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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961494
Clone id TST39A01NGRL0010_E13
Library
Length 657
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_E13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AAAAGGGAAAGCGGAAATGTAGCAGCGGGAACTCCAGAGTTTGTTGGCCGAGTCGAGTTT
TCAATGCTGCAGGGGCCTGTAGGTTGGATTTTCTCATCACGTGTGAAGTCTACGGGCGCA
AAAGGGTCTGATGGGTAGAGCTGCTAAAGCTGGGTCGGCAGAGCAGATGGCGAGTTCTTT
ATGTTAATCCTGCAATCTCTGCATTCACCAGGTTACTTGTTGCGAAGGGTGTTGCCCGGC
AGAAATCAGCATGGTTTTGAGGGTCAAATTTTGACAGACTGAGGGTTTACATACTCGAGT
AGGTTCACTTTTTCTGCCAATTAAGAGTTTTTAGCTACTAAGCGGTGAAGAATCCCTCTA
CATTCCTGCATTAACATGTTAGAAGAACAGCTTAGCCAAGAAGGCAATGCACATTAGAAC
CCCTTATCTCTCATACCTTGAAGCTACCTGATCACGATGGCTGGCCCTTGGCATCATACC
TTTTTAACAGAATTGGAAGATGTCCAGGCTTTGAATGAGTGCAACGAATTCAATAACCAA
GGGCCGAACTCTGGAGGTCAGGTTACTGAAGCTCGTATATCAGCAAGACGGCTGCATAAG
GCTGATCGGGAGAAGCTGAGACGGGATAAATTGAACGAGCAGTTTACAGAGCTTGCA
■■Homology search results ■■ -
sp_hit_id Q9LT23
Definition sp|Q9LT23|BH121_ARATH Transcription factor bHLH121 OS=Arabidopsis thaliana
Align length 26
Score (bit) 39.3
E-value 0.019
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961494|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_E13, 5'
         (657 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LT23|BH121_ARATH Transcription factor bHLH121 OS=Arabidopsi...    39   0.019
sp|Q8W2F2|BH011_ARATH Transcription factor bHLH11 OS=Arabidopsis...    37   0.071
sp|Q9C682|BH115_ARATH Transcription factor bHLH115 OS=Arabidopsi...    32   3.0  
sp|Q9SN74|BH047_ARATH Transcription factor bHLH47 OS=Arabidopsis...    32   3.0  
sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus GN=I...    31   5.0  
sp|B1V8K7|GLAA_STRGU Alpha-1,3-galactosidase A OS=Streptomyces g...    31   5.0  
sp|Q8XWQ8|AMPA_RALSO Probable cytosol aminopeptidase OS=Ralstoni...    30   8.5  
sp|Q54SU1|KBP_DICDI Protein KBP homolog OS=Dictyostelium discoid...    30   8.6  
sp|Q8L467|BH104_ARATH Transcription factor bHLH104 OS=Arabidopsi...    30   8.6  
sp|Q9LTC7|BH034_ARATH Transcription factor bHLH34 OS=Arabidopsis...    30   8.6  

>sp|Q9LT23|BH121_ARATH Transcription factor bHLH121 OS=Arabidopsis
           thaliana GN=BHLH121 PE=2 SV=1
          Length = 337

 Score = 39.3 bits (90), Expect = 0.019
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +1

Query: 577 ISARRLHKADREKLRRDKLNEQFTEL 654
           +SAR+  KA REKLRR+KLNE F EL
Sbjct: 56  VSARKSQKAGREKLRREKLNEHFVEL 81


>sp|Q8W2F2|BH011_ARATH Transcription factor bHLH11 OS=Arabidopsis
           thaliana GN=BHLH11 PE=2 SV=2
          Length = 286

 Score = 37.4 bits (85), Expect = 0.071
 Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +1

Query: 532 NNQGPNSGG--QVTEARISARRLHKADREKLRRDKLNEQFTEL 654
           ++ G N  G   V E +  A    KA+REKLRRDKL EQF EL
Sbjct: 25  SSSGQNLRGAEMVVEVKKEAVCSQKAEREKLRRDKLKEQFLEL 67


>sp|Q9C682|BH115_ARATH Transcription factor bHLH115 OS=Arabidopsis
           thaliana GN=BHLH115 PE=2 SV=1
          Length = 226

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +1

Query: 598 KADREKLRRDKLNEQFTELA 657
           KA REK RRD+LN++FTEL+
Sbjct: 71  KACREKQRRDRLNDKFTELS 90


>sp|Q9SN74|BH047_ARATH Transcription factor bHLH47 OS=Arabidopsis
           thaliana GN=BHLH47 PE=2 SV=1
          Length = 240

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +1

Query: 586 RRLHKADREKLRRDKLNEQFTELA 657
           +R++KA RE+L+R+ LNE F ELA
Sbjct: 28  KRINKAVRERLKREHLNELFIELA 51


>sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus
           GN=ITGA3 PE=1 SV=2
          Length = 1066

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 211 LVNAEIAGLT*RTRHLLCRPSFSSSTHQTLLRP*TSHVMRKSNLQAPAALKT 56
           L+  E+ G+T  TR L  +   S+S+HQ  L+P T  +     LQA  +L T
Sbjct: 717 LIAFEVIGVTLHTRDLKAQLQLSTSSHQDNLQPMTLILQVDYTLQASLSLMT 768


>sp|B1V8K7|GLAA_STRGU Alpha-1,3-galactosidase A OS=Streptomyces
           griseoplanus GN=glaA PE=1 SV=1
          Length = 727

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 21/55 (38%), Positives = 23/55 (41%)
 Frame = -2

Query: 176 NSPSALPTQL*QLYPSDPFAPVDFTRDEKIQPTGPCSIENSTRPTNSGVPAATFP 12
           N  S  P    Q YP D    VD  R     P     + + T PT SGVPA T P
Sbjct: 378 NETSGFP----QFYPGDTIELVD-KRTMLAAPGATAKVVSVTGPTGSGVPAGTDP 427


>sp|Q8XWQ8|AMPA_RALSO Probable cytosol aminopeptidase OS=Ralstonia
           solanacearum GN=pepA PE=3 SV=1
          Length = 506

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 33  SRVCWPSRVFNAAGACRLDFLITCEVYGRKRV*WVELLKLG 155
           S +C P+ + N A     DF +  EV GRK+   +E LK+G
Sbjct: 206 SNICTPTYLANTARQIAKDFKLKVEVLGRKQ---IEALKMG 243


>sp|Q54SU1|KBP_DICDI Protein KBP homolog OS=Dictyostelium discoideum
           GN=kbp PE=3 SV=1
          Length = 626

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +1

Query: 481 FLTELEDVQALNECNEFNNQGPNSGGQ----VTEARISARRLHKADREKLRRDKL 633
           FL    D++ LN C+  NN   N+  +      +  +S+  L    +EK + DKL
Sbjct: 279 FLHFFRDIENLNHCHRVNNNNKNNNNENDIDFVQGGLSSISLSDKQKEKEKEDKL 333


>sp|Q8L467|BH104_ARATH Transcription factor bHLH104 OS=Arabidopsis
           thaliana GN=BHLH104 PE=2 SV=1
          Length = 283

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +1

Query: 598 KADREKLRRDKLNEQFTELA 657
           KA RE+LRR+KLNE+F +L+
Sbjct: 135 KACRERLRREKLNERFMDLS 154


>sp|Q9LTC7|BH034_ARATH Transcription factor bHLH34 OS=Arabidopsis
           thaliana GN=BHLH34 PE=2 SV=1
          Length = 320

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +1

Query: 598 KADREKLRRDKLNEQFTELA 657
           KA REKLRR+KLN++F +L+
Sbjct: 167 KACREKLRREKLNDKFMDLS 186
tr_hit_id A9RVD9
Definition tr|A9RVD9|A9RVD9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 39
Score (bit) 48.5
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961494|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_E13, 5'
         (657 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RVD9|A9RVD9_PHYPA Predicted protein OS=Physcomitrella paten...    49   4e-04
tr|A9SY51|A9SY51_PHYPA Predicted protein OS=Physcomitrella paten...    48   5e-04
tr|Q0E1J5|Q0E1J5_ORYSJ Os02g0433200 protein OS=Oryza sativa subs...    47   0.001
tr|B6UE48|B6UE48_MAIZE Helix-loop-helix DNA-binding domain conta...    45   0.005
tr|A7QDX7|A7QDX7_VITVI Chromosome chr4 scaffold_83, whole genome...    45   0.005
tr|A5B1V8|A5B1V8_VITVI Putative uncharacterized protein OS=Vitis...    45   0.005
tr|Q67U21|Q67U21_ORYSJ Os02g0433600 protein OS=Oryza sativa subs...    44   0.007
tr|A7P863|A7P863_VITVI Chromosome chr3 scaffold_8, whole genome ...    44   0.009
tr|A5BHC0|A5BHC0_VITVI Putative uncharacterized protein OS=Vitis...    44   0.009
tr|A9SV25|A9SV25_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.044
tr|A5B432|A5B432_VITVI Putative uncharacterized protein OS=Vitis...    42   0.044
tr|B8AGP0|B8AGP0_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.057
tr|B8A2P8|B8A2P8_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.48 
tr|B6T4L8|B6T4L8_MAIZE Amelogenin like protein OS=Zea mays PE=2 ...    38   0.48 
tr|Q6XNP2|Q6XNP2_ORYSJ Putative transcription factor bHLH OS=Ory...    36   2.4  
tr|Q69V10|Q69V10_ORYSJ Os07g0628500 protein OS=Oryza sativa subs...    36   2.4  
tr|Q2R1K8|Q2R1K8_ORYSJ Helix-loop-helix DNA-binding domain conta...    36   2.4  
tr|B8BLB2|B8BLB2_ORYSI Putative uncharacterized protein OS=Oryza...    36   2.4  
tr|B8B4W8|B8B4W8_ORYSI Putative uncharacterized protein OS=Oryza...    36   2.4  
tr|B7FJ19|B7FJ19_MEDTR Putative uncharacterized protein OS=Medic...    36   2.4  
tr|A3CCS5|A3CCS5_ORYSJ Putative uncharacterized protein OS=Oryza...    36   2.4  
tr|A3BMG0|A3BMG0_ORYSJ Putative uncharacterized protein OS=Oryza...    36   2.4  
tr|Q32SF7|Q32SF7_HORVD Putative amelogenin like protein OS=Horde...    35   3.1  
tr|B4FPI9|B4FPI9_MAIZE Putative uncharacterized protein OS=Zea m...    35   3.1  
tr|B3SK14|B3SK14_ARAHA At4g36060-like protein (Fragment) OS=Arab...    35   4.1  
tr|B5AYF5|B5AYF5_TOBAC Basic helix-loop-helix protein OS=Nicotia...    34   7.0  
tr|B4FXQ6|B4FXQ6_MAIZE Putative uncharacterized protein OS=Zea m...    34   7.0  
tr|Q7XXQ5|Q7XXQ5_ORYSJ BHLH transcription factor OS=Oryza sativa...    34   9.1  
tr|B8B796|B8B796_ORYSI Putative uncharacterized protein OS=Oryza...    34   9.1  
tr|A7PMT1|A7PMT1_VITVI Chromosome chr14 scaffold_21, whole genom...    34   9.1  

>tr|A9RVD9|A9RVD9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_71136 PE=4 SV=1
          Length = 514

 Score = 48.5 bits (114), Expect = 4e-04
 Identities = 24/39 (61%), Positives = 28/39 (71%)
 Frame = +1

Query: 541 GPNSGGQVTEARISARRLHKADREKLRRDKLNEQFTELA 657
           GP+  G       S R++HKADREKLRRD+LNEQF ELA
Sbjct: 99  GPSENGDAA----SVRKVHKADREKLRRDRLNEQFGELA 133


>tr|A9SY51|A9SY51_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_167103 PE=4 SV=1
          Length = 645

 Score = 48.1 bits (113), Expect = 5e-04
 Identities = 24/39 (61%), Positives = 27/39 (69%)
 Frame = +1

Query: 541 GPNSGGQVTEARISARRLHKADREKLRRDKLNEQFTELA 657
           GP   G       S R++HKADREKLRRD+LNEQF ELA
Sbjct: 195 GPTENGDTA----SVRKVHKADREKLRRDRLNEQFGELA 229


>tr|Q0E1J5|Q0E1J5_ORYSJ Os02g0433200 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0433200 PE=4 SV=1
          Length = 105

 Score = 47.0 bits (110), Expect = 0.001
 Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 3/41 (7%)
 Frame = +1

Query: 541 GPNSGGQV---TEARISARRLHKADREKLRRDKLNEQFTEL 654
           GP  GG+    T+  I+ R++ KADREK+RRD+LNEQF EL
Sbjct: 32  GPFLGGKTECKTQGSIATRKVQKADREKMRRDRLNEQFQEL 72


>tr|B6UE48|B6UE48_MAIZE Helix-loop-helix DNA-binding domain
           containing protein OS=Zea mays PE=2 SV=1
          Length = 316

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 4/42 (9%)
 Frame = +1

Query: 541 GPNSGGQVTEAR----ISARRLHKADREKLRRDKLNEQFTEL 654
           G + G Q  E +     SAR++ KADREK+RRDKLNEQF +L
Sbjct: 11  GTHHGSQRAECKSQGSTSARKVQKADREKMRRDKLNEQFQDL 52


>tr|A7QDX7|A7QDX7_VITVI Chromosome chr4 scaffold_83, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036779001
           PE=4 SV=1
          Length = 292

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 10/47 (21%)
 Frame = +1

Query: 544 PNSGGQVTEAR----------ISARRLHKADREKLRRDKLNEQFTEL 654
           P+S  ++ EAR          I+AR++ KADREKLRRD+LNE F EL
Sbjct: 27  PSSNNRLPEARQRTEVEAKDSIAARKVQKADREKLRRDRLNEHFLEL 73


>tr|A5B1V8|A5B1V8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019798 PE=4 SV=1
          Length = 332

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 10/47 (21%)
 Frame = +1

Query: 544 PNSGGQVTEAR----------ISARRLHKADREKLRRDKLNEQFTEL 654
           P+S  ++ EAR          I+AR++ KADREKLRRD+LNE F EL
Sbjct: 26  PSSNNRLPEARQRTEVEAKDSIAARKVQKADREKLRRDRLNEHFLEL 72


>tr|Q67U21|Q67U21_ORYSJ Os02g0433600 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0065F08.2 PE=2 SV=1
          Length = 343

 Score = 44.3 bits (103), Expect = 0.007
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = +1

Query: 565 TEARISARRLHKADREKLRRDKLNEQFTEL 654
           T+  I+ R++ KADREK+RRD+LNEQF EL
Sbjct: 33  TQGSIATRKVQKADREKMRRDRLNEQFQEL 62


>tr|A7P863|A7P863_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036056001
           PE=4 SV=1
          Length = 329

 Score = 43.9 bits (102), Expect = 0.009
 Identities = 19/26 (73%), Positives = 24/26 (92%)
 Frame = +1

Query: 577 ISARRLHKADREKLRRDKLNEQFTEL 654
           ++AR++ KADREKLRRD+LNEQF EL
Sbjct: 43  VTARKVQKADREKLRRDRLNEQFIEL 68


>tr|A5BHC0|A5BHC0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018451 PE=4 SV=1
          Length = 378

 Score = 43.9 bits (102), Expect = 0.009
 Identities = 19/26 (73%), Positives = 24/26 (92%)
 Frame = +1

Query: 577 ISARRLHKADREKLRRDKLNEQFTEL 654
           ++AR++ KADREKLRRD+LNEQF EL
Sbjct: 92  VTARKVQKADREKLRRDRLNEQFIEL 117


>tr|A9SV25|A9SV25_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166708 PE=4 SV=1
          Length = 332

 Score = 41.6 bits (96), Expect = 0.044
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +1

Query: 583 ARRLHKADREKLRRDKLNEQFTELA 657
           AR+L KADRE+LRRD LNEQF +LA
Sbjct: 21  ARKLQKADRERLRRDHLNEQFAKLA 45