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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961427
Clone id TST39A01NGRL0010_B09
Library
Length 609
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_B09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AAAAGTTTATGGGTCCGTGAGCACCATGTTAACTGTTGAGCCTGCAGAGTGAGGGGGCTC
TGTTAGTAGCGATCGAGGGGGAGCAAAGAGATTGTGTTTTCGTGTGTGTGATTGCGTGAG
AGGGAGAGAGAGAATATGCCTCCTCCTCCGAGACCCAAAGTTCCTCCTTACCTTCTGATG
CTGGTGGTCTCCTTCGCTCTTGTGGGCTTGATTGGCTACCAGACCCTCAAAGACCGCAAG
ATTTCTGGCGATCTGCTCCTGGAGAACCAAATGCTCAAAGACGATCTCAAGAAATTGAAG
AAGAAAGCAAGCGATTTACAAGAAAGATTTACGAAGCTATCTACACAGAAGGAAGAGCTA
AATGGGCTCAAAGATGGTCTGAGTGGACAGCTTATAGAGCTCAAACGTGTCAAGAGCTTG
ACTGAAGAGGGCACAAGGAAACTTGAGTCGTCCCTTCTGGAGAAGGAAAGTGAAGTCAAA
GACTTGAAAGTAAAACTTGCGTTGCTTGATGAGAAAGAGGAAGAGTTAAAGCTGATGAAG
AAGGAGATCCAGCAGAAGGATTCTGAAATAAGTGAGTTGAAAGCACAGATAAAAGCTGGG
GGCAAAGAG
■■Homology search results ■■ -
sp_hit_id Q15361
Definition sp|Q15361|TTF1_HUMAN Transcription termination factor 1 OS=Homo sapiens
Align length 94
Score (bit) 33.9
E-value 0.67
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961427|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_B09, 5'
         (609 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15361|TTF1_HUMAN Transcription termination factor 1 OS=Homo ...    34   0.67 
sp|P28277|HELI_HHV2H Probable ATP-dependent helicase UL5 OS=Huma...    32   2.0  
sp|P43100|NIA_BEABA Nitrate reductase [NADPH] OS=Beauveria bassi...    31   5.6  
sp|Q8L710|CRK17_ARATH Cysteine-rich receptor-like protein kinase...    31   5.6  
sp|Q5KWU5|SYA_GEOKA Alanyl-tRNA synthetase OS=Geobacillus kausto...    30   7.5  
sp|P55200|HRX_MOUSE Histone-lysine N-methyltransferase HRX OS=Mu...    30   7.5  
sp|Q10200|YBY1_SCHPO Uncharacterized protein C11C11.01 OS=Schizo...    30   9.6  
sp|Q8K424|TRPV3_MOUSE Transient receptor potential cation channe...    30   9.6  
sp|Q8NET8|TRPV3_HUMAN Transient receptor potential cation channe...    30   9.6  
sp|Q3U0S6|RAIN_MOUSE Ras-interacting protein 1 OS=Mus musculus G...    30   9.6  
sp|Q9FK91|PARP3_ARATH Poly [ADP-ribose] polymerase 3 OS=Arabidop...    30   9.6  
sp|P04290|KR2_HHV11 Probable serine/threonine-protein kinase OS=...    30   9.6  
sp|P34184|TOP1_BACPF DNA topoisomerase 1 (Fragment) OS=Bacillus ...    30   9.7  
sp|P10189|HELI_HHV11 Probable ATP-dependent helicase UL5 OS=Huma...    30   9.7  

>sp|Q15361|TTF1_HUMAN Transcription termination factor 1 OS=Homo
           sapiens GN=TTF1 PE=1 SV=3
          Length = 905

 Score = 33.9 bits (76), Expect = 0.67
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
 Frame = -1

Query: 291 LEIVFEHLVLQEQIARNLAV--FEGLVANQAHKSEGDH---------QHQKVRRNFGSRR 145
           +++V   + +++++ R      F+ L  + AHKSE  H         +HQ+   ++ S+R
Sbjct: 123 VDVVCVDMSIEQKLPRKPKTDKFQVLAKSHAHKSEALHSKVREKKNKKHQRKAASWESQR 182

Query: 144 RRHILSLPLTQSHTRKHNLFAPPRSLLTEPPHSA 43
            R   +LP ++SH  +  L   P   +TE P SA
Sbjct: 183 ARD--TLPQSESHQEESWLSVGPGGEITELPASA 214


>sp|P28277|HELI_HHV2H Probable ATP-dependent helicase UL5 OS=Human
           herpesvirus 2 (strain HG52) GN=UL5 PE=3 SV=2
          Length = 881

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
 Frame = -1

Query: 291 LEIVFEHLVLQEQIARNLAVFEGLVANQAHKSEGDHQH---------QKVRRNFGSRRRR 139
           LE  FEH  L+  + ++  V   L+ N+  +      H         + V   FG+  + 
Sbjct: 297 LESTFEHQKLRCSVRQSENVLTYLICNRTLREYTRLSHSWAIFINNKRCVEHEFGNLMKV 356

Query: 138 HILSLPLTQSHTRKHNLFAPPRSLLTEPPHSAGST 34
               LP+T+ H +  + F  P S +T P +  G T
Sbjct: 357 LEYGLPITEEHMQFVDRFVVPESYITNPANLPGWT 391


>sp|P43100|NIA_BEABA Nitrate reductase [NADPH] OS=Beauveria bassiana
           GN=NIA PE=3 SV=1
          Length = 894

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 136 YSLSPSHAITHTKTQSLCSPSIATNRAPSLCRLNS*H 26
           YSL P++  TH   + L +P    NR P L RL   H
Sbjct: 57  YSLPPTNTPTHVLPEDLKTPDHRVNRDPRLIRLTGVH 93


>sp|Q8L710|CRK17_ARATH Cysteine-rich receptor-like protein kinase 17
           OS=Arabidopsis thaliana GN=CRK17 PE=2 SV=2
          Length = 686

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 216 LPDPQRPQDFWRSAPGEPNAQRRSQEIEEESKRFTRKIYEAIYTE 350
           LP PQ P  F+R+ PG   + +     +  SK FT  + EA  T+
Sbjct: 638 LPVPQPPGFFFRNGPGSNPSSQGMVPGQSSSKSFTSSVDEATITQ 682


>sp|Q5KWU5|SYA_GEOKA Alanyl-tRNA synthetase OS=Geobacillus
           kaustophilus GN=alaS PE=3 SV=1
          Length = 887

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 316 LQERFTKLSTQKEELNGLKDGLSGQLIELKR 408
           LQE   KL T  +ELN   DGL  +L EL+R
Sbjct: 725 LQEAAQKLKTSPKELNARLDGLFAELKELER 755


>sp|P55200|HRX_MOUSE Histone-lysine N-methyltransferase HRX OS=Mus
           musculus GN=Mll PE=2 SV=2
          Length = 3966

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = -1

Query: 264 LQEQIARNLAVFEGLVANQAHKSEGDHQHQK----VRRNFGSRRRRHILSLPLTQSHTRK 97
           L E+ +    V   L  +Q+ ++E + +  +      R+FGSR  +    LP  QS  ++
Sbjct: 497 LPEERSNTPEVHTPLPISQSPENESNDRRSRRYSMSERSFGSRATK---KLPTLQSAPQQ 553

Query: 96  HNLFAPPRSLLTEPP 52
               +PP  LLT PP
Sbjct: 554 QTSSSPPPPLLTPPP 568


>sp|Q10200|YBY1_SCHPO Uncharacterized protein C11C11.01
           OS=Schizosaccharomyces pombe GN=SPBC11C11.01 PE=1 SV=1
          Length = 493

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 264 EPNAQRRSQEIEEESKRFTRKIYEAIYTEGRAKWAQRWSEWTAYRAQTCQ 413
           EP+ +R   ++   SKR   +I E I+ +   K  + W  W A++ +T +
Sbjct: 336 EPHVERLLDDLYLFSKRLGGRIKEDIFCKKVVKVIEVWKTWIAFQEETLE 385


>sp|Q8K424|TRPV3_MOUSE Transient receptor potential cation channel
           subfamily V member 3 OS=Mus musculus GN=Trpv3 PE=2 SV=2
          Length = 791

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = +3

Query: 192 LRSC---GLDWLPDPQRPQDFWRSAPGEPN---AQRRSQEIEEESKRFTRKIYEAI 341
           +R C     D +  PQ PQD     P  PN   A    +E  ++ KR  ++I+ A+
Sbjct: 72  IRQCLSGNCDDMDSPQSPQDDVTETPSNPNSPSANLAKEEQRQKKKRLKKRIFAAV 127


>sp|Q8NET8|TRPV3_HUMAN Transient receptor potential cation channel
           subfamily V member 3 OS=Homo sapiens GN=TRPV3 PE=1 SV=2
          Length = 790

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = +3

Query: 192 LRSC---GLDWLPDPQRPQDFWRSAPGEPN---AQRRSQEIEEESKRFTRKIYEAI 341
           +R C     D +  PQ PQD     P  PN   AQ   +E   + +R  ++I+ A+
Sbjct: 72  IRQCISGNCDDMDSPQSPQDDVTETPSNPNSPSAQLAKEEQRRKKRRLKKRIFAAV 127


>sp|Q3U0S6|RAIN_MOUSE Ras-interacting protein 1 OS=Mus musculus
           GN=Rasip1 PE=1 SV=2
          Length = 961

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 183 GGLLRSCGLDWLPDPQRP---QDFWRSAPGEPNAQRRSQEIEEESKRFTRKIYEAIYTEG 353
           GG  R+  L  L D +RP   QD WR+ PG   A+R      EE++R  ++ + A   +G
Sbjct: 212 GGEWRAEHLRVLADAERPLLVQDLWRARPGW--ARRFELRGREEARRLEQEAFGAADADG 269
tr_hit_id Q07ZY2
Definition tr|Q07ZY2|Q07ZY2_SHEFN PpiC-type peptidyl-prolyl cis-trans isomerase OS=Shewanella frigidimarina (strain NCIMB 400)
Align length 84
Score (bit) 33.9
E-value 7.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961427|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_B09, 5'
         (609 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q07ZY2|Q07ZY2_SHEFN PpiC-type peptidyl-prolyl cis-trans isome...    34   7.6  
tr|A0CVP5|A0CVP5_PARTE Chromosome undetermined scaffold_29, whol...    34   7.6  
tr|B5MDJ2|B5MDJ2_HUMAN Putative uncharacterized protein TTF1 OS=...    34   7.6  
tr|B4DZG2|B4DZG2_HUMAN cDNA FLJ56521, highly similar to Homo sap...    34   7.6  
tr|Q806C4|Q806C4_CHV1 Component of DNA helicase-primase complex ...    33   10.0 

>tr|Q07ZY2|Q07ZY2_SHEFN PpiC-type peptidyl-prolyl cis-trans
           isomerase OS=Shewanella frigidimarina (strain NCIMB 400)
           GN=Sfri_2592 PE=4 SV=1
          Length = 625

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = +1

Query: 172 LLMLVVSFALVGLIGY----QTLKDRKISGDLLLENQMXXXXXXXXXXXASDLQERFTKL 339
           L+++++SFA  G+  Y      +    ++GD +  N++              L E FT L
Sbjct: 18  LVLVILSFAFAGVSSYLGSNTGVPAAVVNGDEIGANELEQAFQNERSRIEQQLGEMFTAL 77

Query: 340 STQKEELNGLKDGLSGQLIELKRV 411
           +     +NG+K G+  +LI  K +
Sbjct: 78  AADDSYMNGIKQGVLDRLIADKLI 101


>tr|A0CVP5|A0CVP5_PARTE Chromosome undetermined scaffold_29, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00011030001 PE=4 SV=1
          Length = 421

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +1

Query: 214 GYQTLKDRKISGDLLLENQMXXXXXXXXXXXASDLQERFTKLSTQKEELNGLKDGLSGQL 393
           G   LK  K      ++NQ+            + + E  T+L   K + N LKD  + + 
Sbjct: 251 GLCNLKIEKQQNTNSIKNQIKSQFQYLEKNQQTKINELQTQLQVLKSKFNKLKDENTQEE 310

Query: 394 IELKRVKSLTEEG 432
           I+LKR+K + E+G
Sbjct: 311 IKLKRIKQIQEQG 323


>tr|B5MDJ2|B5MDJ2_HUMAN Putative uncharacterized protein TTF1
           OS=Homo sapiens GN=TTF1 PE=4 SV=1
          Length = 882

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
 Frame = -1

Query: 291 LEIVFEHLVLQEQIARNLAV--FEGLVANQAHKSEGDH---------QHQKVRRNFGSRR 145
           +++V   + +++++ R      F+ L  + AHKSE  H         +HQ+   ++ S+R
Sbjct: 123 VDVVCVDMSIEQKLPRKPKTDKFQVLAKSHAHKSEALHSKVREKKNKKHQRKAASWESQR 182

Query: 144 RRHILSLPLTQSHTRKHNLFAPPRSLLTEPPHSA 43
            R   +LP ++SH  +  L   P   +TE P SA
Sbjct: 183 ARD--TLPQSESHQEESWLSVGPGGEITELPASA 214


>tr|B4DZG2|B4DZG2_HUMAN cDNA FLJ56521, highly similar to Homo
           sapiens transcription termination factor, RNA polymerase
           I (TTF1), mRNA OS=Homo sapiens PE=2 SV=1
          Length = 905

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
 Frame = -1

Query: 291 LEIVFEHLVLQEQIARNLAV--FEGLVANQAHKSEGDH---------QHQKVRRNFGSRR 145
           +++V   + +++++ R      F+ L  + AHKSE  H         +HQ+   ++ S+R
Sbjct: 123 VDVVCVDMSIEQKLPRKPKTDKFQVLAKSHAHKSEALHSKVREKKNKKHQRKAASWESQR 182

Query: 144 RRHILSLPLTQSHTRKHNLFAPPRSLLTEPPHSA 43
            R   +LP ++SH  +  L   P   +TE P SA
Sbjct: 183 ARD--TLPQSESHQEESWLSVGPGGEITELPASA 214


>tr|Q806C4|Q806C4_CHV1 Component of DNA helicase-primase complex
           (Component of helicase-primase complex)
           OS=Cercopithecine herpesvirus 1 GN=UL5 PE=4 SV=1
          Length = 882

 Score = 33.5 bits (75), Expect = 10.0
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
 Frame = -1

Query: 291 LEIVFEHLVLQEQIARNLAVFEGLVANQAHKSEGD---------HQHQKVRRNFGSRRRR 139
           LE  FEH  L+  I ++  V   L+ N+  +             +  + V   FG+  + 
Sbjct: 292 LESTFEHQKLRCSIRQSENVLTYLICNRTLREYARLPRSWAIFINNKRCVEHEFGNLMKA 351

Query: 138 HILSLPLTQSHTRKHNLFAPPRSLLTEPPHSAGST 34
               LPLT+ H +  + F  P S +T P +  G T
Sbjct: 352 LEYGLPLTEEHMQFVDRFVVPESFITNPANLPGWT 386