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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961407
Clone id TST39A01NGRL0010_A11
Library
Length 635
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_A11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTTGGCTTATGTCGATGCCAACTTAACTACCTCCTCGTGCACTCAGGCCGTCTCTCCCCG
AACAGTCTCTTCGTTCGAGAGATGGCCTGGATTTTGGGAGGGCATTGCCAGCTTCCTTGG
ATGATAAATAGCTATCATATTTGCCTCCGATGGACCGCTTCGGCCTGCATCCGACGGGAC
AGACATCCTCCATGCATTGGAGGATTTATCATTGTAGATTCACTGGCTCAATACTCTGAA
GGTAGATAAGTTGGCTTATGTCAATGCCAACCTTCGAGGCTTGGAGAAGGTTGGAGGATT
AAACAGTGGAGGTACAGTGAGCTCGACAATAAAACAGGTCGACCATAAAAAAGTCGTATT
GGAGGTTGCGGACATCTCGAAGCTTCAGCCACGCACTACAGAGGATGATGTCTATGACTT
CATTTGAGAGTACATGATGCGCTTCGCTCGACAGACTTGCTCTACTATACGATGTCGTCT
TGGAGAGGCATCAGATTCGGGTGTTGCTGTTTGTGTTGCAGCTAGCTACTCATGGATGTC
ACGGTTCATGCAACCGCTTTACTCGGAGGGTTGTGGAGCCTTTACACTTACTCCAGAGTG
TGAGAGTGATTCAGAGGATTCTCATTCTGACTCTT
■■Homology search results ■■ -
sp_hit_id P36197
Definition sp|P36197|ZEB1_CHICK Zinc finger E-box-binding homeobox 1 OS=Gallus gallus
Align length 55
Score (bit) 30.8
E-value 6.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961407|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_A11, 5'
         (635 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36197|ZEB1_CHICK Zinc finger E-box-binding homeobox 1 OS=Gal...    31   6.1  
sp|Q7SYB5|DEFI6_DANRE Differentially expressed in FDCP 6 homolog...    31   6.1  
sp|P37275|ZEB1_HUMAN Zinc finger E-box-binding homeobox 1 OS=Hom...    30   8.0  

>sp|P36197|ZEB1_CHICK Zinc finger E-box-binding homeobox 1 OS=Gallus
           gallus GN=ZEB1 PE=2 SV=1
          Length = 1114

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -2

Query: 181 CPVGCRPKRSIGGKYDSYLSSKEAGNALP---KSRPSLERRDCSGRDGLSARGGS 26
           CP  C+ + S  G Y S++SSK+    +P   ++R  L+   CS    LSA  GS
Sbjct: 270 CP-NCKKRFSHSGSYSSHISSKKCIGLMPVKGRARSGLKTSQCSS-PSLSASPGS 322


>sp|Q7SYB5|DEFI6_DANRE Differentially expressed in FDCP 6 homolog
           OS=Danio rerio GN=def6 PE=2 SV=1
          Length = 612

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 178 PVGCRPKRSIGGKYDSYLSSKEAGNALPKSRPSLERRDCSGRDGLSARGG 29
           P+G   KRS GG + S+    +   AL + + S E +D   ++ + +RGG
Sbjct: 548 PIGPGEKRSSGGSFSSFRIPSQKDPALRQKQKS-EEQDEESKENMESRGG 596


>sp|P37275|ZEB1_HUMAN Zinc finger E-box-binding homeobox 1 OS=Homo
           sapiens GN=ZEB1 PE=1 SV=2
          Length = 1124

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -2

Query: 181 CPVGCRPKRSIGGKYDSYLSSKEAGNALP---KSRPSLERRDCSGRDGLSARGGS 26
           CP  C+ + S  G Y S++SSK+  + +P   + R  L+   CS    LSA  GS
Sbjct: 270 CP-NCKKRFSHSGSYSSHISSKKCISLIPVNGRPRTGLKTSQCSS-PSLSASPGS 322
tr_hit_id Q0CPU2
Definition tr|Q0CPU2|Q0CPU2_ASPTN Putative uncharacterized protein OS=Aspergillus terreus (strain NIH 2624)
Align length 56
Score (bit) 35.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961407|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_A11, 5'
         (635 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0CPU2|Q0CPU2_ASPTN Putative uncharacterized protein OS=Asper...    35   2.9  
tr|B3M6V0|B3M6V0_DROAN GF10192 OS=Drosophila ananassae GN=GF1019...    34   8.4  

>tr|Q0CPU2|Q0CPU2_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_04292
           PE=4 SV=1
          Length = 345

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +1

Query: 253 GLCQCQPSRLGEGWRIKQWRY---SELDNKTGRP*KSRIGGCGHLEASATHYRG*C 411
           G C C   RLG G+ I++W +   S L N  G P    +G     E+S   YR  C
Sbjct: 221 GTCACTSCRLGSGFPIQEWAFIPKSNLFNADGSPLAFGVGTMQQYESSPEVYREFC 276


>tr|B3M6V0|B3M6V0_DROAN GF10192 OS=Drosophila ananassae GN=GF10192
            PE=4 SV=1
          Length = 2728

 Score = 33.9 bits (76), Expect = 8.4
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -1

Query: 515  HKQQHPNLMPLQDDIV**SKSVERSASC 432
            H+QQHPN  P Q D+V    SV+ S SC
Sbjct: 1184 HEQQHPNSSPCQTDVVMTDLSVDTSTSC 1211