DK961481
Clone id TST39A01NGRL0010_D24
Library
Length 678
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_D24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GGTTTTGTGTGTGGATGAGGCTCCAAGTTTTGTAATCTCTACCGCTATGGCGAGCTCACT
TCTGTCGGCGAGGCCACACCTCTCGTCGTCTTTCTGTTGCCCCACCTCGCAGCTTTGTAT
TTCCAGCAGCGGAAGCACTTTCGTCTCCATCGCGCATTTCAAGCAAGAGTCGCCCCTTTC
TTCCCTACAGAGCAAGGCTGAGAGTGCTGGATTCCTTCCTGTAGAGTGCTCATCGCGGCC
TCAGAAGAAATGCACGGCTCACCATAATAAGACTCGTCCCAAGAAGCACAACCCTTCCGA
CAAGAACCGCAAGCCGGCAGTGTATCCCCCGTTCCCTGATCCCCCCCCTGCTGTTGTCCT
CGGCTGGGGTGACGAACATGATGATGATGATGATGCTTCTCCTGCCTCCGCTCCTGCTCC
CTCTGCAGCTGAGCCTGCGGTAGTGGGTGCTTAGTGGGTGATCAAAGAAACATGATCAAT
CATACTGGTGGCAGACATTCACATAGGGAGGAGACATGCCTGCTCATGGTCTGATGCTGA
GGGTGCGTTCAAATCATTACTTTTCCTGGGTAACTTTAGTTGCTACAGATTACTTGTAAC
TGTTGACTTGTCTGTAATTGCCTACTCCAGTTTGGATATGATGTCCTTTGGTCTTCAAGT
AATTCAAATGAAGTATTA
■■Homology search results ■■ -
sp_hit_id P11892
Definition sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum sativum
Align length 54
Score (bit) 59.7
E-value 1.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961481|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_D24, 5'
(678 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pi... 60 1e-08
sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic OS=... 52 3e-06
sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic OS=... 47 9e-05
sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens GN=... 34 0.81
sp|Q6NRK3|ANR56_XENLA Ankyrin repeat domain-containing protein 5... 33 1.4
sp|Q9CMZ1|Y659_PASMU UPF0192 protein PM0659 OS=Pasteurella multo... 32 3.1
sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis P... 32 3.1
sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis P... 32 3.1
sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 pr... 32 4.0
sp|P39712|FLO9_YEAST Flocculation protein FLO9 OS=Saccharomyces ... 32 4.0
sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog OS=Arabidopsis thaliana G... 32 4.0
sp|P11370|ENV2_MOUSE Retrovirus-related Env polyprotein from Fv-... 31 5.3
sp|Q8HXL3|WDR62_PIG WD repeat-containing protein 62 OS=Sus scrof... 31 6.9
sp|P32768|FLO1_YEAST Flocculation protein FLO1 OS=Saccharomyces ... 31 6.9
sp|P31041|CD28_MOUSE T-cell-specific surface glycoprotein CD28 O... 31 6.9

>sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum
sativum GN=PSRP6 PE=3 SV=1
Length = 104

Score = 59.7 bits (143), Expect = 1e-08
Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 6/54 (11%)
Frame = +2

Query: 170 SPLSSLQSKA------ESAGFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 313
+P SSL++KA + G L +ECSSRPQKK TAHH KTRP+K SD+NRK
Sbjct: 15 APNSSLRNKAIRTERRSACGGLLIECSSRPQKKSTAHHMKTRPRKSRLSDRNRK 68


>sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic
OS=Arabidopsis thaliana GN=PSRP6 PE=3 SV=1
Length = 106

Score = 52.0 bits (123), Expect = 3e-06
Identities = 23/31 (74%), Positives = 24/31 (77%)
Frame = +2

Query: 221 VECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 313
+ECSSRPQKK TAHH KTRPKK P D RK
Sbjct: 38 IECSSRPQKKSTAHHRKTRPKKTQPWDIKRK 68


>sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic
OS=Spinacia oleracea GN=PSRP6 PE=1 SV=1
Length = 116

Score = 47.0 bits (110), Expect = 9e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +2

Query: 209 GFLPVECSSRPQKKCTAHHNKTRPKK 286
G + +ECSSRPQKK TAHH KTRPKK
Sbjct: 41 GVITIECSSRPQKKGTAHHMKTRPKK 66


>sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens
GN=TPRXL PE=2 SV=1
Length = 257

Score = 33.9 bits (76), Expect = 0.81
Identities = 26/90 (28%), Positives = 41/90 (45%)
Frame = +2

Query: 38 STAMASSLLSARPHLSSSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFL 217
S++ +SS S+ P SSS P+S SSS S+ S ++ S SS S + S+
Sbjct: 71 SSSPSSSHSSSSPSSSSSTSSPSSS---SSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSS 127

Query: 218 PVECSSRPQKKCTAHHNKTRPKKHNPSDKN 307
P SS P ++ + +PS +
Sbjct: 128 PSSSSSSPSSSSSSSSSSPSSSSSSPSSSS 157


>sp|Q6NRK3|ANR56_XENLA Ankyrin repeat domain-containing protein 56
OS=Xenopus laevis GN=ankrd56 PE=2 SV=1
Length = 813

Score = 33.1 bits (74), Expect = 1.4
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Frame = +2

Query: 38 STAMASSLLSARPH--------LSSSFCCPTSQLCIS----SSGSTFVSIAHFKQESPLS 181
+T +S ++RPH LSSSF P S ++ +S S S + ++++P S
Sbjct: 193 NTRQSSFTSTSRPHNHSLSSNNLSSSFSSPESPGLVAKPYNASPSPAGSSPNIREQTPKS 252

Query: 182 SLQSKAESAGFLPVECSSRPQKK--CT 256
SKA +A F+ V C+ +++ CT
Sbjct: 253 QSLSKAANAAFVSVTCTDIKEQREGCT 279


>sp|Q9CMZ1|Y659_PASMU UPF0192 protein PM0659 OS=Pasteurella
multocida GN=PM0659 PE=3 SV=1
Length = 1905

Score = 32.0 bits (71), Expect = 3.1
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2

Query: 140 FVSIAHFKQE-SPLSSLQSKAESAGFLPVE 226
F S+AHFKQE +P+ L S ES FLP++
Sbjct: 588 FSSLAHFKQELAPVMYLVSTQESLSFLPID 617


>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2
SV=1
Length = 610

Score = 32.0 bits (71), Expect = 3.1
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2

Query: 86 SSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFLPVECSSRPQKKCTAHH 265
SSF CP + I+ T + L++L KA PVE +RP +KC+ H
Sbjct: 178 SSFACPECKESITDRKYTINRV--------LANLAKKAACTPVTPVEKKTRPLEKCSEHD 229

Query: 266 NKTR 277
+ +
Sbjct: 230 ERLK 233


>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1
SV=1
Length = 609

Score = 32.0 bits (71), Expect = 3.1
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2

Query: 86 SSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFLPVECSSRPQKKCTAHH 265
SSF CP + I+ T + L++L KA PVE +RP +KC+ H
Sbjct: 177 SSFACPECRESITDRKYTINRV--------LANLAKKAACTPVTPVEKKTRPLEKCSEHD 228

Query: 266 NKTR 277
+ +
Sbjct: 229 ERLK 232


>sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 protein
OS=Homo sapiens GN=TNRC18 PE=1 SV=3
Length = 2968

Score = 31.6 bits (70), Expect = 4.0
Identities = 27/89 (30%), Positives = 40/89 (44%)
Frame = +2

Query: 38 STAMASSLLSARPHLSSSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFL 217
S++ +SS S+ SSS +S SSS S+ S + ++S SS A +
Sbjct: 2633 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAG 2692

Query: 218 PVECSSRPQKKCTAHHNKTRPKKHNPSDK 304
P ++ P K T K RP H+P K
Sbjct: 2693 PSAQAALPTK-ATKQAGKARPSAHSPGKK 2720


>sp|P39712|FLO9_YEAST Flocculation protein FLO9 OS=Saccharomyces
cerevisiae GN=FLO9 PE=3 SV=2
Length = 1322

Score = 31.6 bits (70), Expect = 4.0
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +2

Query: 2 VLCVDEAPSFVISTAMASSLLSARPHLSSSFCCPTSQLCISSS--GSTFVSIAHFKQESP 175
V+ + S VIS+++ SSL+++ P +SSSF ISS ST S + + S
Sbjct: 897 VISSSDTSSLVISSSVTSSLVTSSPVISSSF--------ISSPVISSTTTSASILSESSK 948

Query: 176 LSSLQSKAESAGFLPVECSSRPQKKCTAHHNKTRPK 283
S + + + ++G E S ++ + PK
Sbjct: 949 SSVIPTSSSTSGSSESETGSASSASSSSSISSESPK 984


tr_hit_id A9SG03
Definition tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 53
Score (bit) 60.8
E-value 7.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK961481|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_D24, 5'
(678 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella paten... 61 7e-08
tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea... 60 2e-07
tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medic... 56 2e-06
tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Popul... 53 2e-05
tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 52 3e-05
tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza... 52 3e-05
tr|B6TUI7|B6TUI7_MAIZE Plastid-specific ribosomal protein 6 OS=Z... 49 3e-04
tr|B6SX84|B6SX84_MAIZE Plastid-specific ribosomal protein 6 OS=Z... 49 3e-04
tr|A7Q1S1|A7Q1S1_VITVI Chromosome chr7 scaffold_44, whole genome... 47 8e-04
tr|A4S2B2|A4S2B2_OSTLU Predicted protein OS=Ostreococcus lucimar... 40 0.10
tr|B6KT57|B6KT57_TOXGO Putative uncharacterized protein OS=Toxop... 36 2.0
tr|B6KG68|B6KG68_TOXGO Putative uncharacterized protein OS=Toxop... 35 4.4
tr|Q6VBJ4|Q6VBJ4_CANGA Epa5p OS=Candida glabrata GN=EPA5 PE=4 SV=1 35 4.4
tr|B4JDI7|B4JDI7_DROGR GH11196 OS=Drosophila grimshawi GN=GH1119... 34 7.4

>tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_164709 PE=4 SV=1
Length = 315

Score = 60.8 bits (146), Expect = 7e-08
Identities = 32/53 (60%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
Frame = +2

Query: 170 SPLSSLQSKAES-----AGFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 313
+PLSS S S A L +ECSS PQKK TA HNKTRPKK NP DKNR+
Sbjct: 14 TPLSSAVSSRSSVSNNGASLLRIECSSHPQKKSTAGHNKTRPKKSNPYDKNRQ 66


>tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 137

Score = 59.7 bits (143), Expect = 2e-07
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2

Query: 215 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 313
L +ECSSRP+KK TAHH KTRPKKH P DKNRK
Sbjct: 50 LIIECSSRPRKKATAHHVKTRPKKHQPYDKNRK 82


>tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=4 SV=1
Length = 104

Score = 55.8 bits (133), Expect = 2e-06
Identities = 31/65 (47%), Positives = 39/65 (60%)
Frame = +2

Query: 119 ISSSGSTFVSIAHFKQESPLSSLQSKAESAGFLPVECSSRPQKKCTAHHNKTRPKKHNPS 298
+SS VSIA ++ + G L +ECSSRPQKK TAHH KTRP+K + S
Sbjct: 4 VSSIFGCGVSIAPNSLRKKAIGIERRNVCGGLL-IECSSRPQKKSTAHHMKTRPRKSSLS 62

Query: 299 DKNRK 313
D+NRK
Sbjct: 63 DRNRK 67


>tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 123

Score = 53.1 bits (126), Expect = 2e-05
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = +2

Query: 209 GFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 313
G + +ECSSRPQKK TAHH KTRP+K P D RK
Sbjct: 42 GGMSIECSSRPQKKATAHHRKTRPRKSQPWDIKRK 76


>tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp.
japonica GN=Os11g0550800 PE=2 SV=2
Length = 127

Score = 52.4 bits (124), Expect = 3e-05
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +2

Query: 215 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 313
L VECSSRPQKK T HH KTRPKK P D+ R+
Sbjct: 39 LAVECSSRPQKKATKHHMKTRPKKSQPWDRKRR 71


>tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_032917 PE=4 SV=1
Length = 374

Score = 52.4 bits (124), Expect = 3e-05
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +2

Query: 215 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 313
L VECSSRPQKK T HH KTRPKK P D+ R+
Sbjct: 39 LAVECSSRPQKKATKHHMKTRPKKSQPWDRKRR 71


>tr|B6TUI7|B6TUI7_MAIZE Plastid-specific ribosomal protein 6 OS=Zea
mays PE=2 SV=1
Length = 123

Score = 48.9 bits (115), Expect = 3e-04
Identities = 23/33 (69%), Positives = 24/33 (72%)
Frame = +2

Query: 215 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 313
L VECSSRPQKK T HH KTRPKK P D R+
Sbjct: 45 LAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 77


>tr|B6SX84|B6SX84_MAIZE Plastid-specific ribosomal protein 6 OS=Zea
mays PE=2 SV=1
Length = 121

Score = 48.9 bits (115), Expect = 3e-04
Identities = 23/33 (69%), Positives = 24/33 (72%)
Frame = +2

Query: 215 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 313
L VECSSRPQKK T HH KTRPKK P D R+
Sbjct: 43 LAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 75


>tr|A7Q1S1|A7Q1S1_VITVI Chromosome chr7 scaffold_44, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00028574001
PE=4 SV=1
Length = 108

Score = 47.4 bits (111), Expect = 8e-04
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +2

Query: 209 GFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 313
G +ECSSRPQKK T+HH KTRP+K P D R+
Sbjct: 33 GAAVIECSSRPQKKGTSHHMKTRPRKTQPWDIKRR 67


>tr|A4S2B2|A4S2B2_OSTLU Predicted protein OS=Ostreococcus
lucimarinus (strain CCE9901) GN=OSTLU_33388 PE=4 SV=1
Length = 56

Score = 40.4 bits (93), Expect = 0.10
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +2

Query: 221 VECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 313
V+ + +KK T H TRPKKH PSD+NRK
Sbjct: 5 VKAARHVRKKATKGHTDTRPKKHRPSDRNRK 35