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NBDC - LSDB Archive
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DK961648
Clone id TST39A01NGRL0010_L10
Library
Length 605
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_L10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTGTACGCAGTATTCAGTATGGCCATCTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCT
AGCTGCGCCCCCGCAGAGAGCTTTTCAAAGAGCTTCTCTGGTCTCAAGGCCACTACCCTG
TTCGCCCCCAAGAGCCCCAACCCGCTCGCCATCTCTAATGGCAGCCGTGTGAGCGCCATG
CTTGTGTGGAAGCCGTATGACAACAAGAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTG
TCAAGTGAGCAGATTGCGAAGCAGGTGGACTTCATGGTCCGAAAAGGCTGGACCCCTTGC
ATTGAGTTCGACAAAATCGGGAGCGTGTACCGAGAGCACTTCCACGGCAGCGGCTACTAC
GATGGGCGGTTTTTTTTTCCCCCCCCCCCTGCCCATGTTTGGCTGCCAAGAAAAAAAAGG
GGGTGGTGCGTGAAATTGCAGAGTGCGCCAAGGAGTATCCTGAAGCCTTCATCCGCGTGC
TGGGCTTTGACGCTNAGAGGCAGGTGCAGGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTG
TCTAAACTTTCTTAAAGCAAGCCAATTTAGTTGGCATGAATGCCTGCTTCCCATTTCCCA
CTGGC
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 99
Score (bit) 103.0
E-value 4.0e-32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961648|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_L10, 5'
         (605 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   103   4e-32
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   102   2e-31
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   107   4e-31
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   108   4e-31
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   100   5e-31
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   103   7e-31
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   107   1e-30
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   107   1e-30
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   107   1e-30
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   100   1e-30
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   107   2e-30
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   100   3e-30
sp|Q08186|RBS6_MESCR Ribulose bisphosphate carboxylase small cha...   102   5e-30
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...    99   5e-30
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   100   5e-30
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...    99   7e-30
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   109   7e-30
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...    99   9e-30
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   104   9e-30
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...    97   1e-29
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   107   1e-29
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   103   1e-29
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...    96   2e-29
sp|Q08183|RBS3_MESCR Ribulose bisphosphate carboxylase small cha...   101   2e-29
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...    99   2e-29
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   103   2e-29
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   103   2e-29
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   103   2e-29
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...    98   3e-29
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   102   3e-29

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  103 bits (258), Expect(2) = 4e-32
 Identities = 50/99 (50%), Positives = 67/99 (67%), Gaps = 5/99 (5%)
 Frame = +1

Query: 94  FSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 261
           F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E ++K
Sbjct: 26  FTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSK 85

Query: 262 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRFF 375
           ++D+++R  W PC+EF+ + G VYREH H  GYYDGR++
Sbjct: 86  EIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYW 124



 Score = 55.1 bits (131), Expect(2) = 4e-32
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 536
           V++E+ EC KEYP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 140 VMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  102 bits (255), Expect(2) = 2e-31
 Identities = 50/98 (51%), Positives = 70/98 (71%), Gaps = 4/98 (4%)
 Frame = +1

Query: 94  FSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 264
           F+GLK++  F   K  N +    SNGSRV+ M VW P   KKFETLSYLPPL+ EQ+ K+
Sbjct: 25  FTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKE 84

Query: 265 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRFF 375
           V++++RKGW PC+EF+ + G V+R++    GYYDGR++
Sbjct: 85  VEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYW 122



 Score = 53.9 bits (128), Expect(2) = 2e-31
 Identities = 23/40 (57%), Positives = 29/40 (72%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPSV 542
           V++E+AEC  EYPEAFIR++GFD  RQVQ   F+   P V
Sbjct: 138 VLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Medicago sativa PE=2 SV=1
          Length = 180

 Score =  107 bits (266), Expect(2) = 4e-31
 Identities = 52/99 (52%), Positives = 71/99 (71%), Gaps = 5/99 (5%)
 Frame = +1

Query: 94  FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 261
           F+GLK++  F    K+ N +    SNG RV+ M VW P   KKFETLSYLPPL+ EQ+AK
Sbjct: 26  FTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAK 85

Query: 262 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRFF 375
           +V++++RKGW PC+EF+ + G VYRE+    GYYDGR++
Sbjct: 86  EVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYW 124



 Score = 48.5 bits (114), Expect(2) = 4e-31
 Identities = 19/38 (50%), Positives = 28/38 (73%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 536
           V++E+A+C  EYP++FIR++GFD  RQVQ   F+   P
Sbjct: 140 VLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  108 bits (269), Expect(2) = 4e-31
 Identities = 51/95 (53%), Positives = 64/95 (67%)
 Frame = +1

Query: 91  SFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 270
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 271 FMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRFF 375
           +++R GW PCIEF K+G VYRE+ +  GYYDGR++
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYW 122



 Score = 47.4 bits (111), Expect(2) = 4e-31
 Identities = 20/38 (52%), Positives = 27/38 (71%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 536
           V++E+ EC+K YP+ F R++GFD  RQVQ   FL  KP
Sbjct: 138 VLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKP 175


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  100 bits (248), Expect(2) = 5e-31
 Identities = 49/103 (47%), Positives = 66/103 (64%), Gaps = 8/103 (7%)
 Frame = +1

Query: 91  SFSGLKATTLFAP--KSPNPLA------ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 246
           +F+GLK+T  F    K  N  A       SNG RV  M VW P+ N KFETLSYLP L+ 
Sbjct: 15  AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 247 EQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRFF 375
           EQ+ K+V++++R  W PC+EFD  GS+ R++    GYYDGR++
Sbjct: 75  EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYW 117



 Score = 55.1 bits (131), Expect(2) = 5e-31
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 536
           V+ E+ ECAK YP+AFIRV+GFD  RQVQ   F+V KP
Sbjct: 133 VINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  103 bits (256), Expect(2) = 7e-31
 Identities = 54/99 (54%), Positives = 69/99 (69%), Gaps = 5/99 (5%)
 Frame = +1

Query: 94  FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 261
           F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYLPPLSSEQ+AK
Sbjct: 28  FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 262 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRFF 375
           +VD+++RK   PC+EF+ + G VYREH    GYYDGR++
Sbjct: 88  EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYW 126



 Score = 51.6 bits (122), Expect(2) = 7e-31
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 536
           V++E+ EC K YP AFIR++GFD  RQVQ+  F+  KP
Sbjct: 142 VLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  107 bits (268), Expect(2) = 1e-30
 Identities = 54/98 (55%), Positives = 68/98 (69%), Gaps = 4/98 (4%)
 Frame = +1

Query: 94  FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 261
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 262 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRFF 375
           +VD+++R  W PCIEF K G VYRE+    GYYDGR++
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYW 123



 Score = 46.2 bits (108), Expect(2) = 1e-30
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 539
           V+ E+ E  K YPE F+R++GFD  RQVQ   F+  KP+
Sbjct: 139 VIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  107 bits (268), Expect(2) = 1e-30
 Identities = 54/98 (55%), Positives = 68/98 (69%), Gaps = 4/98 (4%)
 Frame = +1

Query: 94  FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 261
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 262 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRFF 375
           +VD+++R  W PCIEF K G VYRE+    GYYDGR++
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYW 123



 Score = 46.2 bits (108), Expect(2) = 1e-30
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 539
           V+ E+ E  K YPE F+R++GFD  RQVQ   F+  KP+
Sbjct: 139 VIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  107 bits (266), Expect(2) = 1e-30
 Identities = 54/98 (55%), Positives = 71/98 (72%), Gaps = 4/98 (4%)
 Frame = +1

Query: 94  FSGLKATTLF--APKSPNPLAI-SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 264
           F+GLK+++ F    KS +  +I SNG RV  M VW P   KKFETLSYLPPLSSE +AK+
Sbjct: 30  FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 265 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRFF 375
           VD+++RK W PC+EF+ + G VYRE+    GYYDGR++
Sbjct: 90  VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYW 127



 Score = 46.6 bits (109), Expect(2) = 1e-30
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 539
           V++E+ E  K YP++FIR++GFD  RQVQ   F+  KP+
Sbjct: 143 VLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPA 181


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  100 bits (250), Expect(2) = 1e-30
 Identities = 49/99 (49%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
 Frame = +1

Query: 94  FSGLKATTLFAP--KSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 261
           F+GLK++  F    K+ N +    SNG RV+ M VW P   KKFETLSYLP L+  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 262 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRFF 375
           +VD+++R  W PC+EF+ + G VYREH +  GYYDGR++
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYW 122



 Score = 52.8 bits (125), Expect(2) = 1e-30
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 536
           V++E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 138 VLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 97
Score (bit) 186.0
E-value 2.0e-60
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961648|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_L10, 5'
         (605 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   186   2e-60
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   121   1e-35
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   118   9e-35
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   118   9e-35
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   118   9e-35
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   118   1e-34
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   115   6e-34
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   108   7e-32
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   107   9e-32
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   107   1e-31
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   104   1e-31
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   106   3e-31
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   106   3e-31
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   107   7e-31
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   103   2e-30
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   104   2e-30
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   102   4e-30
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   102   4e-30
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   101   6e-30
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   103   6e-30
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   110   6e-30
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   106   1e-29
tr|B7FHB2|B7FHB2_MEDTR Putative uncharacterized protein OS=Medic...   108   2e-29
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   100   2e-29
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   103   2e-29
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   103   2e-29
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   101   2e-29
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...    99   2e-29
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   100   4e-29
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   107   4e-29

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  186 bits (471), Expect(2) = 2e-60
 Identities = 85/97 (87%), Positives = 93/97 (95%)
 Frame = +1

Query: 85  SKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 264
           SKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAKQ
Sbjct: 23  SKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAKQ 82

Query: 265 VDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRFF 375
           V++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGR++
Sbjct: 83  VEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYW 119



 Score = 71.2 bits (173), Expect(2) = 2e-60
 Identities = 34/39 (87%), Positives = 37/39 (94%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 539
           V+REIAECAKEYP AFIRVLGFDA RQVQV+GFLV+KPS
Sbjct: 135 VLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  121 bits (304), Expect(2) = 1e-35
 Identities = 59/99 (59%), Positives = 72/99 (72%), Gaps = 3/99 (3%)
 Frame = +1

Query: 88  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 267
           K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 268 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRFF 375
           DFM+++   PCIEFD +GSV R +F G   SGYYDGR++
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYW 125



 Score = 52.4 bits (124), Expect(2) = 1e-35
 Identities = 21/39 (53%), Positives = 31/39 (79%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 539
           V+REI EC + +P  ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 141 VLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  118 bits (295), Expect(2) = 9e-35
 Identities = 56/99 (56%), Positives = 72/99 (72%), Gaps = 3/99 (3%)
 Frame = +1

Query: 88  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 267
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 268 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRFF 375
           D+M+++   PCIEFD +GSV R +F G   SGYYDGR++
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYW 160



 Score = 53.1 bits (126), Expect(2) = 9e-35
 Identities = 21/39 (53%), Positives = 31/39 (79%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 539
           V+REI EC  ++P  ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 176 VLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  118 bits (295), Expect(2) = 9e-35
 Identities = 56/99 (56%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
 Frame = +1

Query: 88  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 267
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 268 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRFF 375
           D+M+++   PCIEFD +G+V R +F G   SGYYDGR++
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYW 130



 Score = 53.1 bits (126), Expect(2) = 9e-35
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 539
           V+REI EC   YP  ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 146 VLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  118 bits (295), Expect(2) = 9e-35
 Identities = 57/99 (57%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
 Frame = +1

Query: 88  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 267
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 268 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRFF 375
           D+M+++   PCIEFD +GSV R +F G   SGYYDGR++
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYW 130



 Score = 53.1 bits (126), Expect(2) = 9e-35
 Identities = 21/39 (53%), Positives = 31/39 (79%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 539
           V+REI EC  ++P  ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 146 VLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  118 bits (296), Expect(2) = 1e-34
 Identities = 58/99 (58%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
 Frame = +1

Query: 88  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 267
           K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 268 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRFF 375
           DFM+++   PCIEFD +GSV R +F G   SGYYDGR++
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYW 125



 Score = 52.4 bits (124), Expect(2) = 1e-34
 Identities = 21/39 (53%), Positives = 31/39 (79%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 539
           V+REI EC + +P  ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 141 VLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  115 bits (289), Expect(2) = 6e-34
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 3/99 (3%)
 Frame = +1

Query: 88  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 267
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 268 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRFF 375
           D+M+++   PCIEFD +GSV R +F G   SGYYDGR++
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYW 129



 Score = 52.8 bits (125), Expect(2) = 6e-34
 Identities = 21/39 (53%), Positives = 31/39 (79%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 539
           V+REI EC  ++P  ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 145 VLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  108 bits (269), Expect(2) = 7e-32
 Identities = 50/96 (52%), Positives = 67/96 (69%)
 Frame = +1

Query: 88  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 267
           K+FSGLK++TLF+ K+ +  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 268 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRFF 375
           D+M+++   PC+EFD    V R +    GYYDGR++
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYW 127



 Score = 53.5 bits (127), Expect(2) = 7e-32
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 539
           V+REI EC K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 143 VLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  107 bits (268), Expect(2) = 9e-32
 Identities = 49/96 (51%), Positives = 66/96 (68%)
 Frame = +1

Query: 88  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 267
           K+FSGLK+ T+F+ K+ N  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 268 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRFF 375
           ++M+++   PC+EFD    V R +    GYYDGR++
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYW 127



 Score = 53.5 bits (127), Expect(2) = 9e-32
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 539
           V+REI EC K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 143 VLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  107 bits (267), Expect(2) = 1e-31
 Identities = 50/96 (52%), Positives = 67/96 (69%)
 Frame = +1

Query: 88  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 267
           K+FSGLK+ TLF+ +S    ++ NGSRV+ M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 268 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRFF 375
           ++M+++   PC+EFD    V RE+    GYYDGR++
Sbjct: 92  EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYW 127



 Score = 53.5 bits (127), Expect(2) = 1e-31
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = +3

Query: 423 VVREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 539
           V+REI EC K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 143 VLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181