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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961681
Clone id TST39A01NGRL0010_M21
Library
Length 653
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_M21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCGAGGTTTCCAAGGTTTTCTCTTCGTCCTCCCTCTCTCCCCTCGCGAGTCGCAGACGG
CTTCCAAACTCCATAGCCAGTCAGTCCTGCAAGGCATCTCTCCCGTCCCTCAGAGCCTCC
GATCTGACAAGGTACCGTGCTTTACCTTGCTTCCGATCTGTCATTTTTCCACCTCAGGGC
CTGCTGCTTCAGCATGATCTACTTCGGCAAGCTCTGCCATTTAGATATTTAGAGTTAATC
TTTCTATCAGAGTTCCACCTTGGAGACTTGCCCAGTATTTACGGATTTTTTCCCCATTTT
CTCACATCGCCAGTCTCAAGCTCTCCAGAAAGCTTTTCTCTCATTGTCCCTGTAGCAGTT
TCTATTTTCTCTTGTGTGAGCTTTTCATCACCGGCGCACCTGTGCGTTTGATCTACGTCC
GTGAAGATGGCTCCNATGCAGGTGTCACTTCGCAGTGCCATGGGGGTTTTGAAGGATCAG
ACTAGCATCTCCTTAGCCAAGGTAGCAAGTGCAGGTGTAGCTGACCTTGAAGTAGCTATT
GTGAAGGCTACGAGCCATGATGACACTCCGATGGAGGAGAAATATGTGCAAGAGGTTCTC
CACTTGACGTCCTATTCAAGGTCTTATGTTAGTTCATGCGTCCGGGCTATTTC
■■Homology search results ■■ -
sp_hit_id Q8LF20
Definition sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana
Align length 58
Score (bit) 77.0
E-value 8.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961681|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_M21, 5'
         (653 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g2543...    77   8e-14
sp|Q8S9J8|CAP1_ARATH Putative clathrin assembly protein At4g3228...    75   4e-13
sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g0265...    65   2e-10
sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g0305...    64   9e-10
sp|Q9ZVN6|CAP5_ARATH Putative clathrin assembly protein At1g0502...    55   3e-07
sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g5720...    52   4e-06
sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g352...    51   5e-06
sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g2594...    49   2e-05
sp|Q9C502|CAP11_ARATH Putative clathrin assembly protein At1g333...    48   5e-05
sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g0160...    47   9e-05
sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g1491...    44   6e-04
sp|O83265|RL11_TREPA 50S ribosomal protein L11 OS=Treponema pall...    35   0.45 
sp|Q9C9X5|CAP12_ARATH Putative clathrin assembly protein At1g681...    33   1.7  
sp|Q9FRH3|CAP13_ARATH Putative clathrin assembly protein At1g252...    31   5.0  
sp|Q8XV02|Y3030_RALSO UPF0192 protein RSc3030 OS=Ralstonia solan...    30   8.5  

>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430
           OS=Arabidopsis thaliana GN=At2g25430 PE=2 SV=2
          Length = 653

 Score = 77.0 bits (188), Expect = 8e-14
 Identities = 38/58 (65%), Positives = 46/58 (79%)
 Frame = +1

Query: 436 MQVSLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           M  S+R A+G +KDQTSI +AKVAS    DLEVAIVKATSHDD P  EKY++E+L+LT
Sbjct: 1   MAPSIRKAIGAVKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDPASEKYIREILNLT 58


>sp|Q8S9J8|CAP1_ARATH Putative clathrin assembly protein At4g32285
           OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=1
          Length = 635

 Score = 74.7 bits (182), Expect = 4e-13
 Identities = 37/58 (63%), Positives = 46/58 (79%)
 Frame = +1

Query: 436 MQVSLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           M +S+R A+GV+KDQTSI +AKVAS    DLEVAIVKATSHDD    +KY++E+L LT
Sbjct: 1   MALSMRKAIGVVKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDQSSDKYIREILSLT 58


>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650
           OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2
          Length = 611

 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 31/56 (55%), Positives = 44/56 (78%), Gaps = 2/56 (3%)
 Frame = +1

Query: 448 LRSAMGVLKDQTSISLAKVA--SAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           L+ A+G +KDQTS+ LAKV   S+ + +LE+A+VKAT HDD P E+KY++E+L LT
Sbjct: 6   LKRAIGAVKDQTSVGLAKVGGRSSSLTELEIAVVKATRHDDYPAEDKYIREILCLT 61


>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050
           OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1
          Length = 599

 Score = 63.5 bits (153), Expect = 9e-10
 Identities = 31/55 (56%), Positives = 44/55 (80%), Gaps = 2/55 (3%)
 Frame = +1

Query: 451 RSAMGVLKDQTSISLAKV--ASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           + A+G +KDQTS+ LAKV   SA +++L+VAIVKAT H++ P EEKY++E+L LT
Sbjct: 7   KRAIGAVKDQTSVGLAKVNGRSASLSELDVAIVKATRHEEFPAEEKYIREILSLT 61


>sp|Q9ZVN6|CAP5_ARATH Putative clathrin assembly protein At1g05020
           OS=Arabidopsis thaliana GN=At1g05020 PE=2 SV=1
          Length = 653

 Score = 55.1 bits (131), Expect = 3e-07
 Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 6/61 (9%)
 Frame = +1

Query: 436 MQVSLRSAMGVLKDQTSISLAKVASAG-----VADLEVAIVKATSHD-DTPMEEKYVQEV 597
           M   L+ A+G +KDQTSISLAKVA+       +  LEVAI+KATSHD + P++++ V E+
Sbjct: 1   MPSKLKKAIGAVKDQTSISLAKVANGATGGGDLTTLEVAILKATSHDEEVPIDDRLVTEI 60

Query: 598 L 600
           L
Sbjct: 61  L 61


>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200
           OS=Arabidopsis thaliana GN=At5g57200 PE=2 SV=1
          Length = 591

 Score = 51.6 bits (122), Expect = 4e-06
 Identities = 26/55 (47%), Positives = 39/55 (70%)
 Frame = +1

Query: 445 SLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           S R A G LKD T++ LAKV S    DL++AIVKAT+H ++P +E++V+++   T
Sbjct: 6   SFRKAYGALKDTTTVGLAKVNSE-FKDLDIAIVKATNHVESPPKERHVRKIFSAT 59


>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200
           OS=Arabidopsis thaliana GN=At5g35200 PE=2 SV=1
          Length = 544

 Score = 51.2 bits (121), Expect = 5e-06
 Identities = 25/53 (47%), Positives = 39/53 (73%)
 Frame = +1

Query: 439 QVSLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEV 597
           Q SLR  +G +KD T++SLAKV S    +L++AIVKAT+H + P +E+Y++ +
Sbjct: 8   QSSLRRYLGAIKDTTTVSLAKVNS-DYKELDIAIVKATNHVERPSKERYIRAI 59


>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940
           OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1
          Length = 601

 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 24/55 (43%), Positives = 39/55 (70%)
 Frame = +1

Query: 445 SLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           S R A+G +KD T++S+AKV S    DL+VAIVKAT+H ++  +E++++ +   T
Sbjct: 6   SFRKAVGAIKDSTTVSIAKVNSE-FKDLDVAIVKATNHVESAPKERHIRRIFSAT 59


>sp|Q9C502|CAP11_ARATH Putative clathrin assembly protein At1g33340
           OS=Arabidopsis thaliana GN=At1g33340 PE=2 SV=1
          Length = 374

 Score = 47.8 bits (112), Expect = 5e-05
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
 Frame = +1

Query: 436 MQVSLRSAMGVLKDQTSISLAKVAS---AGVADLEVAIVKATSHDDTPMEEKYVQEVLHL 606
           +    R  +G+ KD  SI  A V +       D+EVA+V+ATSHDD P+++K + E+L L
Sbjct: 5   LSAKFRQVLGLAKDHASIGRAIVQNYNEKAFFDIEVAVVRATSHDDCPVDDKTMHEILFL 64


>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600
           OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2
          Length = 571

 Score = 47.0 bits (110), Expect = 9e-05
 Identities = 24/55 (43%), Positives = 37/55 (67%)
 Frame = +1

Query: 445 SLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           S R A G LKD T + L +V S   ADL+VAIVKAT+H + P ++++++++   T
Sbjct: 6   SWRKAYGALKDSTKVGLVRVNSE-YADLDVAIVKATNHVECPPKDRHLRKIFAAT 59
tr_hit_id A9NW76
Definition tr|A9NW76|A9NW76_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 61
Score (bit) 80.9
E-value 6.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961681|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_M21, 5'
         (653 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NW76|A9NW76_PICSI Putative uncharacterized protein OS=Picea...    81   6e-14
tr|B2D2J2|B2D2J2_BRAOL ENTH OS=Brassica oleracea GN=B67C16.2 PE=...    77   7e-13
tr|A7P5U4|A7P5U4_VITVI Chromosome chr4 scaffold_6, whole genome ...    77   7e-13
tr|Q501G2|Q501G2_ARATH At4g32285 OS=Arabidopsis thaliana PE=2 SV=1     75   5e-12
tr|A9TS29|A9TS29_PHYPA Predicted protein (Fragment) OS=Physcomit...    72   4e-11
tr|Q10NB4|Q10NB4_ORYSJ Os03g0275500 protein OS=Oryza sativa subs...    71   5e-11
tr|B7ZYW2|B7ZYW2_MAIZE Putative uncharacterized protein OS=Zea m...    71   5e-11
tr|A3AGK1|A3AGK1_ORYSJ Putative uncharacterized protein OS=Oryza...    71   5e-11
tr|A2XF36|A2XF36_ORYSI Putative uncharacterized protein OS=Oryza...    71   5e-11
tr|A9SIW0|A9SIW0_PHYPA Predicted protein OS=Physcomitrella paten...    68   4e-10
tr|Q65XV1|Q65XV1_ORYSJ cDNA, clone: J065141G20, full insert sequ...    68   6e-10
tr|B8AXC6|B8AXC6_ORYSI Putative uncharacterized protein OS=Oryza...    68   6e-10
tr|A3AZ92|A3AZ92_ORYSJ Putative uncharacterized protein OS=Oryza...    68   6e-10
tr|A7Q6W7|A7Q6W7_VITVI Chromosome chr12 scaffold_57, whole genom...    67   1e-09
tr|A7PX91|A7PX91_VITVI Chromosome chr12 scaffold_36, whole genom...    62   3e-08
tr|Q60EC1|Q60EC1_ORYSJ Putative clathrin assembly protein OS=Ory...    60   9e-08
tr|A3B472|A3B472_ORYSJ Putative uncharacterized protein OS=Oryza...    60   9e-08
tr|A2Y4V6|A2Y4V6_ORYSI Putative uncharacterized protein OS=Oryza...    60   1e-07
tr|Q8LJJ6|Q8LJJ6_ORYSJ cDNA clone:002-148-A09, full insert seque...    58   4e-07
tr|A2WXL8|A2WXL8_ORYSI Putative uncharacterized protein OS=Oryza...    58   4e-07
tr|A7Q7P7|A7Q7P7_VITVI Chromosome chr18 scaffold_61, whole genom...    57   1e-06
tr|A5AGG6|A5AGG6_VITVI Putative uncharacterized protein OS=Vitis...    57   1e-06
tr|Q658F5|Q658F5_ORYSJ Os06g0175500 protein OS=Oryza sativa subs...    55   3e-06
tr|B8LKD7|B8LKD7_PICSI Putative uncharacterized protein OS=Picea...    55   3e-06
tr|A4Q7L2|A4Q7L2_MEDTR ANTH OS=Medicago truncatula GN=MtrDRAFT_A...    55   4e-06
tr|A9RG11|A9RG11_PHYPA Predicted protein OS=Physcomitrella paten...    53   1e-05
tr|A7PFI9|A7PFI9_VITVI Chromosome chr11 scaffold_14, whole genom...    53   2e-05
tr|A5BPI4|A5BPI4_VITVI Putative uncharacterized protein OS=Vitis...    53   2e-05
tr|A7PFA2|A7PFA2_VITVI Chromosome chr11 scaffold_13, whole genom...    52   3e-05
tr|A5C2E3|A5C2E3_VITVI Putative uncharacterized protein OS=Vitis...    52   3e-05

>tr|A9NW76|A9NW76_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 351

 Score = 80.9 bits (198), Expect = 6e-14
 Identities = 41/61 (67%), Positives = 50/61 (81%)
 Frame = +1

Query: 427 MAPMQVSLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHL 606
           MAP +  LR A+G +KDQTSIS+AKVAS    DL+VAIVKATSHD+ P++EKYV E+LHL
Sbjct: 1   MAPSK--LRKALGAVKDQTSISIAKVASNNAPDLDVAIVKATSHDEIPIDEKYVYEILHL 58

Query: 607 T 609
           T
Sbjct: 59  T 59


>tr|B2D2J2|B2D2J2_BRAOL ENTH OS=Brassica oleracea GN=B67C16.2 PE=4
           SV=1
          Length = 646

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 38/58 (65%), Positives = 46/58 (79%)
 Frame = +1

Query: 436 MQVSLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           M  S+R A+G +KDQTSI +AKVAS    DLEVAIVKATSHDD P  EKY++E+L+LT
Sbjct: 1   MAPSIRKAIGAVKDQTSIGIAKVASNTAPDLEVAIVKATSHDDDPASEKYIREILNLT 58


>tr|A7P5U4|A7P5U4_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032663001
           PE=4 SV=1
          Length = 620

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 41/61 (67%), Positives = 48/61 (78%)
 Frame = +1

Query: 427 MAPMQVSLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHL 606
           MAP   S+R A+G +KDQTSI +AK+AS    DLEVAIVKATSHDD P  EKYVQE+L+L
Sbjct: 1   MAPS--SIRKAIGSVKDQTSIGIAKIASNMAPDLEVAIVKATSHDDDPAAEKYVQEILNL 58

Query: 607 T 609
           T
Sbjct: 59  T 59


>tr|Q501G2|Q501G2_ARATH At4g32285 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 635

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 37/58 (63%), Positives = 46/58 (79%)
 Frame = +1

Query: 436 MQVSLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           M +S+R A+GV+KDQTSI +AKVAS    DLEVAIVKATSHDD    +KY++E+L LT
Sbjct: 1   MALSMRKAIGVVKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDQSSDKYIREILSLT 58


>tr|A9TS29|A9TS29_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_149644 PE=4 SV=1
          Length = 654

 Score = 71.6 bits (174), Expect = 4e-11
 Identities = 37/54 (68%), Positives = 43/54 (79%)
 Frame = +1

Query: 448 LRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           +R A+G LKDQTSI  AKV  A  ADL+VA+VKATSHDD   +EKYVQE+LHLT
Sbjct: 1   IRKAIGGLKDQTSIGFAKVGGARAADLDVALVKATSHDDY-FDEKYVQEILHLT 53


>tr|Q10NB4|Q10NB4_ORYSJ Os03g0275500 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0275500 PE=2 SV=1
          Length = 651

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 33/55 (60%), Positives = 44/55 (80%)
 Frame = +1

Query: 445 SLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           ++R A+G +KDQTSI LAKV S    +L+V IVKATSHDD P EE++++E+LHLT
Sbjct: 5   TIRKALGAVKDQTSIGLAKVTSNIAPELDVLIVKATSHDDEPAEERHIREILHLT 59


>tr|B7ZYW2|B7ZYW2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 639

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 33/55 (60%), Positives = 44/55 (80%)
 Frame = +1

Query: 445 SLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           ++R A+G +KDQTSI LAKV S    +L+V IVKATSHDD P EE++++E+LHLT
Sbjct: 5   TIRKALGAVKDQTSIGLAKVTSNIAPELDVLIVKATSHDDEPAEERHIREILHLT 59


>tr|A3AGK1|A3AGK1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009923 PE=4 SV=1
          Length = 614

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 33/55 (60%), Positives = 44/55 (80%)
 Frame = +1

Query: 445 SLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           ++R A+G +KDQTSI LAKV S    +L+V IVKATSHDD P EE++++E+LHLT
Sbjct: 5   TIRKALGAVKDQTSIGLAKVTSNIAPELDVLIVKATSHDDEPAEERHIREILHLT 59


>tr|A2XF36|A2XF36_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10952 PE=4 SV=1
          Length = 651

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 33/55 (60%), Positives = 44/55 (80%)
 Frame = +1

Query: 445 SLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHLT 609
           ++R A+G +KDQTSI LAKV S    +L+V IVKATSHDD P EE++++E+LHLT
Sbjct: 5   TIRKALGAVKDQTSIGLAKVTSNIAPELDVLIVKATSHDDEPAEERHIREILHLT 59


>tr|A9SIW0|A9SIW0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_185426 PE=4 SV=1
          Length = 642

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 37/61 (60%), Positives = 44/61 (72%)
 Frame = +1

Query: 427 MAPMQVSLRSAMGVLKDQTSISLAKVASAGVADLEVAIVKATSHDDTPMEEKYVQEVLHL 606
           MA     +R A+G LKDQTSI +AKV  A   DL+VAIVKATSHDD   +EK+V E+LHL
Sbjct: 1   MAIAPKKIRKAIGGLKDQTSIGIAKVGGAKAPDLDVAIVKATSHDDY-FDEKHVHEILHL 59

Query: 607 T 609
           T
Sbjct: 60  T 60