DK961700 |
Clone id |
TST39A01NGRL0010_N23 |
Library |
TST39 |
Length |
624 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_N23. 5' end sequence. |
Accession |
DK961700 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1716Contig1 |
Sequence |
ATAAACAGCAGTGTGGCAAATGGAGGATACTGTTCAGAAGCACGGTCAGGATGCGACAAT TTGTTGTCATGCCGGGGCATTGGCCACCCACTGCAGCAATAGAGGCGGTGGCTATTCCGG CAAGAAGGCCATTTGGCAAGCCTCTGTCTATGATTTTGAAAGCCTGGAAGATTTTGAGGA CGCTTCCTTTGTCTACAGAAGATATGGATGTCCTAATGCAGAAGAGCTTGGTGCTGCGGT TGCTTCTTTGGAAGGAGCAGAAGCAGGTCTGGCAACATCCACAGGCATGGGAGCAATCAT TGCTGCAGTCATGTCAATTTGTAAACAAGGAGATCTTATTATAGTTAATCCAGATGTCTA TGGGGTGACATATGAATTTTTCAAGACCGACATGGAGCGTTTTGGCATTGAAGTATTGTT TGAAAGCATCTTCGAAGCACACATACTAGAGAACATTCTACAGAAAAATTTGGGAGAGCC GTCAATGGGTATGATCAAGCGAAGTGTGGTAGTGTTTTTAGAGTCGATCACGAATCCTTT GGTTAAGGTTGCAGACATATCTGCAATAGCCAAACTTTGCAAAAACTATGCAGCTATGCT TGTTGTGGATAATACCATGGCAAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P55218 |
Definition |
sp|P55218|METZ_PSEAE O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa |
Align length |
169 |
Score (bit) |
92.8 |
E-value |
1.0e-18 |
Report |
 |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A8VUM3 |
Definition |
tr|A8VUM3|A8VUM3_9BACI Dihydrodipicolinate synthase OS=Bacillus selenitireducens MLS10 |
Align length |
177 |
Score (bit) |
127.0 |
E-value |
4.0e-28 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961700|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0010_N23, 5' (624 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A8VUM3|A8VUM3_9BACI Dihydrodipicolinate synthase OS=Bacillus ... 127 4e-28 tr|Q9KFD9|Q9KFD9_BACHD Cystathionine gamma-synthase OS=Bacillus ... 120 7e-26 tr|Q5WJQ0|Q5WJQ0_BACSK Cystathionine gamma-lyase OS=Bacillus cla... 116 1e-24 tr|A0M3E5|A0M3E5_GRAFK Methionine gamma-lyase OS=Gramella forset... 113 1e-23 tr|A6CNA1|A6CNA1_9BACI Cystathionine gamma-synthase OS=Bacillus ... 111 4e-23 tr|A3UAN3|A3UAN3_9FLAO Cys/Met metabolism lyase (PLP-dependent) ... 107 4e-22 tr|Q8R9N2|Q8R9N2_THETN Cystathionine beta-lyases/cystathionine g... 106 1e-21 tr|B7R768|B7R768_9THEO Cys/Met metabolism PLP-dependent enzyme s... 106 1e-21 tr|B0K2T5|B0K2T5_THEPX Cystathionine gamma-synthase OS=Thermoana... 105 2e-21 tr|B0K8U0|B0K8U0_THEP3 Cystathionine gamma-synthase OS=Thermoana... 104 4e-21 tr|A9EC23|A9EC23_9FLAO Methionine gamma-lyase OS=Kordia algicida... 104 5e-21 tr|A4AUI7|A4AUI7_9FLAO Cystathionine beta-lyase OS=Flavobacteria... 104 5e-21 tr|A4CKV8|A4CKV8_9FLAO Cystathionine beta-lyase OS=Robiginitalea... 103 1e-20 tr|A2TZX0|A2TZX0_9FLAO Cys/Met metabolism PLP-dependent enzyme O... 103 1e-20 tr|Q5QU17|Q5QU17_IDILO Methionine gamma-lyase OS=Idiomarina loih... 102 1e-20 tr|A8UPL5|A8UPL5_9FLAO Methionine gamma-lyase OS=Flavobacteriale... 102 2e-20 tr|Q97M10|Q97M10_CLOAB Cystathionine gamma-synthase OS=Clostridi... 102 2e-20 tr|Q8RDT4|Q8RDT4_FUSNN Methionine gamma-lyase OS=Fusobacterium n... 101 3e-20 tr|A4VKG0|A4VKG0_PSEU5 O-succinylhomoserine sulfhydrylase OS=Pse... 101 3e-20 tr|Q8L0X4|Q8L0X4_FUSNU L-methionine-alpha-deamino-gamma-mercapto... 101 3e-20 tr|A5TY55|A5TY55_FUSNP Methionine gamma-lyase OS=Fusobacterium n... 101 3e-20 tr|B3Q9B1|B3Q9B1_RHOPT Methionine gamma-lyase OS=Rhodopseudomona... 101 4e-20 tr|Q1IZN0|Q1IZN0_DEIGD Cystathionine gamma-synthase OS=Deinococc... 100 7e-20 tr|A5FI08|A5FI08_FLAJ1 Cystathionine gamma-synthase OS=Flavobact... 100 7e-20 tr|A0Y3T5|A0Y3T5_9GAMM Probable Methionine gamma-lyase OS=Altero... 100 7e-20 tr|Q6NCU8|Q6NCU8_RHOPA Putative cystathionine gamma-lyase OS=Rho... 100 9e-20 tr|Q3IIZ1|Q3IIZ1_PSEHT Probable Methionine gamma-lyase OS=Pseudo... 99 2e-19 tr|A0L5P9|A0L5P9_MAGSM Methionine gamma-lyase OS=Magnetococcus s... 99 2e-19 tr|A4BWK1|A4BWK1_9FLAO Methionine gamma-lyase OS=Polaribacter ir... 99 2e-19 tr|B8CRE0|B8CRE0_9GAMM Methionine gamma-lyase OS=Shewanella piez... 98 3e-19
>tr|A8VUM3|A8VUM3_9BACI Dihydrodipicolinate synthase OS=Bacillus selenitireducens MLS10 GN=BselDRAFT_1859 PE=3 SV=1 Length = 377
Score = 127 bits (320), Expect = 4e-28 Identities = 69/177 (38%), Positives = 106/177 (59%), Gaps = 5/177 (2%) Frame = +2
Query: 107 GGYSGKKAIWQASVYDFESLEDFE-----DASFVYRRYGCPNAEELGAAVASLEGAEAGL 271 G YS I+Q S + F+ ++D E D S++Y R G PN +ELG AVA+LEGAEAG+ Sbjct: 17 GEYSKTTPIYQTSAFAFKDIDDMEQYFNGDKSYLYTRMGNPNTDELGQAVAALEGAEAGV 76
Query: 272 ATSTGMGAIIAAVMSICKQGDLIIVNPDVYGVTYEFFKTDMERFGIEVLFESIFEAHILE 451 A+S+G+ AI+A +S+ K GD +IV D+YG T++ +++ GI V F + Sbjct: 77 ASSSGLSAILAGFLSVAKPGDHVIVAEDLYGGTFQLINDEIQGLGIRVTFMDM------- 129
Query: 452 NILQKNLGEPSMGMIKRSVVVFLESITNPLVKVADISAIAKLCKNYAAMLVVDNTMA 622 N+ + + +V+++ ESITNPL++V D+ I+ L K + L+VDNT A Sbjct: 130 ----TNVKDVEAAITADTVMIYTESITNPLLRVEDLEGISALAKAHDLKLMVDNTFA 182
>tr|Q9KFD9|Q9KFD9_BACHD Cystathionine gamma-synthase OS=Bacillus halodurans GN=BH0542 PE=3 SV=1 Length = 381
Score = 120 bits (301), Expect = 7e-26 Identities = 63/174 (36%), Positives = 104/174 (59%), Gaps = 5/174 (2%) Frame = +2
Query: 116 SGKKAIWQASVYDFESLEDFE-----DASFVYRRYGCPNAEELGAAVASLEGAEAGLATS 280 S K I+Q S + F+ L+D E + ++Y RYG PN+++LG VASLE AE G+ATS Sbjct: 23 SKSKPIYQTSAFVFQDLDDMESFYRGEKEYLYTRYGNPNSDDLGKGVASLEQAEDGVATS 82
Query: 281 TGMGAIIAAVMSICKQGDLIIVNPDVYGVTYEFFKTDMERFGIEVLFESIFEAHILENIL 460 GM AI+ A++++ ++GD +I D+YG TY+ ++ + GI+V F E +++ + Sbjct: 83 AGMSAILVALLALLEKGDHLIAANDLYGGTYQLLAEELPKLGIDVSFVPFQEREVVKRAI 142
Query: 461 QKNLGEPSMGMIKRSVVVFLESITNPLVKVADISAIAKLCKNYAAMLVVDNTMA 622 + K + V++ E++TNPL++V DI + +L K + V+DNT A Sbjct: 143 R-----------KETKVLYSETVTNPLLRVEDIHQVVELGKEHGLSTVIDNTFA 185
>tr|Q5WJQ0|Q5WJQ0_BACSK Cystathionine gamma-lyase OS=Bacillus clausii (strain KSM-K16) GN=ABC0866 PE=3 SV=1 Length = 378
Score = 116 bits (290), Expect = 1e-24 Identities = 68/179 (37%), Positives = 102/179 (56%), Gaps = 5/179 (2%) Frame = +2
Query: 101 RGGGYSGKKAIWQASVYDFESLEDFE-----DASFVYRRYGCPNAEELGAAVASLEGAEA 265 +G S + I+Q S + F+ L D E + ++Y RYG PN ++LG VA LE AE Sbjct: 17 KGENQSKARPIYQTSAFVFKDLADMEQYFKGEKDYLYTRYGNPNTDDLGKGVALLECAED 76
Query: 266 GLATSTGMGAIIAAVMSICKQGDLIIVNPDVYGVTYEFFKTDMERFGIEVLFESIFEAHI 445 G+ATS+GM AI+ A+++ CK GD +I DVYG TY + ++ FGIEV F H Sbjct: 77 GVATSSGMSAILCAILAFCKTGDHLIATMDVYGGTYALLEKELSLFGIEVSF-----VHP 131
Query: 446 LENILQKNLGEPSMGMIKRSVVVFLESITNPLVKVADISAIAKLCKNYAAMLVVDNTMA 622 EN + ++ + G VF E+I+NPLV+V ++ + K + +++VDNT A Sbjct: 132 NEN-WEASIKSNTKG-------VFAETISNPLVRVENLEDLIDAAKRHDLLVIVDNTFA 182
>tr|A0M3E5|A0M3E5_GRAFK Methionine gamma-lyase OS=Gramella forsetii (strain KT0803) GN=mdeA PE=3 SV=1 Length = 404
Score = 113 bits (282), Expect = 1e-23 Identities = 56/156 (35%), Positives = 95/156 (60%) Frame = +2
Query: 155 FESLEDFEDASFVYRRYGCPNAEELGAAVASLEGAEAGLATSTGMGAIIAAVMSICKQGD 334 F++ E + ++Y R+ P+ LG A+A++EG E +++GMGAI + +M +C GD Sbjct: 40 FDTFEGNAEGCYLYSRHSSPSNLYLGEALAAMEGTETANVSASGMGAITSVLMQLCNAGD 99
Query: 335 LIIVNPDVYGVTYEFFKTDMERFGIEVLFESIFEAHILENILQKNLGEPSMGMIKRSVVV 514 I+ + VYG TY F K +FGIE F I + I++N +QKN + V+ Sbjct: 100 HIVCSRTVYGGTYAFLKNFAPKFGIETTFVDITKPEIVKNAVQKN-----------TKVI 148
Query: 515 FLESITNPLVKVADISAIAKLCKNYAAMLVVDNTMA 622 + ES++NPL+++AD+ +++K+ K++ LVVDNT + Sbjct: 149 YCESVSNPLLEIADLESLSKISKSHDLKLVVDNTFS 184
>tr|A6CNA1|A6CNA1_9BACI Cystathionine gamma-synthase OS=Bacillus sp. SG-1 GN=BSG1_09031 PE=3 SV=1 Length = 376
Score = 111 bits (277), Expect = 4e-23 Identities = 59/169 (34%), Positives = 97/169 (57%), Gaps = 5/169 (2%) Frame = +2
Query: 131 IWQASVYDFESLEDFE-----DASFVYRRYGCPNAEELGAAVASLEGAEAGLATSTGMGA 295 I+Q S + F SLE+ E ++ ++Y R G PN +ELG VA LEGA AG+A ++G+GA Sbjct: 24 IYQTSAFSFSSLEELEGFYEGNSPYLYTRSGNPNTDELGDMVAVLEGAPAGVAAASGLGA 83
Query: 296 IIAAVMSICKQGDLIIVNPDVYGVTYEFFKTDMERFGIEVLFESIFEAHILENILQKNLG 475 I+A ++++ + GD II D+YG TY +++ FGI V F + +EN + Sbjct: 84 ILAGILAVAESGDHIIAAEDIYGGTYHLLNEELKFFGITVSFVDFSDPQEIENTI----- 138
Query: 476 EPSMGMIKRSVVVFLESITNPLVKVADISAIAKLCKNYAAMLVVDNTMA 622 ++ +++ ESITNP ++V +I + + K + ++DNT A Sbjct: 139 ------TPQTKLLYSESITNPFLRVENIKRMVTIAKTHNLYTMIDNTFA 181
>tr|A3UAN3|A3UAN3_9FLAO Cys/Met metabolism lyase (PLP-dependent) OS=Croceibacter atlanticus HTCC2559 GN=CA2559_12553 PE=3 SV=1 Length = 399
Score = 107 bits (268), Expect = 4e-22 Identities = 56/156 (35%), Positives = 89/156 (57%) Frame = +2
Query: 155 FESLEDFEDASFVYRRYGCPNAEELGAAVASLEGAEAGLATSTGMGAIIAAVMSICKQGD 334 F++ E + ++Y R+ P+ LG A+A++EG E +TGMGAI ++ +CKQGD Sbjct: 40 FDTFEGNAEGCYLYSRHSTPSNLYLGEALAAMEGTETANVAATGMGAITPVLLQLCKQGD 99
Query: 335 LIIVNPDVYGVTYEFFKTDMERFGIEVLFESIFEAHILENILQKNLGEPSMGMIKRSVVV 514 ++ + +YG TY F K R GIE F I + ++E + ++ + V+ Sbjct: 100 HVVSSRTIYGGTYAFLKNFTPRLGIETSFVDITKLDVVEAAITED-----------TKVL 148
Query: 515 FLESITNPLVKVADISAIAKLCKNYAAMLVVDNTMA 622 + ES++NPL++VADI +A L K Y LVVDNT + Sbjct: 149 YCESVSNPLLEVADIKGLAALAKKYNLKLVVDNTFS 184
>tr|Q8R9N2|Q8R9N2_THETN Cystathionine beta-lyases/cystathionine gamma-synthases OS=Thermoanaerobacter tengcongensis GN=MetC2 PE=3 SV=1 Length = 393
Score = 106 bits (265), Expect = 1e-21 Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 6/168 (3%) Frame = +2
Query: 131 IWQASVYDFESLEDFED------ASFVYRRYGCPNAEELGAAVASLEGAEAGLATSTGMG 292 I+Q SV+ F++LE+ D + ++Y R G PN + +A+LEGAEAG A ++GM Sbjct: 29 IYQTSVFTFDTLEEVYDYLDGNPSRYMYTRLGNPNQTAVEELIANLEGAEAGQACASGMA 88
Query: 293 AIIAAVMSICKQGDLIIVNPDVYGVTYEFFKTDMERFGIEVLFESIFEAHILENILQKNL 472 AI +A+++ GD II D+YG T F + +R GIE+ + +E ++ N Sbjct: 89 AISSALLAEVNSGDHIIAAKDIYGGTNSLFNLEFKRLGIEISLVDFSDLESVEKAIKPN- 147
Query: 473 GEPSMGMIKRSVVVFLESITNPLVKVADISAIAKLCKNYAAMLVVDNT 616 + V+++E +TNPL++V DI + K+ K + L+VDNT Sbjct: 148 ----------TKVIYMEIMTNPLIRVFDIEEVVKIAKRHGLKLIVDNT 185
>tr|B7R768|B7R768_9THEO Cys/Met metabolism PLP-dependent enzyme superfamily protein OS=Carboxydibrachium pacificum DSM 12653 GN=CDSM653_353 PE=4 SV=1 Length = 393
Score = 106 bits (264), Expect = 1e-21 Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 6/168 (3%) Frame = +2
Query: 131 IWQASVYDFESLEDFED------ASFVYRRYGCPNAEELGAAVASLEGAEAGLATSTGMG 292 I+Q SV+ F++LE+ D + ++Y R G PN + +A+LEGAEAG A ++GM Sbjct: 29 IYQTSVFTFDTLEEVYDYLDGNPSRYMYTRLGNPNQTAVEELIANLEGAEAGQACASGMA 88
Query: 293 AIIAAVMSICKQGDLIIVNPDVYGVTYEFFKTDMERFGIEVLFESIFEAHILENILQKNL 472 AI +A+++ GD II D+YG T F + +R GIE+ + +E ++ N Sbjct: 89 AISSALLAEVNSGDHIIAAKDIYGGTNSLFNLEFKRLGIEISLVDFSDLESVEKAIKPN- 147
Query: 473 GEPSMGMIKRSVVVFLESITNPLVKVADISAIAKLCKNYAAMLVVDNT 616 + V+++E +TNPL++V D+ + K+ K + L+VDNT Sbjct: 148 ----------TKVIYMEIMTNPLIRVFDVEEVVKIAKRHGLKLIVDNT 185
>tr|B0K2T5|B0K2T5_THEPX Cystathionine gamma-synthase OS=Thermoanaerobacter sp. (strain X514) GN=Teth514_1860 PE=3 SV=1 Length = 393
Score = 105 bits (262), Expect = 2e-21 Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 6/168 (3%) Frame = +2
Query: 131 IWQASVYDFESLEDFED------ASFVYRRYGCPNAEELGAAVASLEGAEAGLATSTGMG 292 I+Q SV+ F++LE+ D + ++Y R G PN + +ASLEGAEAG A S+GM Sbjct: 29 IYQTSVFTFDTLEEVYDYLGGNPSRYMYTRLGNPNQTAVEELIASLEGAEAGQACSSGMA 88
Query: 293 AIIAAVMSICKQGDLIIVNPDVYGVTYEFFKTDMERFGIEVLFESIFEAHILENILQKNL 472 AI +A+++ GD II D+YG T F + +R I+V + +E ++ N Sbjct: 89 AIFSALLAEVNSGDHIIAAKDIYGGTNSLFNAEFKRLNIDVTLVDFSDLEAVEKAIKPN- 147
Query: 473 GEPSMGMIKRSVVVFLESITNPLVKVADISAIAKLCKNYAAMLVVDNT 616 + V+++E +TNPL++V D+ +A + K + L+VDNT Sbjct: 148 ----------TKVIYMEIMTNPLIRVFDVVEVANIAKKHNIKLIVDNT 185
>tr|B0K8U0|B0K8U0_THEP3 Cystathionine gamma-synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=Teth39_0897 PE=3 SV=1 Length = 393
Score = 104 bits (260), Expect = 4e-21 Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 6/168 (3%) Frame = +2
Query: 131 IWQASVYDFESLEDFED------ASFVYRRYGCPNAEELGAAVASLEGAEAGLATSTGMG 292 I+Q SV+ F++LE+ D + ++Y R G PN + +ASLEGAEAG A S+GM Sbjct: 29 IYQTSVFTFDTLEEVYDYLGGNPSRYMYTRLGNPNQTAVEELIASLEGAEAGQACSSGMA 88
Query: 293 AIIAAVMSICKQGDLIIVNPDVYGVTYEFFKTDMERFGIEVLFESIFEAHILENILQKNL 472 AI +A+++ GD II D+YG T F + +R I+V + +E ++ N Sbjct: 89 AISSALLAEVNSGDHIIAAKDIYGGTNSLFNAEFKRLNIDVTLVDFSDLEAVEKAIKPN- 147
Query: 473 GEPSMGMIKRSVVVFLESITNPLVKVADISAIAKLCKNYAAMLVVDNT 616 + V+++E +TNPL++V D+ +A + K + L+VDNT Sbjct: 148 ----------TKVIYMEIMTNPLIRVFDVVEVANIAKKHNIKLIVDNT 185
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