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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961450
Clone id TST39A01NGRL0010_C14
Library
Length 595
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_C14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGAATCTGTATACTCTCATAGGCGATTAGTGCTTATTTGCTTCTTGAGAGGAAAACCCTC
TGGTACTCTGGAGTGTGCGTTTTGTGGGCGATGGAAAACTGTCCCAGAACTCGAAGTGAT
AGGGAGAGTCGTCTGCCATTGAGAGTATGAGAGCGGGGGTCTTGAAAAAGAAAGCAGATT
TGTAGCGTGTGTGTGCGTGAGAGAGAGAGAGATACATAGAGAGAGAGAAAGAGAGAGCGA
GTCGAGAGGTACTCGGGTGTGTGTGTACCACCTCCCTCCATAACGGCTGTTGCTTTCTTT
CTTTTCCACAACAAGCGGGATGCCCGGAGAAGGAACATATTGATGTGCTATCTGCTTTGA
GCACCTCGCTTCTTGATGGTGTGCTTTTATGGCTCCTGCTCATATCTGCCATACAAGTGG
GCGCTCAGATACTTATCCACTTGAAAGATTTATAGCGAGATTACTCTTTCTCTCTTTCTC
TCTGTCTGTCATCTTGAGGGCTTTTCTTGATTACACAGCAGAATGCTTATTTGCTAACTT
GTATTTGATAGAGGATATGGCAGTTTGCTGATTTTTCCCCGCACCGAGGCTGACT
■■Homology search results ■■ -
sp_hit_id O70514
Definition sp|O70514|FGFP1_MOUSE Fibroblast growth factor-binding protein 1 OS=Mus musculus
Align length 61
Score (bit) 33.5
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961450|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_C14, 5'
         (595 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O70514|FGFP1_MOUSE Fibroblast growth factor-binding protein 1...    33   0.83 
sp|Q9QY10|FGFP1_RAT Fibroblast growth factor-binding protein 1 O...    33   1.4  
sp|Q8LPC4|EF1A_PORYE Elongation factor 1-alpha OS=Porphyra yezoe...    33   1.4  
sp|P06447|L_SENDZ Large structural protein OS=Sendai virus (stra...    30   7.0  
sp|O55528|L_SENDO Large structural protein OS=Sendai virus (stra...    30   7.0  
sp|Q06996|L_SENDF Large structural protein OS=Sendai virus (stra...    30   7.0  
sp|P06829|L_SENDE Large structural protein OS=Sendai virus (stra...    30   7.0  
sp|Q9DUD8|L_SENDA Large structural protein OS=Sendai virus (stra...    30   7.0  

>sp|O70514|FGFP1_MOUSE Fibroblast growth factor-binding protein 1
           OS=Mus musculus GN=Fgfbp1 PE=1 SV=1
          Length = 251

 Score = 33.5 bits (75), Expect = 0.83
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -1

Query: 442 KWISI*APTCMADMSRSHKSTPSRSEVLKADSTSICSFSGHPACCGKERKQQPLWREVVH 263
           K+++    TC   ++   +    + +  +AD    C F+G P  C K  K Q  W++V  
Sbjct: 65  KFVTKDQATCRWAVTEEEQGISLKVQCTQADQEFSCVFAGDPTDCLKHDKDQIYWKQVAR 124

Query: 262 T 260
           T
Sbjct: 125 T 125


>sp|Q9QY10|FGFP1_RAT Fibroblast growth factor-binding protein 1
           OS=Rattus norvegicus GN=Fgfbp1 PE=1 SV=1
          Length = 238

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 17/76 (22%), Positives = 32/76 (42%)
 Frame = -1

Query: 487 RQREREKE*SRYKSFKWISI*APTCMADMSRSHKSTPSRSEVLKADSTSICSFSGHPACC 308
           R ++R +        ++++    TC   ++        + +  +AD    C F+G P  C
Sbjct: 47  RNKQRSRTSKSMTHGRFVTKDQATCRWAVTEEELGINLKVQCTRADQEFSCVFAGDPTGC 106

Query: 307 GKERKQQPLWREVVHT 260
            K  K Q  W++V  T
Sbjct: 107 LKYDKDQTYWKQVART 122


>sp|Q8LPC4|EF1A_PORYE Elongation factor 1-alpha OS=Porphyra
           yezoensis PE=2 SV=1
          Length = 449

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +1

Query: 61  WYSGVCVLWAMENC--PRTRSDRESRLPLR 144
           WY G C+L A++NC  P+   D+  RLPL+
Sbjct: 214 WYKGPCLLEALDNCDPPKRPVDKPLRLPLQ 243


>sp|P06447|L_SENDZ Large structural protein OS=Sendai virus (strain Z)
            GN=L PE=1 SV=1
          Length = 2228

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 276  LHNGCCFLSFPQQAGCPEKEHIDV 347
            L+NGCC +  PQ+A  P +  +D+
Sbjct: 1367 LNNGCCIMESPQEANIPPRSTLDL 1390


>sp|O55528|L_SENDO Large structural protein OS=Sendai virus (strain
            Ohita) GN=L PE=3 SV=1
          Length = 2228

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 276  LHNGCCFLSFPQQAGCPEKEHIDV 347
            L+NGCC +  PQ+A  P +  +D+
Sbjct: 1367 LNNGCCIMESPQEANIPPRSTLDL 1390


>sp|Q06996|L_SENDF Large structural protein OS=Sendai virus (strain
            Fushimi) GN=L PE=3 SV=1
          Length = 2228

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 276  LHNGCCFLSFPQQAGCPEKEHIDV 347
            L+NGCC +  PQ+A  P +  +D+
Sbjct: 1367 LNNGCCIMESPQEANIPPRSTLDL 1390


>sp|P06829|L_SENDE Large structural protein OS=Sendai virus (strain
            Enders) GN=L PE=3 SV=2
          Length = 2228

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 276  LHNGCCFLSFPQQAGCPEKEHIDV 347
            L+NGCC +  PQ+A  P +  +D+
Sbjct: 1367 LNNGCCIMESPQEANIPPRSTLDL 1390


>sp|Q9DUD8|L_SENDA Large structural protein OS=Sendai virus (strain
            Hamamatsu) GN=L PE=3 SV=1
          Length = 2228

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 276  LHNGCCFLSFPQQAGCPEKEHIDV 347
            L+NGCC +  PQ+A  P +  +D+
Sbjct: 1367 LNNGCCIMESPQEANIPPRSTLDL 1390
tr_hit_id Q2S803
Definition tr|Q2S803|Q2S803_HAHCH Predicted Hydrolase or acyltransferase (Alpha/beta hydrolase superfamily) OS=Hahella chejuensis (strain KCTC 2396)
Align length 67
Score (bit) 34.7
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961450|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_C14, 5'
         (595 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2S803|Q2S803_HAHCH Predicted Hydrolase or acyltransferase (A...    35   4.3  

>tr|Q2S803|Q2S803_HAHCH Predicted Hydrolase or acyltransferase
           (Alpha/beta hydrolase superfamily) OS=Hahella chejuensis
           (strain KCTC 2396) GN=HCH_06584 PE=4 SV=1
          Length = 305

 Score = 34.7 bits (78), Expect = 4.3
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
 Frame = -2

Query: 483 REKERKSNLAINLSSG*VSERPL-----VWQI*AGAIKAHHQEARCSKQIAH-QYVPSPG 322
           R+ +R  +L + ++S    ++P+     +W+I  G ++ HHQEA   + +A  + V SP 
Sbjct: 139 RQPQRIKSLTLMMTSNNSPKQPMPDLGTLWRINGGGVRGHHQEAALRRGVAFWETVQSPS 198

Query: 321 IPLVVEK 301
            P   E+
Sbjct: 199 FPTPKER 205