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NBDC - LSDB Archive
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DK961539
Clone id TST39A01NGRL0010_G12
Library
Length 630
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_G12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGATACAAGAGATGAAAAACCCAATACAAAAAGTCACCTTTCAATTTATCATGACCTGCA
GTCTGCCAGAATCATTCGCTATTGTTCCATTGGTTTCCAAATGGATATATAGATTCGAAA
TCTCAAAGAATAAGAATAAAAAAATATTACACACCGTTATGGCCTATCCATATAAGATAG
AAGAAAAAGAAAAAAAATATTATTCCAAAGAAAAACAGAAAGTCATTCTTCAGAGATTAC
TGAGTACAAGTGCACATCTAGGCTATCAAGGACCCTCTACCTTATACTATCAAAGATATT
TATATGGATTTAGACATAAAAGGGCTATTATCGATTTAGAAAAAACACTTTTCTTATTGA
AGATTGCTTGTAATATGATTAAATCTATTATTCATAAAGGAGGCCATTTACTGTTAGTAA
ATACTGATCCTTTATGCAATGAAATAATAACAAAAATGGCAAAAAAAACCAATCAAAATT
ATATTAATTCTAAATGGATTGGTGGTTTTTTAACTAATTGGGAACATATGAAACATGAGA
AACGCTTAAAATCTTCATCCACGCAGCACTCTAGCCCACGTTTATTAAAGATGCAAAGAT
ATTTTGAGGGACTGACAACACGCCAAATTC
■■Homology search results ■■ -
sp_hit_id P26864
Definition sp|P26864|RT02_MARPO Ribosomal protein S2, mitochondrial OS=Marchantia polymorpha
Align length 149
Score (bit) 150.0
E-value 5.0e-36
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961539|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_G12, 5'
         (630 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26864|RT02_MARPO Ribosomal protein S2, mitochondrial OS=Marc...   150   5e-36
sp|A0KHG3|RS2_AERHH 30S ribosomal protein S2 OS=Aeromonas hydrop...    80   9e-15
sp|P35014|RR2_GALSU 30S ribosomal protein S2, chloroplastic OS=G...    79   2e-14
sp|A4SQI2|RS2_AERS4 30S ribosomal protein S2 OS=Aeromonas salmon...    79   3e-14
sp|A0L8Q5|RS2_MAGSM 30S ribosomal protein S2 OS=Magnetococcus sp...    76   1e-13
sp|Q8K9T0|RS2_BUCAP 30S ribosomal protein S2 OS=Buchnera aphidic...    76   1e-13
sp|A5V3G2|RS2_SPHWW 30S ribosomal protein S2 OS=Sphingomonas wit...    75   2e-13
sp|Q68XV5|RS2_RICTY 30S ribosomal protein S2 OS=Rickettsia typhi...    74   5e-13
sp|Q8UFM3|RS2_AGRT5 30S ribosomal protein S2 OS=Agrobacterium tu...    74   5e-13
sp|Q15WG3|RS2_PSEA6 30S ribosomal protein S2 OS=Pseudoalteromona...    74   6e-13
sp|Q6FZN0|RS2_BARQU 30S ribosomal protein S2 OS=Bartonella quint...    74   6e-13
sp|P30389|RR2_EUGGR 30S ribosomal protein S2, chloroplastic OS=E...    74   6e-13
sp|Q3Z9H6|RS2_DEHE1 30S ribosomal protein S2 OS=Dehalococcoides ...    74   8e-13
sp|Q057T1|RS2_BUCCC 30S ribosomal protein S2 OS=Buchnera aphidic...    73   1e-12
sp|Q31G43|RS2_THICR 30S ribosomal protein S2 OS=Thiomicrospira c...    73   1e-12
sp|B1LTQ8|RS2_METRJ 30S ribosomal protein S2 OS=Methylobacterium...    73   1e-12
sp|Q11IJ8|RS2_MESSB 30S ribosomal protein S2 OS=Mesorhizobium sp...    73   1e-12
sp|Q3ZZC1|RS2_DEHSC 30S ribosomal protein S2 OS=Dehalococcoides ...    73   1e-12
sp|A5FS79|RS2_DEHSB 30S ribosomal protein S2 OS=Dehalococcoides ...    73   1e-12
sp|Q9KPV2|RS2_VIBCH 30S ribosomal protein S2 OS=Vibrio cholerae ...    72   2e-12
sp|A5F607|RS2_VIBC3 30S ribosomal protein S2 OS=Vibrio cholerae ...    72   2e-12
sp|Q9ZE61|RS2_RICPR 30S ribosomal protein S2 OS=Rickettsia prowa...    72   2e-12
sp|Q6FA53|RS2_ACIAD 30S ribosomal protein S2 OS=Acinetobacter sp...    72   2e-12
sp|Q9GCB9|RT02_ARATH Ribosomal protein S2, mitochondrial OS=Arab...    72   2e-12
sp|Q98MB2|RS2_RHILO 30S ribosomal protein S2 OS=Rhizobium loti G...    72   2e-12
sp|Q1MH54|RS2_RHIL3 30S ribosomal protein S2 OS=Rhizobium legumi...    72   2e-12
sp|Q2K8Y7|RS2_RHIEC 30S ribosomal protein S2 OS=Rhizobium etli (...    72   2e-12
sp|B1ZLB5|RS2_METPB 30S ribosomal protein S2 OS=Methylobacterium...    72   2e-12
sp|Q8D2G2|RS2_WIGBR 30S ribosomal protein S2 OS=Wigglesworthia g...    72   3e-12
sp|A9W4G3|RS2_METEP 30S ribosomal protein S2 OS=Methylobacterium...    72   3e-12

>sp|P26864|RT02_MARPO Ribosomal protein S2, mitochondrial
           OS=Marchantia polymorpha GN=RPS2 PE=3 SV=2
          Length = 237

 Score =  150 bits (379), Expect = 5e-36
 Identities = 80/149 (53%), Positives = 103/149 (69%), Gaps = 13/149 (8%)
 Frame = +3

Query: 222 VILQRLLSTSAHLGYQGPSTLYYQRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSIIHKG 401
           +++Q+LLST+A+LG++ P T  +Q YLYGFR++ AIIDLEKTL  L+  CN+I SII   
Sbjct: 7   LVIQKLLSTNAYLGHRIP-TSDFQGYLYGFRNEMAIIDLEKTLICLRRTCNLIGSIISAK 65

Query: 402 GHLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNWEHMKHEKRLKSSSTQHSS-- 575
           GHLLLVNT+P  N+II +MAKKTNQ+YIN KWIGGFLTNW+HMK  K+     + H +  
Sbjct: 66  GHLLLVNTNPEYNKIIQQMAKKTNQSYINHKWIGGFLTNWKHMKKVKKHFQDFSAHPNLK 125

Query: 576 -----------PRLLKMQRYFEGLTTRQI 629
                      PR  KMQ+ FEG+ T  I
Sbjct: 126 DAFTSSPFDYFPRFKKMQKCFEGIMTHNI 154


>sp|A0KHG3|RS2_AERHH 30S ribosomal protein S2 OS=Aeromonas
           hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
           9240) GN=rpsB PE=3 SV=1
          Length = 242

 Score = 80.1 bits (196), Expect = 9e-15
 Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 5/141 (3%)
 Frame = +3

Query: 222 VILQRLLSTSAHLGYQGPSTLYY----QRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSI 389
           V ++ +L    H G+Q   T Y+    + Y++G R K  II+LEKT+ +   A N I S+
Sbjct: 4   VSMRDMLQAGVHFGHQ---TRYWNPKMKSYIFGARSKVHIINLEKTVPMFDDAMNFISSV 60

Query: 390 IHKGGHLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNWEHMKHE-KRLKSSSTQ 566
             K G +L V T    +E + + A++ +Q Y+N +W+GG LTNW+ ++   KRLK   TQ
Sbjct: 61  AAKKGKVLFVGTKRAASEAVKEAAERCDQFYVNHRWLGGMLTNWKTVRQSIKRLKDLETQ 120

Query: 567 HSSPRLLKMQRYFEGLTTRQI 629
                  K+ +    + TR++
Sbjct: 121 SQDGTFDKLTKKEALMRTREM 141


>sp|P35014|RR2_GALSU 30S ribosomal protein S2, chloroplastic
           OS=Galdieria sulphuraria GN=rps2 PE=3 SV=1
          Length = 233

 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 17/148 (11%)
 Frame = +3

Query: 222 VILQRLLSTSAHLGYQ----GPSTLYYQRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSI 389
           V L  LL+   HLG++     P  +    ++Y  R+K  IIDL +T FLL  AC+ +K +
Sbjct: 6   VTLSELLAARVHLGHRFNKWNPKMV---SFIYAERNKVHIIDLVQTAFLLGEACDYVKLL 62

Query: 390 IHKGGHLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNWEHMKHE----KRLKSS 557
             KG   L V T    N I+ + A++ N  YIN +W+GG LTNW  +K      ++ +S 
Sbjct: 63  AKKGKKFLFVGTRQELNTILAEEAERCNSFYINQRWLGGLLTNWVTIKSRVQALEKKESE 122

Query: 558 STQHSSPR---------LLKMQRYFEGL 614
              +S P+         L K++RYF G+
Sbjct: 123 GFFNSLPKKESARLKKELDKLRRYFNGI 150


>sp|A4SQI2|RS2_AERS4 30S ribosomal protein S2 OS=Aeromonas
           salmonicida (strain A449) GN=rpsB PE=3 SV=1
          Length = 242

 Score = 78.6 bits (192), Expect = 3e-14
 Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
 Frame = +3

Query: 222 VILQRLLSTSAHLGYQGPSTLYY----QRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSI 389
           V ++ +L    H G+Q   T Y+    + Y++G R K  II+LEKT+ +   A N I S+
Sbjct: 4   VSMRDMLQAGVHFGHQ---TRYWNPKMKSYIFGARSKVHIINLEKTVPMFDDAMNFISSV 60

Query: 390 IHKGGHLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNWEHMKHE-KRLKSSSTQ 566
             K G +L V T    +E +   A + +Q Y+N +W+GG LTNW+ ++   KRLK   TQ
Sbjct: 61  AAKKGKVLFVGTKRAASEAVKDAAGRCDQFYVNHRWLGGMLTNWKTVRQSIKRLKDLETQ 120

Query: 567 HSSPRLLKMQRYFEGLTTRQI 629
                  K+ +    + TR++
Sbjct: 121 SQDGTFEKLTKKEALMRTREM 141


>sp|A0L8Q5|RS2_MAGSM 30S ribosomal protein S2 OS=Magnetococcus sp.
           (strain MC-1) GN=rpsB PE=3 SV=1
          Length = 262

 Score = 76.3 bits (186), Expect = 1e-13
 Identities = 42/135 (31%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
 Frame = +3

Query: 228 LQRLLSTSAHLGYQGPS-TLYYQRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSIIHKGG 404
           ++ LL    H G+Q        +R+++G R+   II+L+K++ +L+ ACN ++  +  GG
Sbjct: 6   VRELLEAGFHFGHQTKRWNPKMKRHIFGARNGVHIINLQKSVVMLRDACNFVRDTVQGGG 65

Query: 405 HLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNWEHMKHE-KRLKSSSTQHSSPR 581
            +L V T     E+++  A++T Q Y+N +W+GG LTNW  ++   +RLK          
Sbjct: 66  TVLFVGTKRQAVELVSAEARRTGQFYVNHRWLGGTLTNWRTIQGSIRRLKEIDK------ 119

Query: 582 LLKMQRYFEGLTTRQ 626
            +++   FE LT R+
Sbjct: 120 -MRVDGTFEALTKRE 133


>sp|Q8K9T0|RS2_BUCAP 30S ribosomal protein S2 OS=Buchnera aphidicola
           subsp. Schizaphis graminum GN=rpsB PE=3 SV=1
          Length = 244

 Score = 76.3 bits (186), Expect = 1e-13
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
 Frame = +3

Query: 222 VILQRLLSTSAHLGYQGPSTLYY----QRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSI 389
           V ++ +L    H G+Q   T Y+    + +++G R+K  II+LEKTL +   A + +K I
Sbjct: 4   VSMRDMLKAGVHFGHQ---TRYWNPKMKPFIFGSRNKVHIINLEKTLPMFNFALSELKKI 60

Query: 390 IHKGGHLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNWEHMKHE-KRLKSSSTQ 566
             K G +L V T    ++ I + A   NQ Y+N +W+GG LTNW+ ++   KRLK   T+
Sbjct: 61  SLKKGKILFVGTKRAASKKIKETALNCNQFYVNHRWLGGMLTNWKTVRQSIKRLKDLETE 120

Query: 567 HSSPRLLKMQRYFEGLTTRQI 629
                  K+ +    + TR++
Sbjct: 121 SQDGTFSKITKKEALIRTREL 141


>sp|A5V3G2|RS2_SPHWW 30S ribosomal protein S2 OS=Sphingomonas
           wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsB
           PE=3 SV=1
          Length = 250

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
 Frame = +3

Query: 222 VILQRLLSTSAHLGYQGPS-TLYYQRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSIIHK 398
           V +Q LL   AH G+Q        + YL+G R+   IIDL +T+ L+  A ++I   +  
Sbjct: 6   VSMQALLDAGAHFGHQTHRWNPKMKPYLFGDRNGIHIIDLSQTVPLMARALDLISQTVQH 65

Query: 399 GGHLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNWEHMKHE-KRLKSSSTQHS 572
           GG +L V T     E I + A+++ Q+Y+N +W+GG LTNW+ + +  KR K+   Q S
Sbjct: 66  GGKVLFVGTKRQAQEPIAEAARRSGQHYVNHRWLGGMLTNWKTISNSIKRFKALEEQLS 124


>sp|Q68XV5|RS2_RICTY 30S ribosomal protein S2 OS=Rickettsia typhi
           GN=rpsB PE=3 SV=1
          Length = 295

 Score = 74.3 bits (181), Expect = 5e-13
 Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
 Frame = +3

Query: 228 LQRLLSTSAHLGYQGPS-TLYYQRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSIIHKGG 404
           ++ LL    H G++          Y+YG R    IIDL ++  L+ +A N I   + K G
Sbjct: 9   IKELLDAGVHFGHKTSRWNPKMASYIYGERDDVHIIDLRQSAALMSVALNAIYETVKKDG 68

Query: 405 HLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNWEHM--------KHEKRLKSSS 560
            +L V+T    ++II + A+K  Q Y+N++W+GG LTNW+ +        K EK L+S  
Sbjct: 69  KILFVSTKIQASDIIAEYAEKCGQYYVNNRWLGGMLTNWKTIACSIEKLEKLEKTLESEE 128

Query: 561 TQ--HSSPRLLKMQR 599
           T+  ++   +L M R
Sbjct: 129 TRVCYTKKEILDMSR 143


>sp|Q8UFM3|RS2_AGRT5 30S ribosomal protein S2 OS=Agrobacterium
           tumefaciens (strain C58 / ATCC 33970) GN=rpsB PE=3 SV=1
          Length = 255

 Score = 74.3 bits (181), Expect = 5e-13
 Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 9/138 (6%)
 Frame = +3

Query: 228 LQRLLSTSAHLGYQGPS-TLYYQRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSIIHKGG 404
           +++LL    H G+Q        + Y++G R+   IIDL +T+ +L  A  ++   + +GG
Sbjct: 8   MRQLLEAGVHFGHQTHRWNPKMKPYIFGDRNNIHIIDLAQTVPMLSRALQVVSDTVARGG 67

Query: 405 HLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNWEHM--------KHEKRLKSSS 560
            +L V T    +EII   AK++ Q Y+NS+W+GG +TNW+ +        K ++ L S  
Sbjct: 68  RVLFVGTKRQASEIIADSAKRSAQYYVNSRWLGGMMTNWKTISNSIQRLRKVDEILNSEG 127

Query: 561 TQHSSPRLLKMQRYFEGL 614
           + +S    L ++R  E L
Sbjct: 128 SGYSKKERLTLEREREKL 145


>sp|Q15WG3|RS2_PSEA6 30S ribosomal protein S2 OS=Pseudoalteromonas
           atlantica (strain T6c / BAA-1087) GN=rpsB PE=3 SV=1
          Length = 243

 Score = 73.9 bits (180), Expect = 6e-13
 Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
 Frame = +3

Query: 222 VILQRLLSTSAHLGYQGPSTLYY----QRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSI 389
           V ++ +L    H G+Q   T Y+    + +++G R+K  II+LEKT+ L   A N I S+
Sbjct: 4   VSMRDMLQAGVHFGHQ---TRYWNPKMKPFIFGARNKVHIINLEKTVPLFNNALNYIGSV 60

Query: 390 IHKGGHLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNWEHMKHE-KRLKSSSTQ 566
             K G +L V T    ++ +   A K +Q Y+N +W+GG LTNW+ ++   KRLK    Q
Sbjct: 61  ASKKGKILFVGTKRAASDSVRDAAVKCDQFYVNKRWLGGMLTNWKTVRQSIKRLKDLEQQ 120
tr_hit_id Q1XGC8
Definition tr|Q1XGC8|Q1XGC8_PHYPA Ribosomal protein S2 OS=Physcomitrella patens
Align length 149
Score (bit) 145.0
E-value 2.0e-33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961539|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_G12, 5'
         (630 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1XGC8|Q1XGC8_PHYPA Ribosomal protein S2 OS=Physcomitrella pa...   145   2e-33
tr|Q7YAL1|Q7YAL1_CHAVU Ribosomal protein S2 OS=Chara vulgaris GN...   138   3e-31
tr|Q8M1D9|Q8M1D9_CHAGL Ribosomal protein S2 OS=Chaetosphaeridium...    93   1e-17
tr|B6BPW4|B6BPW4_9RICK Ribosomal protein S2 OS=Candidatus Pelagi...    81   5e-14
tr|Q0FGP8|Q0FGP8_9RHOB 30S ribosomal protein S2 OS=Rhodobacteral...    80   1e-13
tr|Q2PEV2|Q2PEV2_TRIPR Putative UDP-glucose pyrophosphorylase OS...    79   2e-13
tr|Q9TCC3|Q9TCC3_NEPOL Ribosomal protein S2 OS=Nephroselmis oliv...    77   8e-13
tr|A7P1N4|A7P1N4_VITVI Chromosome chr19 scaffold_4, whole genome...    77   1e-12
tr|Q4FM69|Q4FM69_PELUB Probable 30S ribosomal protein S2 OS=Pela...    75   2e-12
tr|Q1V2V1|Q1V2V1_9RICK Probable 30S ribosomal protein S2 OS=Cand...    75   2e-12
tr|B5K562|B5K562_9RHOB Ribosomal protein S2 OS=Octadecabacter an...    75   4e-12
tr|B5J665|B5J665_9RHOB Ribosomal protein S2 OS=Octadecabacter an...    73   1e-11
tr|A8TUL0|A8TUL0_9PROT Ribosomal protein S2 OS=alpha proteobacte...    73   1e-11
tr|B6BTU9|B6BTU9_9PROT Ribosomal protein S2 OS=beta proteobacter...    73   2e-11
tr|A8CT97|A8CT97_9CHLR Ribosomal protein S2 OS=Dehalococcoides s...    73   2e-11
tr|O21288|O21288_RECAM Ribosomal protein S2 OS=Reclinomonas amer...    73   2e-11
tr|B2HV07|B2HV07_ACIBC 30S ribosomal protein S2 OS=Acinetobacter...    72   2e-11
tr|B0VUW0|B0VUW0_ACIBS 30S ribosomal protein S2 OS=Acinetobacter...    72   2e-11
tr|B0VBD7|B0VBD7_ACIBY 30S ribosomal protein S2 OS=Acinetobacter...    72   2e-11
tr|B7I3K1|B7I3K1_ACIBA Ribosomal protein S2 OS=Acinetobacter bau...    72   2e-11
tr|B7GZP9|B7GZP9_ACIBA Ribosomal protein S2 OS=Acinetobacter bau...    72   2e-11
tr|A9E4T4|A9E4T4_9RHOB 30S ribosomal protein S2 OS=Oceanibulbus ...    72   2e-11
tr|A6Y7D1|A6Y7D1_VIBCH Ribosomal protein S2 OS=Vibrio cholerae R...    72   2e-11
tr|A6XUY1|A6XUY1_VIBCH Ribosomal protein S2 OS=Vibrio cholerae A...    72   2e-11
tr|A6AA35|A6AA35_VIBCH Ribosomal protein S2 OS=Vibrio cholerae 6...    72   2e-11
tr|A6A859|A6A859_VIBCH Ribosomal protein S2 OS=Vibrio cholerae M...    72   2e-11
tr|A3H3C2|A3H3C2_VIBCH Ribosomal protein S2 OS=Vibrio cholerae B...    72   2e-11
tr|A3EN39|A3EN39_VIBCH Ribosomal protein S2 (Fragment) OS=Vibrio...    72   2e-11
tr|A3EAZ2|A3EAZ2_VIBCH Ribosomal protein S2 OS=Vibrio cholerae M...    72   2e-11
tr|A2PW25|A2PW25_VIBCH Ribosomal protein S2 OS=Vibrio cholerae M...    72   2e-11

>tr|Q1XGC8|Q1XGC8_PHYPA Ribosomal protein S2 OS=Physcomitrella
           patens GN=rps2 PE=3 SV=1
          Length = 241

 Score =  145 bits (366), Expect = 2e-33
 Identities = 79/149 (53%), Positives = 104/149 (69%), Gaps = 13/149 (8%)
 Frame = +3

Query: 222 VILQRLLSTSAHLGYQGPSTLYYQRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSIIHKG 401
           +++Q+LLST+A+LG++ P T  +Q YLYGFR++ AII+LEKTL  L+ ACN+I+SII   
Sbjct: 7   LVIQKLLSTNAYLGHRIP-TSDFQGYLYGFRNEMAIINLEKTLICLRRACNLIESIIRAK 65

Query: 402 GHLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNWEHMKH----------EKRLK 551
           GH LLVNTDP  N+I+ +MAKKTNQ+YIN KWIGGFLTN +HMK+            +LK
Sbjct: 66  GHFLLVNTDPEYNKIVQQMAKKTNQSYINHKWIGGFLTNRKHMKNVQKHFQNFSAHSKLK 125

Query: 552 SSSTQHS---SPRLLKMQRYFEGLTTRQI 629
            +ST       P   KMQ+ FEG+ T  I
Sbjct: 126 DASTSSPFDFFPHFRKMQKCFEGIMTHDI 154


>tr|Q7YAL1|Q7YAL1_CHAVU Ribosomal protein S2 OS=Chara vulgaris
           GN=rps2 PE=3 SV=1
          Length = 225

 Score =  138 bits (347), Expect = 3e-31
 Identities = 74/147 (50%), Positives = 95/147 (64%), Gaps = 12/147 (8%)
 Frame = +3

Query: 225 ILQRLLSTSAHLGYQGPSTLYYQRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSIIHKGG 404
           ++QRLLST AH G + P T  +Q YLYG R++ AIIDLE+TL  L+ ACN I+ II   G
Sbjct: 7   VIQRLLSTKAHFGNRTP-TSDFQPYLYGLRNEIAIIDLERTLLYLRRACNFIEYIIRSNG 65

Query: 405 HLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNWEHMKHE------------KRL 548
           H+L VNT+P  N+II KMAK+T Q+YIN KWIGGFLTNW+H+ H             K L
Sbjct: 66  HILFVNTNPQNNQIIQKMAKETCQSYINHKWIGGFLTNWKHIFHVQAHFQHFENLSLKAL 125

Query: 549 KSSSTQHSSPRLLKMQRYFEGLTTRQI 629
            ++      PR  KM++ FEG+ T  I
Sbjct: 126 DTAQHIRKVPRYKKMKKCFEGIVTNDI 152


>tr|Q8M1D9|Q8M1D9_CHAGL Ribosomal protein S2 OS=Chaetosphaeridium
           globosum GN=rps2 PE=3 SV=1
          Length = 191

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 4/113 (3%)
 Frame = +3

Query: 222 VILQRLLSTSAHLGYQGPSTLYYQRY-LYGFR-HKRAIIDLEKTLFLLKIACNMIKSIIH 395
           +++ +LL  +AHLG     T +  RY LYG R + RAI DLEKTL  ++ AC+ ++SI+ 
Sbjct: 7   LVISKLLKINAHLGRPKLRTSHVSRYFLYGLRSNTRAIFDLEKTLTCIRRACHFLESILD 66

Query: 396 KGGHLLLVNTDPLC--NEIITKMAKKTNQNYINSKWIGGFLTNWEHMKHEKRL 548
           K G +L V+  P    N II + A KTNQ++I +KWIGG LTNW+H+ +   L
Sbjct: 67  KQGCILFVSEGPNSPYNAIIKETALKTNQSFITTKWIGGLLTNWKHISYYNHL 119


>tr|B6BPW4|B6BPW4_9RICK Ribosomal protein S2 OS=Candidatus
           Pelagibacter sp. HTCC7211 GN=rpsB PE=4 SV=1
          Length = 272

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 47/136 (34%), Positives = 77/136 (56%), Gaps = 12/136 (8%)
 Frame = +3

Query: 222 VILQRLLSTSAHLGYQGPSTLYY----QRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSI 389
           + +Q+LL    HLG++   TL +    ++Y++G R    IIDL +TL L K+A   + +I
Sbjct: 6   ITIQQLLEAGVHLGHK---TLRWNPKMKKYIFGKRDSIHIIDLTQTLELTKVALEKVYNI 62

Query: 390 IHKGGHLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNW--------EHMKHEKR 545
           I   G +L V+T    +E I ++AK+T+Q ++N +W+GG LTNW        +  K+E  
Sbjct: 63  IANNGKILFVSTKKQASEAIAEVAKETDQYFVNYRWLGGMLTNWGTISGSIKKMKKYETA 122

Query: 546 LKSSSTQHSSPRLLKM 593
           L + +   +   LLKM
Sbjct: 123 LAAENRGFTKKELLKM 138


>tr|Q0FGP8|Q0FGP8_9RHOB 30S ribosomal protein S2 OS=Rhodobacterales
           bacterium HTCC2255 GN=OM2255_03665 PE=3 SV=1
          Length = 344

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
 Frame = +3

Query: 228 LQRLLSTSAHLGYQGPS-TLYYQRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSIIHKGG 404
           L++LL    H G+Q         +Y+YG R+   I+DL +T+ LL  A N+++  + KGG
Sbjct: 8   LRQLLEAGVHFGHQTHRWNPRMDQYIYGSRNGIHIMDLTQTVPLLDQALNVVRETVSKGG 67

Query: 405 HLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNWEHM-KHEKRLKSSSTQHSSPR 581
            +L V T    ++ + + A+++ Q Y+N +W+GG LTNW+ + K  +RLK+ S Q     
Sbjct: 68  RILFVGTKRQASKAVAEAAERSAQYYMNHRWLGGTLTNWQTVSKSIQRLKAISAQ----- 122

Query: 582 LLKMQRYFEGLTTRQ 626
              M+  F+GLT ++
Sbjct: 123 ---METGFDGLTKKE 134


>tr|Q2PEV2|Q2PEV2_TRIPR Putative UDP-glucose pyrophosphorylase
           OS=Trifolium pratense PE=2 SV=1
          Length = 628

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
 Frame = +3

Query: 222 VILQRLLSTSAHLGYQGPSTLYYQRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSIIHKG 401
           V++Q+LLST+AH+G Q   T +++ Y YG R+K AIID +KTL  ++ A N I  +  + 
Sbjct: 6   VVIQKLLSTNAHIGRQ-VVTHHFKEYTYGLRNKMAIIDSDKTLICMRSAFNFISCLARQN 64

Query: 402 GHLLLVNTDPLCNEIITKMAKKTN--QNYINSKW-IGGFLTN 518
           G  + +NT+PL +EI   M KK        +S W  GGFLTN
Sbjct: 65  GRFMFINTNPLFDEIFDLMTKKVGCYSPSSSSLWRTGGFLTN 106


>tr|Q9TCC3|Q9TCC3_NEPOL Ribosomal protein S2 OS=Nephroselmis
           olivacea GN=rps2 PE=3 SV=1
          Length = 235

 Score = 77.0 bits (188), Expect = 8e-13
 Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 10/117 (8%)
 Frame = +3

Query: 300 LYGFRHKRAIIDLEKTLFLLKIACNMIKSIIHKGGHLLLVNTDPLCNEIITKMAKKTNQN 479
           L   R+   I+D+ KT+  L  A ++I SI+ + GH+L +N++PL N+++ K  + T Q+
Sbjct: 41  LIASRNAVYILDISKTIKGLFNALDVISSIVSQKGHILFINSNPLYNKLLQKTCELTEQS 100

Query: 480 YINSKWIGGFLTNWEHMKHE----------KRLKSSSTQHSSPRLLKMQRYFEGLTT 620
           Y+N++W+GG LTNW  +  E            L +S    S+PR  KM++ F+G  T
Sbjct: 101 YVNNRWVGGTLTNWPIISKEIETYKKVVTQLHLYTSLFYVSTPRYEKMKKSFQGFQT 157


>tr|A7P1N4|A7P1N4_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027688001
           PE=3 SV=1
          Length = 221

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 39/100 (39%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
 Frame = +3

Query: 222 VILQRLLSTSAHLGYQGPSTLYYQRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSIIHKG 401
           +++Q+LLST+AH+G +     +++ Y YGFR+  A+ID +KTL  ++ AC+ + S++ + 
Sbjct: 6   LVIQKLLSTNAHMGRRLVEH-HFKVYTYGFRNGCAVIDSDKTLICMRNACDFMASLVRQK 64

Query: 402 GHLLLVNTDPLCNEIITKMAKKTNQNYINSKW-IGGFLTN 518
           G  L VNT+ L +EI+ +M +K      ++ W +GGFLTN
Sbjct: 65  GRFLFVNTNSLFDEIVEQMTRKIGCFTPDAPWRLGGFLTN 104


>tr|Q4FM69|Q4FM69_PELUB Probable 30S ribosomal protein S2
           OS=Pelagibacter ubique GN=rpsB PE=3 SV=1
          Length = 273

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 12/134 (8%)
 Frame = +3

Query: 228 LQRLLSTSAHLGYQGPSTLYY----QRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSIIH 395
           +Q+LL    HLG++   TL +    ++Y++G R    IIDL +TL L  +A   + + I 
Sbjct: 8   IQQLLEAGVHLGHK---TLRWNPKMKKYIFGKRDSIHIIDLTQTLELTNVALEKVYNTIA 64

Query: 396 KGGHLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNW--------EHMKHEKRLK 551
             G +L V+T    +E I ++AK+T Q ++N +W+GG LTNW        +  K+E  L 
Sbjct: 65  NNGKILFVSTKKQASEAIAEVAKETGQYFVNYRWLGGMLTNWGTISGSIKKMKKYEADLV 124

Query: 552 SSSTQHSSPRLLKM 593
           + +   +   LLKM
Sbjct: 125 AENRGFTKKELLKM 138


>tr|Q1V2V1|Q1V2V1_9RICK Probable 30S ribosomal protein S2
           OS=Candidatus Pelagibacter ubique HTCC1002
           GN=PU1002_01881 PE=3 SV=1
          Length = 273

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 12/134 (8%)
 Frame = +3

Query: 228 LQRLLSTSAHLGYQGPSTLYY----QRYLYGFRHKRAIIDLEKTLFLLKIACNMIKSIIH 395
           +Q+LL    HLG++   TL +    ++Y++G R    IIDL +TL L  +A   + + I 
Sbjct: 8   IQQLLEAGVHLGHK---TLRWNPKMKKYIFGKRDSIHIIDLTQTLELTNVALEKVYNTIA 64

Query: 396 KGGHLLLVNTDPLCNEIITKMAKKTNQNYINSKWIGGFLTNW--------EHMKHEKRLK 551
             G +L V+T    +E I ++AK+T Q ++N +W+GG LTNW        +  K+E  L 
Sbjct: 65  NNGKILFVSTKKQASEAIAEVAKETGQYFVNYRWLGGMLTNWGTISGSIKKMKKYEADLV 124

Query: 552 SSSTQHSSPRLLKM 593
           + +   +   LLKM
Sbjct: 125 AENRGFTKKELLKM 138