DK961585 |
Clone id |
TST39A01NGRL0010_I15 |
Library |
TST39 |
Length |
661 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_I15. 5' end sequence. |
Accession |
DK961585 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL30Contig1 |
Sequence |
ACCGGCCTCTCTCTGTGCTGTCGTCTCCCTCGAGATCATCATCTTTTCGCAGGGGAAAGA GAAAGCTTGGTTGCAGAGACCGTCGGGACGCCATGGCTGCAGCTACCGCATCCTCCCTCA CGGCCGCCTGTGTCTCCTCCCTCTCTGCCCACTCCTCCACCTCCCCTGCCCCAGATCACA TCAATTGCTCCTCTCCTTTCGCCAAATTCTCGGGTCTCAAGCTAGCCTCCTCCCCGCTTC CTTCCCACCACACCCAAGAGAAGAAGAAGAGAAGCAGTGGCAGCAGGAAGGCGCATCATG TCACTGCAACGGCAGCCGTGGAGGCTCCCCCCAAGACCGATGTCTCGTTGGTGGAGAAGA GCATCAATACTATCTTATTCTTGGCCGTTGATGCAGTTGAGAAGGCTAACTCTGGACACC CAGGTCTTCCCATGGGGTGTGCTCCGATGGGCCACATTCTGTATGACGAGATCATGAGAT ACAACCCAAAAAATCCCTATTGGTTCAATCGCGACAGGTTCGTCCTTTCTGCGGGCCATG GTTGCATGTTGCAGTATGCACTTCTTCATCTTGCCGGCTACGACAGCGTCCAGGAGGAAG ATCTGAAGCAATTCAGGCAATGGGAGAGCCGAACTCCTGGGCATCCTGAAAACTTTGAGA C |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q43848 |
Definition |
sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum tuberosum |
Align length |
157 |
Score (bit) |
219.0 |
E-value |
1.0e-56 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961585|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0010_I15, 5' (661 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum tub... 219 1e-56 sp|Q7SIC9|TKTC_MAIZE Transketolase, chloroplastic OS=Zea mays PE... 215 2e-55 sp|O20250|TKTC_SPIOL Transketolase, chloroplastic OS=Spinacia ol... 212 2e-54 sp|Q42677|TKT7_CRAPL Transketolase 7 OS=Craterostigma plantagine... 201 4e-51 sp|Q42675|TKTA_CRAPL Transketolase 10 OS=Craterostigma plantagin... 182 1e-45 sp|Q8YRU9|TKT_ANASP Transketolase OS=Anabaena sp. (strain PCC 71... 177 6e-44 sp|P45694|TKT_BACSU Transketolase OS=Bacillus subtilis GN=tkt PE... 139 2e-32 sp|Q9KAD7|TKT_BACHD Transketolase OS=Bacillus halodurans GN=tkt ... 138 2e-32 sp|P51010|TKT_XANFL Transketolase OS=Xanthobacter flavus GN=cbbT... 136 9e-32 sp|P22976|TKT_STRPN Probable transketolase OS=Streptococcus pneu... 135 2e-31 sp|O67642|TKT_AQUAE Transketolase OS=Aquifex aeolicus GN=tkt PE=... 133 7e-31 sp|Q8NZX4|TKT_STRP8 Transketolase OS=Streptococcus pyogenes sero... 131 4e-30 sp|Q5XAK5|TKT_STRP6 Transketolase OS=Streptococcus pyogenes sero... 131 4e-30 sp|O83571|TKT_TREPA Transketolase OS=Treponema pallidum GN=tkt P... 129 1e-29 sp|Q8CPC7|TKT_STAES Transketolase OS=Staphylococcus epidermidis ... 129 2e-29 sp|Q5HPJ9|TKT_STAEQ Transketolase OS=Staphylococcus epidermidis ... 129 2e-29 sp|P57958|TKT2_PASMU Transketolase 2 OS=Pasteurella multocida GN... 128 2e-29 sp|P57927|TKT1_PASMU Transketolase 1 OS=Pasteurella multocida GN... 128 2e-29 sp|Q9URM2|TKT_SCHPO Probable transketolase OS=Schizosaccharomyce... 128 3e-29 sp|P23254|TKT1_YEAST Transketolase 1 OS=Saccharomyces cerevisiae... 127 5e-29 sp|P66963|TKT_STAAW Transketolase OS=Staphylococcus aureus (stra... 127 7e-29 sp|Q6G9L6|TKT_STAAS Transketolase OS=Staphylococcus aureus (stra... 127 7e-29 sp|Q6GH64|TKT_STAAR Transketolase OS=Staphylococcus aureus (stra... 127 7e-29 sp|P99161|TKT_STAAN Transketolase OS=Staphylococcus aureus (stra... 127 7e-29 sp|P66962|TKT_STAAM Transketolase OS=Staphylococcus aureus (stra... 127 7e-29 sp|Q5HG77|TKT_STAAC Transketolase OS=Staphylococcus aureus (stra... 127 7e-29 sp|Q12630|TKT1_KLULA Transketolase OS=Kluyveromyces lactis GN=TK... 125 3e-28 sp|P34736|TKT_PICST Transketolase OS=Pichia stipitis GN=TKT PE=3... 124 3e-28 sp|P43757|TKT_HAEIN Transketolase OS=Haemophilus influenzae GN=t... 124 6e-28 sp|Q89AY2|TKT_BUCBP Transketolase OS=Buchnera aphidicola subsp. ... 122 2e-27
>sp|Q43848|TKTC_SOLTU Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1 Length = 741
Score = 219 bits (557), Expect = 1e-56 Identities = 107/157 (68%), Positives = 121/157 (77%) Frame = +3
Query: 189 SSPFAKFSGLKLASSPLPSHHTQEKKKRSSGSRXXXXXXXXXXXXXXXXTDVSLVEKSIN 368 S F+ FSGLK S+P S H + ++ ++ TD ++VEKS+N Sbjct: 30 SLSFSTFSGLK--STPFTSSHRRILPS-TTVTKQQFSVRASAAVETLEKTDAAIVEKSVN 86
Query: 369 TILFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVLSAGHGCM 548 TI FLA+DAVEKANSGHPGLPMGCAPMGHILYDE+M+YNPKNPYWFNRDRFVLSAGHGCM Sbjct: 87 TIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMKYNPKNPYWFNRDRFVLSAGHGCM 146
Query: 549 LQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFE 659 LQYALLHLAGYDSVQE+DLK FRQW SR PGHPENFE Sbjct: 147 LQYALLHLAGYDSVQEDDLKSFRQWGSRIPGHPENFE 183
>sp|Q7SIC9|TKTC_MAIZE Transketolase, chloroplastic OS=Zea mays PE=1 SV=1 Length = 675
Score = 215 bits (547), Expect = 2e-55 Identities = 96/104 (92%), Positives = 102/104 (98%) Frame = +3
Query: 348 LVEKSINTILFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVL 527 L+EKS+NTI FLA+DAVEKANSGHPGLPMGCAPMGH+LYDE+MRYNPKNPYWFNRDRFVL Sbjct: 15 LLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVL 74
Query: 528 SAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFE 659 SAGHGCMLQYALLHLAGYDSV+EEDLKQFRQW SRTPGHPENFE Sbjct: 75 SAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFE 118
>sp|O20250|TKTC_SPIOL Transketolase, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Length = 741
Score = 212 bits (539), Expect = 2e-54 Identities = 99/109 (90%), Positives = 102/109 (93%), Gaps = 1/109 (0%) Frame = +3
Query: 336 TDVS-LVEKSINTILFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNR 512 TD+ LVEKS+NTI FLA+DAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNR Sbjct: 75 TDIDQLVEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNR 134
Query: 513 DRFVLSAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFE 659 DRFVLSAGHGCMLQYALLHLAGYDSV EEDLK FRQW SR PGHPENFE Sbjct: 135 DRFVLSAGHGCMLQYALLHLAGYDSVLEEDLKTFRQWGSRIPGHPENFE 183
>sp|Q42677|TKT7_CRAPL Transketolase 7 OS=Craterostigma plantagineum GN=TKT7 PE=2 SV=1 Length = 676
Score = 201 bits (510), Expect = 4e-51 Identities = 89/104 (85%), Positives = 96/104 (92%) Frame = +3
Query: 348 LVEKSINTILFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVL 527 LV KS+NTI FLA+DAVEKA SGHPG+PMGCAPMGH+LYDE MR+NPKNPYWFNRDRFVL Sbjct: 13 LVSKSVNTIRFLAIDAVEKAKSGHPGMPMGCAPMGHVLYDEFMRFNPKNPYWFNRDRFVL 72
Query: 528 SAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFE 659 SAGHGCMLQYALLHL+GYDSV+EEDLK RQW SRTP HPENFE Sbjct: 73 SAGHGCMLQYALLHLSGYDSVKEEDLKSLRQWGSRTPAHPENFE 116
>sp|Q42675|TKTA_CRAPL Transketolase 10 OS=Craterostigma plantagineum GN=TKT10 PE=2 SV=1 Length = 679
Score = 182 bits (463), Expect = 1e-45 Identities = 81/104 (77%), Positives = 90/104 (86%) Frame = +3
Query: 348 LVEKSINTILFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVL 527 LV KS+NTI FLA+DAVE SGHPG+PMGCAPMGH+L+DE M++NPKNPYWFNRDRFVL Sbjct: 17 LVVKSVNTIRFLAIDAVENVKSGHPGMPMGCAPMGHVLFDEFMKFNPKNPYWFNRDRFVL 76
Query: 528 SAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENFE 659 SAGHG ML Y LLHLAGYDSV+ EDLK RQW S+TP HPENFE Sbjct: 77 SAGHGAMLLYGLLHLAGYDSVKVEDLKGLRQWGSKTPAHPENFE 120
>sp|Q8YRU9|TKT_ANASP Transketolase OS=Anabaena sp. (strain PCC 7120) GN=tkt PE=1 SV=1 Length = 670
Score = 177 bits (448), Expect = 6e-44 Identities = 82/104 (78%), Positives = 89/104 (85%) Frame = +3
Query: 345 SLVEKSINTILFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFV 524 SL E SIN I FLAVDA+EKA SGHPGLPMG APM +L++ MRYNPKNP WFNRDRFV Sbjct: 7 SLEELSINAIRFLAVDAIEKAKSGHPGLPMGAAPMAFVLWNRFMRYNPKNPKWFNRDRFV 66
Query: 525 LSAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENF 656 LSAGHG MLQYALL+L GYDSV ED+KQFRQWES+TPGHPENF Sbjct: 67 LSAGHGSMLQYALLYLTGYDSVSIEDIKQFRQWESKTPGHPENF 110
>sp|P45694|TKT_BACSU Transketolase OS=Bacillus subtilis GN=tkt PE=3 SV=2 Length = 667
Score = 139 bits (349), Expect = 2e-32 Identities = 63/102 (61%), Positives = 81/102 (79%) Frame = +3
Query: 345 SLVEKSINTILFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFV 524 ++ +KS+ TI L++DA+EKANSGHPG+PMG APM + L+ + M +P NP WFNRDRFV Sbjct: 3 TIEKKSVATIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTKFMNVSPANPGWFNRDRFV 62
Query: 525 LSAGHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPE 650 LSAGHG L Y++LHL+G+D + EDLK FRQW S+TPGHPE Sbjct: 63 LSAGHGSALLYSMLHLSGFD-LSIEDLKGFRQWGSKTPGHPE 103
>sp|Q9KAD7|TKT_BACHD Transketolase OS=Bacillus halodurans GN=tkt PE=3 SV=1 Length = 666
Score = 138 bits (348), Expect = 2e-32 Identities = 63/97 (64%), Positives = 77/97 (79%) Frame = +3
Query: 360 SINTILFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVLSAGH 539 ++NTI L++D+VEKANSGHPG+PMG APM L+ + M +NP NP W NRDRFVLSAGH Sbjct: 9 AVNTIRTLSIDSVEKANSGHPGMPMGAAPMAFCLWTKFMNHNPANPDWVNRDRFVLSAGH 68
Query: 540 GCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPE 650 G ML Y+LLHL GYD + E+L+ FRQW S+TPGHPE Sbjct: 69 GSMLLYSLLHLTGYD-LSLEELQNFRQWGSKTPGHPE 104
>sp|P51010|TKT_XANFL Transketolase OS=Xanthobacter flavus GN=cbbT PE=3 SV=2 Length = 668
Score = 136 bits (343), Expect = 9e-32 Identities = 60/101 (59%), Positives = 80/101 (79%) Frame = +3
Query: 354 EKSINTILFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVLSA 533 ++ N I FLA+DAVE ANSGHPGLPMG A + +L+ ++++Y+P P+W +RDRFVLSA Sbjct: 13 DRLANAIRFLAIDAVEAANSGHPGLPMGAADIATVLFTKVLKYDPSRPFWPDRDRFVLSA 72
Query: 534 GHGCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPENF 656 GHG ML Y++LHLAGY+ V +++K+FRQ S TPGHPENF Sbjct: 73 GHGSMLLYSVLHLAGYEKVTIDEIKRFRQLGSLTPGHPENF 113
>sp|P22976|TKT_STRPN Probable transketolase OS=Streptococcus pneumoniae GN=tkt PE=3 SV=2 Length = 658
Score = 135 bits (340), Expect = 2e-31 Identities = 58/97 (59%), Positives = 74/97 (76%) Frame = +3
Query: 360 SINTILFLAVDAVEKANSGHPGLPMGCAPMGHILYDEIMRYNPKNPYWFNRDRFVLSAGH 539 S+N I FL +DA+ KANSGHPG+ MG APM + L+ + + NP P W NRDRF+LSAGH Sbjct: 5 SVNAIRFLGIDAINKANSGHPGVVMGAAPMAYSLFTKQLHINPAQPNWINRDRFILSAGH 64
Query: 540 GCMLQYALLHLAGYDSVQEEDLKQFRQWESRTPGHPE 650 G ML YALLHL+G++ V +++K FRQW S+TPGHPE Sbjct: 65 GSMLLYALLHLSGFEDVSMDEIKSFRQWGSKTPGHPE 101
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9P7Z7 |
Definition |
tr|A9P7Z7|A9P7Z7_POPTR Putative uncharacterized protein OS=Populus trichocarpa |
Align length |
151 |
Score (bit) |
223.0 |
E-value |
8.0e-57 |
Report |
|