NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961422
Clone id TST39A01NGRL0010_B04
Library
Length 592
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_B04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCAATGCTTATTACTGTAATCTTTATGAATGCTTCACTAATTAGGATGATTATTACTGT
AATCTTTCTGAATGCTTCACTTTTTAAGGCTCATAGAATAAGATTGAAATTTGGTGGTGC
TGGTGGTGACTTGTGTATGGTGACCATTGGTTAACAGAGGAAGAGGGGGAAGCTAGAAGT
TGGTAATGGCAGAGCTGGAAGTTGGTGGCAATTAGGTGAAGGAGTTAAAAAGAAACTCTC
TCGAAATTTGCTTTGGCGATGGCGAACTCGCTCCATTTCCTACTCCTTTCATGATTTGAT
AAAATCTCTATGCTCAAAGGCATATCCAAATGCTTTTTTGGGGGCAACATGCTAGATTAT
GGTCCTATGATTTCTGTTACAAGAACCGTGGTGTTTGCATGGTCATTTTAAGAGAACTTT
TGTATTACACAATTTACAATTTGGATATAGGTTACATGAAACTATGATTTCATAGGGAGG
CCTTGGAAAAGAAGCTTTATTTTTCGTTTTGATGGTGGCAATTGACTTAGGAAAGTCTAT
CCCACGAGTCTTGAACCCAGGACGTGGAAGGGGGGAAGAAGAAGTAAGTTTT
■■Homology search results ■■ -
sp_hit_id Q9Y5S1
Definition sp|Q9Y5S1|TRPV2_HUMAN Transient receptor potential cation channel subfamily V member 2 OS=Homo sapiens
Align length 66
Score (bit) 33.1
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961422|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_B04, 5'
         (592 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y5S1|TRPV2_HUMAN Transient receptor potential cation channe...    33   1.1  
sp|A8GII5|LPLT_SERP5 Lysophospholipid transporter lplT OS=Serrat...    32   2.4  
sp|Q6D108|LPLT_ERWCT Lysophospholipid transporter lplT OS=Erwini...    32   3.1  
sp|Q8ZMA5|LPLT_SALTY Lysophospholipid transporter lplT OS=Salmon...    31   4.1  
sp|Q8Z407|LPLT_SALTI Lysophospholipid transporter lplT OS=Salmon...    31   4.1  
sp|A9N3H7|LPLT_SALPB Lysophospholipid transporter lplT OS=Salmon...    31   4.1  
sp|Q5PEN8|LPLT_SALPA Lysophospholipid transporter lplT OS=Salmon...    31   4.1  
sp|Q57KA8|LPLT_SALCH Lysophospholipid transporter lplT OS=Salmon...    31   4.1  
sp|Q66D85|ZITB_YERPS Zinc transporter zitB OS=Yersinia pseudotub...    30   9.0  
sp|Q8ZGY6|ZITB_YERPE Zinc transporter zitB OS=Yersinia pestis GN...    30   9.0  
sp|Q7ME99|Y4771_VIBVY Putative reductase VVA0771 OS=Vibrio vulni...    30   9.1  
sp|Q8D795|Y4265_VIBVU Putative reductase VV2_0265 OS=Vibrio vuln...    30   9.1  
sp|P11636|QAY_NEUCR Quinate permease OS=Neurospora crassa GN=qa-...    30   9.1  
sp|Q1QN78|KUP_NITHX Probable potassium transport system protein ...    30   9.1  

>sp|Q9Y5S1|TRPV2_HUMAN Transient receptor potential cation channel
           subfamily V member 2 OS=Homo sapiens GN=TRPV2 PE=1 SV=1
          Length = 764

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -1

Query: 280 GNGASSPSPKQISREFLFNSFT*LPPTSSSAITNFXXXXXXXLTNGHHTQVTTSTTKFQS 101
           G GAS P P +  R+ LFN+ +   P   + +  +       LT+  +T+ +T  T    
Sbjct: 63  GTGASQPDPNRFDRDRLFNAVSRGVPEDLAGLPEYLSKTSKYLTDSEYTEGSTGKTCLMK 122

Query: 100 YSMSLK 83
             ++LK
Sbjct: 123 AVLNLK 128


>sp|A8GII5|LPLT_SERP5 Lysophospholipid transporter lplT OS=Serratia
           proteamaculans (strain 568) GN=lplT PE=3 SV=1
          Length = 398

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +2

Query: 38  LIRMIITVIFLNASLFKAHRIRLKFGGAGGDLCMVTIG*QRKRGKLEVGNGRAGSWWQLG 217
           LI + + +  L  +LF A+ + L  G  GG   +      ++RGK  VG G A +   LG
Sbjct: 291 LIGVAVAIFALQTTLFNAYALLLIIGVLGGFFVVPLNALLQERGKNSVGAGNAIAVQNLG 350

Query: 218 EGVKKKLSRNL 250
           E     L   L
Sbjct: 351 ENTAMLLMLGL 361


>sp|Q6D108|LPLT_ERWCT Lysophospholipid transporter lplT OS=Erwinia
           carotovora subsp. atroseptica GN=lplT PE=3 SV=1
          Length = 407

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +2

Query: 38  LIRMIITVIFLNASLFKAHRIRLKFGGAGGDLCMVTIG*QRKRGKLEVGNGRAGSWWQLG 217
           LI +++ +  L  +L  A+ + +  G  GG   +      ++RGK  VG G A +   LG
Sbjct: 291 LIGVVVVIFTLQHNLLSAYSLLILLGALGGFFIVPLNALLQERGKASVGAGNAIAVQNLG 350

Query: 218 E 220
           E
Sbjct: 351 E 351


>sp|Q8ZMA5|LPLT_SALTY Lysophospholipid transporter lplT
           OS=Salmonella typhimurium GN=lplT PE=3 SV=1
          Length = 400

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 28/110 (25%)
 Frame = +2

Query: 38  LIRMIITVIFLNASLFKAHRIRLKFGGAGGDLCMVTIG*QRKRGKLEVGNGRAGSWWQLG 217
           LI +++ +  L  +L  A+ + L  G  GG   +      ++RGK  VG G A +   LG
Sbjct: 291 LIGVVVAIFSLQHALLPAYALLLLIGMLGGFFVVPLNALLQERGKKSVGAGNAIAVQNLG 350

Query: 218 E----------------------------GVKKKLSRNLLWRWRTRSISY 283
           E                            GV   L+   LW W+ R  SY
Sbjct: 351 ENSAMLLMLGLYSLAVLVGVPAVAIGIGFGVLFALAIAALWIWQRRQASY 400


>sp|Q8Z407|LPLT_SALTI Lysophospholipid transporter lplT
           OS=Salmonella typhi GN=lplT PE=3 SV=1
          Length = 400

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 28/110 (25%)
 Frame = +2

Query: 38  LIRMIITVIFLNASLFKAHRIRLKFGGAGGDLCMVTIG*QRKRGKLEVGNGRAGSWWQLG 217
           LI +++ +  L  +L  A+ + L  G  GG   +      ++RGK  VG G A +   LG
Sbjct: 291 LIGVVVAIFSLQHALLPAYALLLLIGMLGGFFVVPLNALLQERGKKSVGAGNAIAVQNLG 350

Query: 218 E----------------------------GVKKKLSRNLLWRWRTRSISY 283
           E                            GV   L+   LW W+ R  SY
Sbjct: 351 ENSAMLLMLGLYSLAVLVGVPAVAIGIGFGVLFALAIAALWIWQRRQASY 400


>sp|A9N3H7|LPLT_SALPB Lysophospholipid transporter lplT
           OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
           GN=lplT PE=3 SV=1
          Length = 400

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 28/110 (25%)
 Frame = +2

Query: 38  LIRMIITVIFLNASLFKAHRIRLKFGGAGGDLCMVTIG*QRKRGKLEVGNGRAGSWWQLG 217
           LI +++ +  L  +L  A+ + L  G  GG   +      ++RGK  VG G A +   LG
Sbjct: 291 LIGVVVAIFSLQHALLPAYALLLLIGMLGGFFVVPLNALLQERGKKSVGAGNAIAVQNLG 350

Query: 218 E----------------------------GVKKKLSRNLLWRWRTRSISY 283
           E                            GV   L+   LW W+ R  SY
Sbjct: 351 ENSAMLLMLGLYSLAVLVGVPAVAIGIGFGVLFALAIAALWIWQRRQASY 400


>sp|Q5PEN8|LPLT_SALPA Lysophospholipid transporter lplT
           OS=Salmonella paratyphi A GN=lplT PE=3 SV=1
          Length = 400

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 28/110 (25%)
 Frame = +2

Query: 38  LIRMIITVIFLNASLFKAHRIRLKFGGAGGDLCMVTIG*QRKRGKLEVGNGRAGSWWQLG 217
           LI +++ +  L  +L  A+ + L  G  GG   +      ++RGK  VG G A +   LG
Sbjct: 291 LIGVVVAIFSLQHALLPAYALLLLIGMLGGFFVVPLNALLQERGKKSVGAGNAIAVQNLG 350

Query: 218 E----------------------------GVKKKLSRNLLWRWRTRSISY 283
           E                            GV   L+   LW W+ R  SY
Sbjct: 351 ENSAMLLMLGLYSLAVLVGVPAVAIGIGFGVLFALAIAALWIWQRRQASY 400


>sp|Q57KA8|LPLT_SALCH Lysophospholipid transporter lplT
           OS=Salmonella choleraesuis GN=lplT PE=3 SV=1
          Length = 400

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 28/110 (25%)
 Frame = +2

Query: 38  LIRMIITVIFLNASLFKAHRIRLKFGGAGGDLCMVTIG*QRKRGKLEVGNGRAGSWWQLG 217
           LI +++ +  L  +L  A+ + L  G  GG   +      ++RGK  VG G A +   LG
Sbjct: 291 LIGVVVAIFSLQHALLPAYALLLLIGMLGGFFVVPLNALLQERGKKSVGAGNAIAVQNLG 350

Query: 218 E----------------------------GVKKKLSRNLLWRWRTRSISY 283
           E                            GV   L+   LW W+ R  SY
Sbjct: 351 ENSAMLLMLGLYSLAVLVGVPAVAIGIGFGVLFALAIAALWIWQRRQASY 400


>sp|Q66D85|ZITB_YERPS Zinc transporter zitB OS=Yersinia
           pseudotuberculosis GN=zitB PE=3 SV=1
          Length = 312

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = -3

Query: 251 ANFERVSF*LLHLIATNFQLCH------YQLLASPSSSVNQWSPYTSHHQHH 114
           A  +R+   LLH    ++++ H      YQ   +P   +NQ +P   HH+HH
Sbjct: 262 ALLQRIQDYLLH----HYRISHATVQMEYQHCGTPDCGINQAAPADGHHRHH 309


>sp|Q8ZGY6|ZITB_YERPE Zinc transporter zitB OS=Yersinia pestis
           GN=zitB PE=3 SV=1
          Length = 312

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = -3

Query: 251 ANFERVSF*LLHLIATNFQLCH------YQLLASPSSSVNQWSPYTSHHQHH 114
           A  +R+   LLH    ++++ H      YQ   +P   +NQ +P   HH+HH
Sbjct: 262 ALLQRIQDYLLH----HYRISHATVQMEYQHCGTPDCGINQAAPADGHHRHH 309
tr_hit_id B0WG37
Definition tr|B0WG37|B0WG37_CULQU Putative uncharacterized protein OS=Culex quinquefasciatus
Align length 63
Score (bit) 37.0
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961422|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_B04, 5'
         (592 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0WG37|B0WG37_CULQU Putative uncharacterized protein OS=Culex...    37   0.83 
tr|O58659|O58659_PYRHO Putative uncharacterized protein PH0954 O...    33   9.4  

>tr|B0WG37|B0WG37_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ005846 PE=4 SV=1
          Length = 672

 Score = 37.0 bits (84), Expect = 0.83
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
 Frame = -3

Query: 284 SRKWSEFAIAKANFERVSF*LLHLIATNFQL-----CHYQLLASPSS-SVNQWSPYTSHH 123
           S+KW++     A+F+ VS        TNF L      HYQ++ASP    V Q +  T+HH
Sbjct: 95  SQKWNKLRRRCASFKTVSGPASLDSDTNFILGEHPAAHYQIIASPGPVQVQQTTTTTTHH 154

Query: 122 QHH 114
            HH
Sbjct: 155 HHH 157


>tr|O58659|O58659_PYRHO Putative uncharacterized protein PH0954
            OS=Pyrococcus horikoshii GN=PH0954 PE=4 SV=1
          Length = 4436

 Score = 33.5 bits (75), Expect = 9.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 472  IGRPWKRSFIFRFDGGN*LRKVYPTSLEPRTWKGGR 579
            +G+P+ +SF  R +  N  RK+Y T+  PR W  G+
Sbjct: 1092 LGQPFLKSFTVRAEIWNGTRKIYSTNAYPRNWSFGK 1127