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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961608
Clone id TST39A01NGRL0010_J15
Library
Length 673
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_J15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCGCTCCCTCTCCGCTTCTTTTGGCAGGAGCGAGGGTACAGGTGTGTAAGTTTCGTCTGA
TTGGCATGGCTTTCGCGCTACTTTGTCGAGCAGGACATAGAATCTAAGGACTAGTTTCAG
CGATGGCGGAGGCTAGAGCAAAGACCCTGGTGGGCAAGAGGGTCTCCGCAGAAGCAGGTT
GTCAAGAGAGCGTACCCGTGAGAAACAACAGGCTTTTGCGTTCGTCTAACAGCGAGGAGG
CTTCACCGAGCGAAAAGACTCCCGCTGCTCATGTATCTAGGTTTCATCGTCCGCAGAGTG
ACCTTGAGCACTTTCAAGGAGAAATGTCTGCAGTTCCTGGATGCCCAGAGTTCGACAAAC
ATTCTTCCTTCTCCCAAGAAGACTTTTTTACTGCCAGGGTTCCATCTATGCTCTTGCCGC
AGTGCAAGCAGGCAACCTCACCGGTTCTCTTTGGTCGAGACAAGCATTTATATCCTGTGC
ACCAGGACGAGTTTGCAGCTAGGGTTTCAGATGCAACTCCTCTTCATTTCTCTCCGGATA
AGCGAGCCTTTAGCATCCAGCAAGATCCATTCGCATCAGAGTTTATGCACCTGCATTCAG
ACGCGTTACCTGGTTGTGAGGAGCAGATTACGAGGAATACTCGCATTCCAGATGCAGCTC
CCCATTTTCTGCC
■■Homology search results ■■ -
sp_hit_id Q63647
Definition sp|Q63647|PNRC1_RAT Proline-rich nuclear receptor coactivator 1 OS=Rattus norvegicus
Align length 33
Score (bit) 27.7
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961608|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_J15, 5'
         (673 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q63647|PNRC1_RAT Proline-rich nuclear receptor coactivator 1 ...    28   0.82 
sp|P46023|GR101_LYMST G-protein coupled receptor GRL101 OS=Lymna...    33   1.1  
sp|Q06VC5|MMP_TNAVC Putative matrix metalloproteinase OS=Trichop...    32   2.3  
sp|Q96PX9|PKH4B_HUMAN Pleckstrin homology domain-containing fami...    32   4.0  
sp|Q6ZSZ5|ARHGI_HUMAN Rho guanine nucleotide exchange factor 18 ...    32   4.0  
sp|Q59623|SODC_NEIMB Superoxide dismutase [Cu-Zn] OS=Neisseria m...    31   5.2  
sp|Q99814|EPAS1_HUMAN Endothelial PAS domain-containing protein ...    31   5.2  
sp|P32257|MED15_KLULA Mediator of RNA polymerase II transcriptio...    31   6.8  
sp|Q70E73|RAPH1_HUMAN Ras-associated and pleckstrin homology dom...    30   8.8  
sp|Q67P86|IF2_SYMTH Translation initiation factor IF-2 OS=Symbio...    30   8.8  
sp|Q6ZPT1|KLHL9_MOUSE Kelch-like protein 9 OS=Mus musculus GN=Kl...    30   8.9  
sp|Q9P2J3|KLHL9_HUMAN Kelch-like protein 9 OS=Homo sapiens GN=KL...    30   8.9  
sp|Q2T9Z7|KLHL9_BOVIN Kelch-like protein 9 OS=Bos taurus GN=KLHL...    30   8.9  
sp|Q90Y57|JAG1A_DANRE Protein jagged-1a OS=Danio rerio GN=jag1a ...    30   8.9  

>sp|Q63647|PNRC1_RAT Proline-rich nuclear receptor coactivator 1
           OS=Rattus norvegicus GN=Pnrc1 PE=2 SV=2
          Length = 296

 Score = 27.7 bits (60), Expect(2) = 0.82
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 370 SPKKTFLLPGFHLCSCRSASRQPHRFSLVETSI 468
           SP  + L+ G HLC     SRQ  +F+L  T I
Sbjct: 162 SPPHSQLVHGIHLCEQPKISRQKSKFNLPLTKI 194



 Score = 25.0 bits (53), Expect(2) = 0.82
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 219 RSSNSEEASPSEKTPAAHVSRFHRPQSDLEHFQGEMSAVPG 341
           R      ASP+ + P    SRFH+ Q      +G  S VPG
Sbjct: 88  RRKKKVRASPAGQLP----SRFHQFQQHRPSLEGGRSPVPG 124


>sp|P46023|GR101_LYMST G-protein coupled receptor GRL101 OS=Lymnaea
           stagnalis PE=2 SV=1
          Length = 1115

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = -1

Query: 625 CSSQPG-NASECRCINSDANGSCW-MLKARLSGEK*RGVASETLAANSSWCTGYKCLSRP 452
           C  +P   A++ RC     NG C   L+  + G+K  G A ++   N   C+ + CL   
Sbjct: 440 CDPRPVCEANQFRC----KNGQCIDPLQVCVKGDKYDGCADQSHLIN---CSQHICLEGQ 492

Query: 451 KRTGEVACLHCGKSIDGTLAVKKSSWEKEEC 359
            R  +  C++  K  DGT+   +  W++  C
Sbjct: 493 FRCRKSFCINQTKVCDGTVDCLQGMWDENNC 523


>sp|Q06VC5|MMP_TNAVC Putative matrix metalloproteinase
           OS=Trichoplusia ni ascovirus 2c GN=ORF158 PE=3 SV=1
          Length = 501

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 24/91 (26%), Positives = 39/91 (42%)
 Frame = +3

Query: 201 RNNRLLRSSNSEEASPSEKTPAAHVSRFHRPQSDLEHFQGEMSAVPGCPEFDKHSSFSQE 380
           R+N LL S    + + S   P   + RF +  S  E   G++        F      S +
Sbjct: 336 RSNGLLYSGYPLKTTHSWSVPI--IGRF-KVTSAFETLTGDIVIGVNYTTFYYFDRMSMQ 392

Query: 381 DFFTARVPSMLLPQCKQATSPVLFGRDKHLY 473
            +   ++P  LLP+C+     ++F  D HLY
Sbjct: 393 LYRMQKLPLHLLPRCRSTKKTIVFSIDSHLY 423


>sp|Q96PX9|PKH4B_HUMAN Pleckstrin homology domain-containing family G
            member 4B OS=Homo sapiens GN=PLEKHG4B PE=2 SV=3
          Length = 1271

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 30/102 (29%), Positives = 43/102 (42%)
 Frame = +3

Query: 189  SVPVRNNRLLRSSNSEEASPSEKTPAAHVSRFHRPQSDLEHFQGEMSAVPGCPEFDKHSS 368
            S PV  +R L       +SPS   PA    R     S L H   EM A     E+ +   
Sbjct: 775  SPPVTQSRSL-------SSPSGLHPAEEDGRQQVGSSRLRHIMAEMIATER--EYIRCLG 825

Query: 369  FSQEDFFTARVPSMLLPQCKQATSPVLFGRDKHLYPVHQDEF 494
            +  +++F   +  M LPQ  +    V+FG  + L+  HQ  F
Sbjct: 826  YVIDNYFP-EMERMDLPQGLRGKHHVIFGNLEKLHDFHQQHF 866


>sp|Q6ZSZ5|ARHGI_HUMAN Rho guanine nucleotide exchange factor 18
           OS=Homo sapiens GN=ARHGEF18 PE=1 SV=2
          Length = 1173

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
 Frame = +3

Query: 240 ASPSEKTPAAHVSRFHRPQSDLEHFQGEMSAVPGCPEFDKHSSFSQE---------DFFT 392
           A+P    P A++   H    D        SA+PG PE   + SF ++         +  T
Sbjct: 44  AAPGPGAPGANMGNAHSKSGDRH------SALPGRPELSFYGSFPRKWSENVFLDNELLT 97

Query: 393 ARVPSMLLPQCKQATSPVLFGRDKHLYPVH 482
           +++ SML PQ ++      F      YP H
Sbjct: 98  SKILSMLRPQSERG-----FRAGDLRYPTH 122


>sp|Q59623|SODC_NEIMB Superoxide dismutase [Cu-Zn] OS=Neisseria
           meningitidis serogroup B GN=sodC PE=1 SV=2
          Length = 186

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 15/153 (9%)
 Frame = +3

Query: 57  LIGMAFALLCRAGHRI*GLVSAMAEARAKTLVGKRVSAEAGCQESVPVRNNRLLRSSNSE 236
           L+ +A + +C  G         +A+A     + K  S E   Q+  PV  N+ + +    
Sbjct: 6   LLALAVSAVCSVG---------VAQAHEHNTIPKGASIEVKVQQLDPVNGNKDVGTVTIT 56

Query: 237 EAS------PSEKTPAAHVSRFH---RPQSDLEHFQGEMSAVPGC-----PEFDKHSSFS 374
           E++      P  +  +  +  FH    P  + +  +G+++A  G      P+  K   + 
Sbjct: 57  ESNYGLVFTPDLQGLSEGLHGFHIHENPSCEPKEKEGKLTAGLGAGGHWDPKGAKQHGYP 116

Query: 375 -QEDFFTARVPSMLLPQCKQATSPVLFGRDKHL 470
            Q+D     +P++ +     AT+PVL  R KHL
Sbjct: 117 WQDDAHLGDLPALTVLHDGTATNPVLAPRLKHL 149


>sp|Q99814|EPAS1_HUMAN Endothelial PAS domain-containing protein 1
           OS=Homo sapiens GN=EPAS1 PE=1 SV=3
          Length = 870

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +3

Query: 303 LEHFQGEMSAVPGCPEFDKHSSFSQEDFFTARVPSMLLPQCKQATSPV--LFGRDKHLYP 476
           L+ FQ ++ +    PE    SS     FF A   + L P C QA++P+  + GR    +P
Sbjct: 585 LDKFQQQLESKKTEPEHRPMSSI----FFDAGSKASLPPCCGQASTPLSSMGGRSNTQWP 640

Query: 477 VHQDEFAARVSDATPLHFSPDKRAFSIQQDPF 572
                         PLHF P K A   Q+  F
Sbjct: 641 PDP-----------PLHFGPTKWAVGDQRTEF 661


>sp|P32257|MED15_KLULA Mediator of RNA polymerase II transcription
            subunit 15 OS=Kluyveromyces lactis GN=GAL11 PE=3 SV=3
          Length = 1034

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 192  VPVRNNRLLRSSNSEEASPSEKTPAAHVSRFHRPQSD 302
            + VRNN+LL  S SE+   S K P A ++   +P +D
Sbjct: 891  ISVRNNKLLMPSKSEKTLRSFKIPIADITACFKPFAD 927


>sp|Q70E73|RAPH1_HUMAN Ras-associated and pleckstrin homology
            domains-containing protein 1 OS=Homo sapiens GN=RAPH1
            PE=1 SV=3
          Length = 1250

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 25/90 (27%), Positives = 37/90 (41%)
 Frame = +3

Query: 195  PVRNNRLLRSSNSEEASPSEKTPAAHVSRFHRPQSDLEHFQGEMSAVPGCPEFDKHSSFS 374
            P RN+ +  SS +E   P   +  + VS+F  P ++      E    P  P      + S
Sbjct: 975  PQRNSSIKSSSGAEHPEPKRPSVDSLVSKF-TPPAESGSPSKETLPPPAAPPKPGKLNLS 1033

Query: 375  QEDFFTARVPSMLLPQCKQATSPVLFGRDK 464
                    +P +L   C  A +PVL GR K
Sbjct: 1034 -----GVNLPGVLQQGCVSAKAPVLSGRGK 1058


>sp|Q67P86|IF2_SYMTH Translation initiation factor IF-2
           OS=Symbiobacterium thermophilum GN=infB PE=3 SV=1
          Length = 1044

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 23/74 (31%), Positives = 29/74 (39%)
 Frame = +3

Query: 126 AEARAKTLVGKRVSAEAGCQESVPVRNNRLLRSSNSEEASPSEKTPAAHVSRFHRPQSDL 305
           AE  A     K   AEAG   S         R +++  A+  EK PAA   R   PQ++ 
Sbjct: 234 AEQTAGAAQAKPARAEAGTGASS--------RPASAAPAAQGEKRPAAAAERREEPQAEA 285

Query: 306 EHFQGEMSAVPGCP 347
               G    VP  P
Sbjct: 286 PQTSGPSRPVPAGP 299
tr_hit_id B4PWC5
Definition tr|B4PWC5|B4PWC5_DROYA GE15509 OS=Drosophila yakuba
Align length 106
Score (bit) 40.0
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961608|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_J15, 5'
         (673 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4PWC5|B4PWC5_DROYA GE15509 OS=Drosophila yakuba GN=GE15509 P...    40   0.13 
tr|B3NTG0|B3NTG0_DROER GG18108 OS=Drosophila erecta GN=GG18108 P...    37   1.5  
tr|Q4P9Q2|Q4P9Q2_USTMA Putative uncharacterized protein OS=Ustil...    35   4.3  
tr|Q6IVB9|Q6IVB9_DANRE Spp1 OS=Danio rerio GN=spp1 PE=2 SV=1           34   7.3  
tr|B4M0M2|B4M0M2_DROVI GJ23149 OS=Drosophila virilis GN=GJ23149 ...    34   7.3  
tr|B3RV82|B3RV82_TRIAD Putative uncharacterized protein (Fragmen...    34   9.5  

>tr|B4PWC5|B4PWC5_DROYA GE15509 OS=Drosophila yakuba GN=GE15509 PE=4
           SV=1
          Length = 1204

 Score = 40.0 bits (92), Expect = 0.13
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
 Frame = +3

Query: 234 EEASPSEKTPAAHVSRFHRPQSDLEHFQGEMSAVPGCPEFDKHSSFS--------QEDFF 389
           E ASP E T  A  +R     +++ HF  E +     PEF    SF+        Q D F
Sbjct: 123 ESASP-EATGGASTAR----TNNIRHFLTEPTETRTSPEFPSFESFAGQLDDMGVQRDEF 177

Query: 390 TARVPSMLLPQCKQATSPVLFGRDKHLYPVHQDEFAARVSDATPLH 527
            A + ++L+ +      P+L G  K++ P+   E+ + + +  PLH
Sbjct: 178 MATLRNLLI-RANDLMMPLLQGPFKYMTPIQMAEYTSAILETPPLH 222


>tr|B3NTG0|B3NTG0_DROER GG18108 OS=Drosophila erecta GN=GG18108 PE=4
           SV=1
          Length = 1373

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
 Frame = +3

Query: 219 RSSNSEEASPSEKTPAAHVSRFHRPQSDLEHFQGEMSAVPGCPEFDKHSSFS-------- 374
           R+  ++E +  E T  A ++      +++ HF    +     PEF    SF+        
Sbjct: 289 RTRPADETTSLETTGRASIAM----TNNIRHFLEVPTEARTSPEFPSFESFAAQLDEMGV 344

Query: 375 QEDFFTARVPSMLLPQCKQATSPVLFGRDKHLYPVHQDEFAARVSDATPLH 527
           Q D F A + ++L+ +      P+L G  K++ P+   E+ + + +  PLH
Sbjct: 345 QRDEFMATLRNLLI-RANDLLKPLLQGPFKYMTPIQMAEYTSAILETPPLH 394


>tr|Q4P9Q2|Q4P9Q2_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM03161.1 PE=4 SV=1
          Length = 1923

 Score = 35.0 bits (79), Expect = 4.3
 Identities = 31/138 (22%), Positives = 52/138 (37%)
 Frame = +3

Query: 198 VRNNRLLRSSNSEEASPSEKTPAAHVSRFHRPQSDLEHFQGEMSAVPGCPEFDKHSSFSQ 377
           V   R  R S++    PS + PA+  S   RP+S L     + S          H   + 
Sbjct: 196 VARTRRRRPSSAARFDPSSR-PASRASGPSRPESALSLNDADSSQPETTTSIPSHRPLAD 254

Query: 378 EDFFTARVPSMLLPQCKQATSPVLFGRDKHLYPVHQDEFAARVSDATPLHFSPDKRAFSI 557
           +           LP+ +  ++P    R ++ +    DE AA  SD TP+  S      S+
Sbjct: 255 DP----------LPRSRTESAPAFQRRSRNAFDTSPDEQAATASDQTPVSASNPVPQTSL 304

Query: 558 QQDPFASEFMHLHSDALP 611
            +    ++      + LP
Sbjct: 305 HRQNVWNDITEADPEDLP 322


>tr|Q6IVB9|Q6IVB9_DANRE Spp1 OS=Danio rerio GN=spp1 PE=2 SV=1
          Length = 305

 Score = 34.3 bits (77), Expect = 7.3
 Identities = 23/71 (32%), Positives = 32/71 (45%)
 Frame = +3

Query: 168 AEAGCQESVPVRNNRLLRSSNSEEASPSEKTPAAHVSRFHRPQSDLEHFQGEMSAVPGCP 347
           A  G QE VPV +        S   SPS+   A+     +  +SD E    E +A PG  
Sbjct: 214 AALGAQEIVPVGDQAATEEGASARDSPSDSASASASQEENEEESDSE----ETTATPGAA 269

Query: 348 EFDKHSSFSQE 380
           + + +SS S E
Sbjct: 270 DSESNSSQSTE 280


>tr|B4M0M2|B4M0M2_DROVI GJ23149 OS=Drosophila virilis GN=GJ23149
           PE=4 SV=1
          Length = 1521

 Score = 34.3 bits (77), Expect = 7.3
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +3

Query: 204 NNRLLRSSNSEEASPSEKTPAAHVSRFHRPQSDLEHFQGEMSAVPGCP--EFDKHSSFSQ 377
           NN          A P+E T +AH SR   P+   E F  E   VP  P  +  +H    Q
Sbjct: 397 NNNTSDIMGQTSAKPNECTQSAHSSRASTPREFRESFVSETQGVPVAPPRQHQQHKQQPQ 456

Query: 378 EDFFTARVPSMLLPQCKQATSP 443
           ++     +P++ +  C    SP
Sbjct: 457 QE-----LPTITVEDCSFEQSP 473


>tr|B3RV82|B3RV82_TRIAD Putative uncharacterized protein (Fragment)
           OS=Trichoplax adhaerens GN=TRIADDRAFT_24631 PE=4 SV=1
          Length = 302

 Score = 33.9 bits (76), Expect = 9.5
 Identities = 19/69 (27%), Positives = 37/69 (53%)
 Frame = +3

Query: 357 KHSSFSQEDFFTARVPSMLLPQCKQATSPVLFGRDKHLYPVHQDEFAARVSDATPLHFSP 536
           K+  + ++D   +R+P M LP C +AT+ +L   D        + F  R  + T + F+P
Sbjct: 176 KYKCYLRKD---SRLPMMYLPDCIRATAEILQAPD--------ETFRMRTYNVTAMSFTP 224

Query: 537 DKRAFSIQQ 563
           ++ A+ I++
Sbjct: 225 EELAYEIKK 233