NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961470
Clone id TST39A01NGRL0010_D12
Library
Length 644
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_D12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TCTGTCTGCATCACTCTCAAGGAGAATGAGCTAAATGGTCTTCCTCGTCTGCTCCGCGTC
TTGCTGGTGAATATAGCCAACAAGCGGCAAAGAGAAAGAGAGAGTTTCTGATTGCAAACT
TTTTTTTTTTTGAGGTAGACGAAGAGGAAAAATCGTTGGGCGCCTTTTTCCTGCTGGTGT
GCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATG
CCTCAATGGTGCTAGCACAAGATCCCTACCATCGCCTGCGTTTTCGAAGAATTTGCTTTG
CATGTGTCTTGCTGTTTCAGCTGTCATGGATTGTGCCATGCACATATTTTCTGCTATGGC
AAAGCTCGATGCCAAGGATGCTCATACTGCAAGATCGGAATGCAAGTAGCAGAATCAATA
CTCAGGGGTTTTCTGGTGCCATCAAAGTTCTCCGTGGCCATGATCATATGGTGTTGAACA
AGCTATATGATAATTGGAACGTTTTTCTGCCAAAACTGAAGGAAAGGTTGGCATTAAAGG
GCTTTGTGCAATCACCTGAAAGAACTTGCTTCCTTTGGCTTTCAGAATGCTTTTCATTCG
GAAAACATGAGAGGATCTTACAAATAGTGAAAGAAGCCATTGGA
■■Homology search results ■■ -
sp_hit_id A8MQ03
Definition sp|A8MQ03|CI169_HUMAN UPF0574 protein C9orf169 OS=Homo sapiens
Align length 37
Score (bit) 32.0
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961470|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_D12, 5'
         (644 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8MQ03|CI169_HUMAN UPF0574 protein C9orf169 OS=Homo sapiens G...    32   2.8  
sp|Q9Y548|YIPF1_HUMAN Protein YIPF1 OS=Homo sapiens GN=YIPF1 PE=...    31   4.8  

>sp|A8MQ03|CI169_HUMAN UPF0574 protein C9orf169 OS=Homo sapiens
           GN=C9orf169 PE=2 SV=1
          Length = 144

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 286 EEFALHVSCCFSCHGLCHAHIFCYGKARCQGCSYCKI 396
           ++ A H  CC  CH  CH   FC    RC  C  C I
Sbjct: 112 DDIAHHCCCCPCCH-CCHCPPFC----RCHSCCCCVI 143


>sp|Q9Y548|YIPF1_HUMAN Protein YIPF1 OS=Homo sapiens GN=YIPF1 PE=2
           SV=1
          Length = 306

 Score = 31.2 bits (69), Expect = 4.8
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 252 LAQDPYHRL-RFRRICFACVLLFQLSWIVPCTY--FLLWQSS 368
           L +  YH +  FR++  A  +++  +W+VP     FL+W++S
Sbjct: 147 LGEKTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLMWRNS 188
tr_hit_id Q2QNE9
Definition tr|Q2QNE9|Q2QNE9_ORYSJ Zinc knuckle family protein, expressed OS=Oryza sativa subsp. japonica
Align length 26
Score (bit) 34.7
E-value 5.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961470|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_D12, 5'
         (644 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QNE9|Q2QNE9_ORYSJ Zinc knuckle family protein, expressed OS...    35   5.1  
tr|A3CIJ9|A3CIJ9_ORYSJ Putative uncharacterized protein OS=Oryza...    35   5.1  
tr|Q2GR87|Q2GR87_CHAGB Putative uncharacterized protein OS=Chaet...    35   5.1  
tr|A3TNC0|A3TNC0_9MICO Putative integral membrane protein OS=Jan...    34   8.8  
tr|B4J5I7|B4J5I7_DROGR GH20846 OS=Drosophila grimshawi GN=GH2084...    34   8.8  

>tr|Q2QNE9|Q2QNE9_ORYSJ Zinc knuckle family protein, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os12g38040 PE=4
           SV=2
          Length = 641

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 310 CCFSCHGLCHAHIFCYGKARCQGCSY 387
           CCF+C GL H    C G  RC  C Y
Sbjct: 131 CCFNCLGLGHQKSACPGSTRCYNCWY 156


>tr|A3CIJ9|A3CIJ9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035121 PE=4 SV=1
          Length = 983

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 310 CCFSCHGLCHAHIFCYGKARCQGCSY 387
           CCF+C GL H    C G  RC  C Y
Sbjct: 131 CCFNCLGLGHQKSACPGSTRCYNCWY 156


>tr|Q2GR87|Q2GR87_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_09517 PE=4 SV=1
          Length = 1101

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 295 ALHVSCCFSCHGLCHAHIFCYGKARCQGCS 384
           AL V+ C+ C    H H FC GKA C  C+
Sbjct: 128 ALQVTQCYKCWRWGHTHRFCKGKATCPRCA 157


>tr|A3TNC0|A3TNC0_9MICO Putative integral membrane protein
           OS=Janibacter sp. HTCC2649 GN=JNB_13728 PE=4 SV=1
          Length = 406

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 261 DPYHRLRFRRICFACVLLFQLSWIVPCTYFLLWQSSMPRMLIL 389
           DP HR+  RR  +   LL Q+ W++ C   L W   +P +L+L
Sbjct: 136 DPTHRVTLRRYVWL-TLLAQVGWVIVCLTHLPWIVLLPVLLVL 177


>tr|B4J5I7|B4J5I7_DROGR GH20846 OS=Drosophila grimshawi GN=GH20846
           PE=4 SV=1
          Length = 679

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = +3

Query: 327 WIVPCTYFLLWQSSMPRMLILQDRNASSRINTQGFSGAIKVLRG----HDHMVLNKLYDN 494
           W+      +L Q  +PR ++LQ+R    + N   F  A +VL+      D   L+K    
Sbjct: 209 WLTLRRLIMLGQLEVPRAILLQNR----KFNQAAFQAAEQVLKTMPVYQDGYALHKFNSQ 264

Query: 495 WNVFLPKLKERLALKGFVQSPE 560
           W  +   L  +LA + F   P+
Sbjct: 265 WEYWHVDLDRKLAAQTFAAEPQ 286