities = 54/108 (50%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
 Frame = +3

Query: 273 GFVFVCNKSTIP-DLDRGIFGLPGNYEDSVRNIHRGMPLFLFDYTSRRLYGVFEAASDGG 449
           G++FVCN  T+  DL R +FGLP  Y DSVR I  G+PLFL++YT+ +L+G+FEAAS GG
Sbjct: 151 GYIFVCNNDTMQEDLKRQLFGLPQRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGG 210

Query: 450 YNIDPFAWENDDRSRRRHANAVSKYPAQVRVSIRAERPALEEESFRSI 593
            NIDP AWE+      +     S++PAQVR+ +R     LEE++FR +
Sbjct: 211 SNIDPTAWED------KKCKGESRFPAQVRIRVRKLCKPLEEDAFRPV 252