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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961703
Clone id TST39A01NGRL0010_O02
Library
Length 659
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_O02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGAGAAGGAGAGAGAGAGAGAGACAGAGAGAGAGACAGGACGCGCGTTACTCTCAGCTCC
AACAGTGCCTTTACCACAGGGTTCATGGGCACGTCGGACAAAAAGCGGAGGCAAACTCCG
GATGGTAGTAAACGGGCTGTGAACGTTGGAGCTGCTACGGGAACCAACGGAACTGCAAGT
TTGTTAGACACAGCCCGAACAGTAGATTTGAGTACTTGCTCAGATAGTGACGATGGAGAC
TGGCAAAACACAAGCTCCGATAGTGATGATGAATACAGCTCTGCCAGCTTTGATGATGAT
GAGTCCTCGGGTGATGAAGGTGAGGGTACCACAGAAATTAACGAAGCAATACTGGACTAC
ATGGGGGCTTTGGAGAAAGAAAGAGAAGATGAGGAAAGAGGGGATTCTCTCACTGGTGGT
GGCGAAGAATCAAGGTCACCAAGAGCTGTCGTAGAGAGTGACTCTTCTGAAGATGAGGTA
CCATCACGCAACACAATTGGAAATGTGCCTCTTGAATGGTATAAGGATGAAAATCACATT
GGGTATGATCTGAGTGGAACGAAAATTAGCAGAAGGGAGAAAAAAGATCAACTTGATTCA
TTTCTTGCTCGCTCAGATAATTCCAAGGATTGGCGAAAAGTTTATGATGAGTACAATGA
■■Homology search results ■■ -
sp_hit_id Q14137
Definition sp|Q14137|BOP1_HUMAN Ribosome biogenesis protein BOP1 OS=Homo sapiens
Align length 55
Score (bit) 63.9
E-value 7.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961703|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_O02, 5'
         (659 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14137|BOP1_HUMAN Ribosome biogenesis protein BOP1 OS=Homo sa...    64   7e-10
sp|P97452|BOP1_MOUSE Ribosome biogenesis protein BOP1 OS=Mus mus...    60   8e-09
sp|Q04660|ERB1_YEAST Eukaryotic ribosome biogenesis protein 1 OS...    49   3e-05
sp|O74399|YOCD_SCHPO Uncharacterized WD repeat-containing protei...    36   0.21 
sp|P50859|CP51_CANGA Cytochrome P450 51 OS=Candida glabrata GN=E...    32   3.9  
sp|Q18GQ9|RFCL_HALWD Replication factor C large subunit OS=Haloq...    31   6.6  

>sp|Q14137|BOP1_HUMAN Ribosome biogenesis protein BOP1 OS=Homo
           sapiens GN=BOP1 PE=1 SV=2
          Length = 746

 Score = 63.9 bits (154), Expect = 7e-10
 Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
 Frame = +1

Query: 487 RNTIGNVPLEWYKDENHIGYDLSGTKISR-REKKDQLDSFLARSDNSKDWRKVYD 648
           RNT+GNVPLEWY D  H+GYDL G +I +    +D+LD FL + D+   WR V D
Sbjct: 133 RNTVGNVPLEWYDDFPHVGYDLDGRRIYKPLRTRDELDQFLDKMDDPDYWRTVQD 187


>sp|P97452|BOP1_MOUSE Ribosome biogenesis protein BOP1 OS=Mus
           musculus GN=Bop1 PE=1 SV=1
          Length = 732

 Score = 60.5 bits (145), Expect = 8e-09
 Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
 Frame = +1

Query: 487 RNTIGNVPLEWYKDENHIGYDLSGTKISR-REKKDQLDSFLARSDNSKDWRKVYDE 651
           RNT+GNVPL WY +  H+GYDL G +I +    +D+LD FL + D+   WR V D+
Sbjct: 119 RNTVGNVPLAWYDEFPHVGYDLDGKRIYKPLRTRDELDQFLDKMDDPDFWRTVQDK 174


>sp|Q04660|ERB1_YEAST Eukaryotic ribosome biogenesis protein 1
           OS=Saccharomyces cerevisiae GN=ERB1 PE=1 SV=1
          Length = 807

 Score = 48.5 bits (114), Expect = 3e-05
 Identities = 22/56 (39%), Positives = 33/56 (58%)
 Frame = +1

Query: 484 SRNTIGNVPLEWYKDENHIGYDLSGTKISRREKKDQLDSFLARSDNSKDWRKVYDE 651
           ++NTIGN+PL  Y +  HIGYD++G +I R  K   LD  L   +  + W  + D+
Sbjct: 153 TQNTIGNIPLSAYDEMPHIGYDINGKRIMRPAKGSALDQLLDSIELPEGWTGLLDK 208


>sp|O74399|YOCD_SCHPO Uncharacterized WD repeat-containing protein
           C4F6.13c OS=Schizosaccharomyces pombe GN=SPBC4F6.13c
           PE=1 SV=1
          Length = 736

 Score = 35.8 bits (81), Expect = 0.21
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 526 DEN-HIGYDLSGTKISRREKKDQLDSFLARSDNSKDWRKVYD 648
           DEN +I YD+ G KI+R      LDS +A  D  K W  + D
Sbjct: 121 DENLYINYDIDGKKITRPATPAALDSLIASIDKDKGWTGIVD 162


>sp|P50859|CP51_CANGA Cytochrome P450 51 OS=Candida glabrata
           GN=ERG11 PE=3 SV=1
          Length = 533

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
 Frame = +1

Query: 502 NVPLEWYKDENHIGYDLSGTKIS----RREKKD----QLDSFLARSDNSKDWRKVYDE 651
           N+PLE Y+  +H    +SGT +S    RREK D     L   L ++   KD  K+ D+
Sbjct: 246 NLPLEHYRKRDHAQQAISGTYMSLIKERREKNDIQNRDLIDELMKNSTYKDGTKMTDQ 303


>sp|Q18GQ9|RFCL_HALWD Replication factor C large subunit
           OS=Haloquadratum walsbyi (strain DSM 16790) GN=rfcL PE=3
           SV=1
          Length = 516

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
 Frame = +1

Query: 76  TGFMGTSDK-------KRRQTPDGSKRAVNVGAA----TGTNGTASLLDTARTVDLSTCS 222
           T F G  D        K  ++ D + R  N  A     +G + TAS  ++A   D ST +
Sbjct: 442 TNFTGNQDSDVDVQSHKSAESGDDTVRTANTPAEDHAQSGASETASATESASDSDASTDT 501

Query: 223 DSDDGDWQ 246
           D+DD D Q
Sbjct: 502 DADDDDGQ 509
tr_hit_id A9RDQ0
Definition tr|A9RDQ0|A9RDQ0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 106
Score (bit) 100.0
E-value 1.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961703|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_O02, 5'
         (659 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RDQ0|A9RDQ0_PHYPA Predicted protein OS=Physcomitrella paten...   100   1e-19
tr|A7R5L6|A7R5L6_VITVI Chromosome undetermined scaffold_1000, wh...    98   5e-19
tr|Q5DMX4|Q5DMX4_CUCME WD40 OS=Cucumis melo GN=WD40 PE=4 SV=1          97   1e-18
tr|Q9SIY9|Q9SIY9_ARATH Putative WD-40 repeat protein OS=Arabidop...    96   3e-18
tr|Q2PEP5|Q2PEP5_TRIPR Putative WD-40 repeat protein (Fragment) ...    94   7e-18
tr|B8B5N0|B8B5N0_ORYSI Putative uncharacterized protein OS=Oryza...    91   6e-17
tr|Q6Z3V6|Q6Z3V6_ORYSJ Putative transducin / WD-40 repeat protei...    91   8e-17
tr|Q0D6V7|Q0D6V7_ORYSJ Os07g0435400 protein OS=Oryza sativa subs...    91   8e-17
tr|A8ID74|A8ID74_CHLRE Predicted protein (Fragment) OS=Chlamydom...    82   3e-14
tr|A8XYW9|A8XYW9_CAEBR Putative uncharacterized protein OS=Caeno...    72   3e-11
tr|Q9U2A9|Q9U2A9_CAEEL Protein Y48B6A.1, confirmed by transcript...    72   4e-11
tr|A8PWB6|A8PWB6_BRUMA Bop1-prov protein, putative OS=Brugia mal...    71   5e-11
tr|A7SAP6|A7SAP6_NEMVE Predicted protein (Fragment) OS=Nematoste...    70   1e-10
tr|Q7ZXX9|Q7ZXX9_XENLA Bop1-prov protein OS=Xenopus laevis PE=2 ...    70   1e-10
tr|Q7T0W1|Q7T0W1_XENLA MGC68939 protein OS=Xenopus laevis PE=2 SV=1    69   2e-10
tr|Q1LXV3|Q1LXV3_DANRE Novel protein similar to vertebrate block...    69   2e-10
tr|A0JMQ0|A0JMQ0_DANRE Block of proliferation 1 OS=Danio rerio G...    69   2e-10
tr|A4IHS2|A4IHS2_XENTR LOC100124887 protein OS=Xenopus tropicali...    69   3e-10
tr|Q4RIX9|Q4RIX9_TETNG Chromosome undetermined SCAF15041, whole ...    67   7e-10
tr|B3RPK2|B3RPK2_TRIAD Putative uncharacterized protein (Fragmen...    67   1e-09
tr|Q54TD8|Q54TD8_DICDI WD40 repeat-containing protein OS=Dictyos...    64   6e-09
tr|Q96Q25|Q96Q25_HUMAN KM-PA-2 protein OS=Homo sapiens GN=KM-PA-...    64   8e-09
tr|B4DEN9|B4DEN9_HUMAN cDNA FLJ56617, highly similar to Ribosome...    64   8e-09
tr|B2RDN4|B2RDN4_HUMAN cDNA, FLJ96693, highly similar to Homo sa...    64   8e-09
tr|A8K3R2|A8K3R2_HUMAN cDNA FLJ78061, highly similar to Homo sap...    64   8e-09
tr|Q562C2|Q562C2_RAT Block of proliferation 1 OS=Rattus norvegic...    63   2e-08
tr|Q6WCQ5|Q6WCQ5_IXOSC Block of proliferation protein OS=Ixodes ...    63   2e-08
tr|B7PXW7|B7PXW7_IXOSC Block of proliferation protein, putative ...    63   2e-08
tr|B4MYI5|B4MYI5_DROWI GK22227 OS=Drosophila willistoni GN=GK222...    63   2e-08
tr|Q5KLN6|Q5KLN6_CRYNE RRNA processing-related protein, putative...    62   2e-08

>tr|A9RDQ0|A9RDQ0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_112018 PE=4 SV=1
          Length = 626

 Score =  100 bits (248), Expect = 1e-19
 Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 5/106 (4%)
 Frame = +1

Query: 355 DYMGA-----LEKEREDEERGDSLTGGGEESRSPRAXXXXXXXXXXXPSRNTIGNVPLEW 519
           DY+G+     +E+  E E++G+       +S +P             P RNTIG+VPLEW
Sbjct: 3   DYLGSAGPRDVEEAVEHEDQGNGAGEANGQSGNPTTAEESDSSEDEVPDRNTIGDVPLEW 62

Query: 520 YKDENHIGYDLSGTKISRREKKDQLDSFLARSDNSKDWRKVYDEYN 657
           YK+E+HIGY   G KI+++ K+DQLD+FL+R+D+  +W KVYDEYN
Sbjct: 63  YKNEDHIGYTKDGLKINKQAKRDQLDTFLSRTDDPNEWMKVYDEYN 108


>tr|A7R5L6|A7R5L6_VITVI Chromosome undetermined scaffold_1000, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00005276001 PE=4 SV=1
          Length = 674

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 46/101 (45%), Positives = 64/101 (63%)
 Frame = +1

Query: 355 DYMGALEKEREDEERGDSLTGGGEESRSPRAXXXXXXXXXXXPSRNTIGNVPLEWYKDEN 534
           DY+ A   +    +  +   GG  ES   +              RNTIG+VPLEWYKDE 
Sbjct: 65  DYVSADGDDSLHNDPSEENEGGSSESH--QGIEESDSSEDEVAPRNTIGDVPLEWYKDEE 122

Query: 535 HIGYDLSGTKISRREKKDQLDSFLARSDNSKDWRKVYDEYN 657
           H+GYD++G KI ++ ++D+LDSFLA +D+SK+WRK+YDEYN
Sbjct: 123 HVGYDIAGKKIKKKVRQDKLDSFLASADDSKNWRKIYDEYN 163


>tr|Q5DMX4|Q5DMX4_CUCME WD40 OS=Cucumis melo GN=WD40 PE=4 SV=1
          Length = 722

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 40/57 (70%), Positives = 51/57 (89%)
 Frame = +1

Query: 487 RNTIGNVPLEWYKDENHIGYDLSGTKISRREKKDQLDSFLARSDNSKDWRKVYDEYN 657
           RNT+G+VPLEWY+DE HIGYD+SG KI ++E++D+L SFLA +D+SK WRKVYDEYN
Sbjct: 114 RNTVGDVPLEWYRDEKHIGYDISGKKILKKEREDRLQSFLASADDSKSWRKVYDEYN 170


>tr|Q9SIY9|Q9SIY9_ARATH Putative WD-40 repeat protein OS=Arabidopsis
           thaliana GN=At2g40360 PE=2 SV=1
          Length = 775

 Score = 95.5 bits (236), Expect = 3e-18
 Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 18/124 (14%)
 Frame = +1

Query: 340 NEAILDYMGALEKEREDEER-----GDSLTGGGEESRSPRAXXXXXXXXXXXPSRNTIGN 504
           ++ +L++ G+++ E +D         +   G  E+S    A           PSRNT+GN
Sbjct: 101 DDDVLEHDGSIDNEDDDGSEHVGSDNNEEHGSDEDSERGEAVEESDSSEDEVPSRNTVGN 160

Query: 505 VPLEWYKDENHIGYDLSGTKISRREKKDQLDSFLARSDNSKD-W------------RKVY 645
           VPL+WY+DE HIGYDL+G KI+++EK+D+LDSFLA  D+SK  W            RK+Y
Sbjct: 161 VPLKWYEDEKHIGYDLTGKKITKKEKQDKLDSFLATIDDSKTCWCHNADESFWGFRRKIY 220

Query: 646 DEYN 657
           DEYN
Sbjct: 221 DEYN 224


>tr|Q2PEP5|Q2PEP5_TRIPR Putative WD-40 repeat protein (Fragment)
           OS=Trifolium pratense PE=2 SV=1
          Length = 738

 Score = 94.0 bits (232), Expect = 7e-18
 Identities = 43/95 (45%), Positives = 60/95 (63%)
 Frame = +1

Query: 373 EKEREDEERGDSLTGGGEESRSPRAXXXXXXXXXXXPSRNTIGNVPLEWYKDENHIGYDL 552
           E + ED+ + +  + G +  +                 RNTIG VPL+WY+DE HIGYD+
Sbjct: 89  ESQDEDDVKSEGGSEGSDIHQEGVGGDESDSSEDEVAPRNTIGEVPLKWYEDEPHIGYDI 148

Query: 553 SGTKISRREKKDQLDSFLARSDNSKDWRKVYDEYN 657
            G KI ++EK+D+L SFLA  D+SK+WRK+YDEYN
Sbjct: 149 KGKKIKKKEKEDKLGSFLANVDDSKNWRKIYDEYN 183


>tr|B8B5N0|B8B5N0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25805 PE=4 SV=1
          Length = 678

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 38/89 (42%), Positives = 61/89 (68%)
 Frame = +1

Query: 391 EERGDSLTGGGEESRSPRAXXXXXXXXXXXPSRNTIGNVPLEWYKDENHIGYDLSGTKIS 570
           E+ G+      +E  +P             P RNTIG+VPLEWYK+E HIGYD++G+KI 
Sbjct: 36  EDSGEGSDADSDEPDAPAVEESDSSEDEVAP-RNTIGDVPLEWYKNEEHIGYDITGSKIK 94

Query: 571 RREKKDQLDSFLARSDNSKDWRKVYDEYN 657
           +R+++ +++++L  +D++K+WRK+YDEYN
Sbjct: 95  KRDREGRIEAYLRNADDAKNWRKIYDEYN 123


>tr|Q6Z3V6|Q6Z3V6_ORYSJ Putative transducin / WD-40 repeat protein
           (Putative uncharacterized protein) OS=Oryza sativa
           subsp. japonica GN=P0673E01.26 PE=4 SV=1
          Length = 648

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 38/89 (42%), Positives = 61/89 (68%)
 Frame = +1

Query: 391 EERGDSLTGGGEESRSPRAXXXXXXXXXXXPSRNTIGNVPLEWYKDENHIGYDLSGTKIS 570
           E+ G+      +E  +P             P RNTIG+VPLEWYK+E HIGYD++G+KI 
Sbjct: 36  EDSGEGSDAESDEPDAPAVEESDSSEDEVAP-RNTIGDVPLEWYKNEEHIGYDITGSKIK 94

Query: 571 RREKKDQLDSFLARSDNSKDWRKVYDEYN 657
           +R+++ +++++L  +D++K+WRK+YDEYN
Sbjct: 95  KRDREGRIEAYLRNADDAKNWRKIYDEYN 123


>tr|Q0D6V7|Q0D6V7_ORYSJ Os07g0435400 protein OS=Oryza sativa subsp.
           japonica GN=Os07g0435400 PE=2 SV=1
          Length = 678

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 38/89 (42%), Positives = 61/89 (68%)
 Frame = +1

Query: 391 EERGDSLTGGGEESRSPRAXXXXXXXXXXXPSRNTIGNVPLEWYKDENHIGYDLSGTKIS 570
           E+ G+      +E  +P             P RNTIG+VPLEWYK+E HIGYD++G+KI 
Sbjct: 36  EDSGEGSDAESDEPDAPAVEESDSSEDEVAP-RNTIGDVPLEWYKNEEHIGYDITGSKIK 94

Query: 571 RREKKDQLDSFLARSDNSKDWRKVYDEYN 657
           +R+++ +++++L  +D++K+WRK+YDEYN
Sbjct: 95  KRDREGRIEAYLRNADDAKNWRKIYDEYN 123


>tr|A8ID74|A8ID74_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_111274 PE=4
           SV=1
          Length = 634

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = +1

Query: 481 PSRNTIGNVPLEWYKDENHIGYDLSGTKISRREKKDQLDSFLARSDNSKDWRKVYDEYN 657
           P+RNT+GNVPL WYKDE HIGYD+ G +I++ ++KD+L   L R+D+ K  R +YD YN
Sbjct: 9   PNRNTVGNVPLVWYKDEEHIGYDIEGARITKAQRKDRLQQLLDRNDSKKALRTIYDPYN 67


>tr|A8XYW9|A8XYW9_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG20902 PE=4 SV=1
          Length = 671

 Score = 72.0 bits (175), Expect = 3e-11
 Identities = 28/55 (50%), Positives = 43/55 (78%)
 Frame = +1

Query: 487 RNTIGNVPLEWYKDENHIGYDLSGTKISRREKKDQLDSFLARSDNSKDWRKVYDE 651
           RNTIGN+P++WY DE+HIGYD  G KI++  KK ++++FL + ++   WRKV+D+
Sbjct: 57  RNTIGNIPIQWYDDEDHIGYDKFGEKIAKPAKKGEIETFLEKMEDPDYWRKVFDK 111