DK961716 |
Clone id |
TST39A01NGRL0010_O15 |
Library |
TST39 |
Length |
643 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_O15. 5' end sequence. |
Accession |
DK961716 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2909Contig1 |
Sequence |
TGCATTCATGCCAACAAAAGGAAATGGTGCCATAGGTTCTTTAGAGTTTACAAAAGAGGA GAGGAAGGCCCTTGCATTGAAATCTGTTGAATCTCCTCCCAAATATGGAACTGCTGAACG GCAGAAAGTGATTGATGAGATCCATGAAGAAATGTTGAAACGAGTGCAAAAGCTTCCAGC AGAAGCTCCTAAAGAGGCTGAGAGTGAAGCTGCAAGCATGGGAACGGACAGTGACGGCTC CAAAAATATTGAAGAGACTGTAGCACATGTGGCAGTTTTGCCTGAGGTTCAATCCAGTGA AGATGTTCAGCCGATGGAGACAGCTGAAGAGCGGCCATCTGCTGTGGAATCAAGGGAAGT GAGATCTTCACCACCTGCAAGGCCAATTACCAGGCTGCAAGCTTCTGATGATCAGTTCTT AACATTGTTAGCAATCGGTCTCTTTGTCGCTCTAGCAGCTTTATTATTCAAGAAGTTCTA CCATTATTTCTCCTGGATCAGTTTCAATTGACGAGTTATCGTTGTATTTAAGCGTTGGGA GCTCTTGTACATTTGACTATCTGCATCACAGGCAGGTGTGGCAGAGGGTTGTGGAGCCGC TTGCTCACTACATGTAAGCAAGATGCAGTTGTTTCTTGGGTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LSP7 |
Definition |
sp|Q9LSP7|UBC32_ARATH Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana |
Align length |
54 |
Score (bit) |
77.0 |
E-value |
8.0e-14 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q10MI2 |
Definition |
tr|Q10MI2|Q10MI2_ORYSJ Os03g0308000 protein OS=Oryza sativa subsp. japonica |
Align length |
54 |
Score (bit) |
87.4 |
E-value |
7.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961716|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0010_O15, 5' (643 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q10MI2|Q10MI2_ORYSJ Os03g0308000 protein OS=Oryza sativa subs... 87 7e-16 tr|A3AH80|A3AH80_ORYSJ Putative uncharacterized protein OS=Oryza... 87 7e-16 tr|B8AMH5|B8AMH5_ORYSI Putative uncharacterized protein OS=Oryza... 87 1e-15 tr|A7Q8P3|A7Q8P3_VITVI Chromosome chr5 scaffold_64, whole genome... 79 2e-13 tr|A5BBF4|A5BBF4_VITVI Putative uncharacterized protein OS=Vitis... 79 2e-13 tr|B8LP14|B8LP14_PICSI Putative uncharacterized protein OS=Picea... 78 4e-13 tr|A1IW08|A1IW08_9LAMI Ubiquitin conjugating enzyme (Fragment) O... 77 7e-13 tr|B6TT84|B6TT84_MAIZE Ubiquitinating enzyme OS=Zea mays PE=2 SV=1 75 4e-12 tr|A8JBR3|A8JBR3_CHLRE Predicted protein (Fragment) OS=Chlamydom... 68 4e-10 tr|A9U0W3|A9U0W3_PHYPA Predicted protein OS=Physcomitrella paten... 66 2e-09 tr|Q6P7Y0|Q6P7Y0_DANRE Novel protein (Zgc:63554) OS=Danio rerio ... 47 0.001 tr|Q9I9B8|Q9I9B8_CHICK Non-Canonical UBiquitin Conjugating Enzym... 46 0.002 tr|Q5U4Q5|Q5U4Q5_XENTR Ubiquitin-conjugating enzyme E2, J1 (UBC6... 46 0.002 tr|Q4RDQ4|Q4RDQ4_TETNG Chromosome undetermined SCAF15992, whole ... 46 0.002 tr|B5X1W4|B5X1W4_SALSA Ubiquitin-conjugating enzyme E2 J1 OS=Sal... 46 0.002 tr|A3KMT1|A3KMT1_XENLA LOC100049091 protein OS=Xenopus laevis GN... 46 0.002 tr|Q3UDP8|Q3UDP8_MOUSE Putative uncharacterized protein OS=Mus m... 46 0.002 tr|Q3TV38|Q3TV38_MOUSE Putative uncharacterized protein OS=Mus m... 46 0.002 tr|B1AWT7|B1AWT7_MOUSE Ubiquitin-conjugating enzyme E2 J1 (Fragm... 46 0.002 tr|A3KG52|A3KG52_MOUSE Ubiquitin-conjugating enzyme E2 J1 (Fragm... 46 0.002 tr|A3KG50|A3KG50_MOUSE Ubiquitin-conjugating enzyme E2 J1 OS=Mus... 46 0.002 tr|Q06AB1|Q06AB1_PIG UB2J1 OS=Sus scrofa PE=2 SV=1 46 0.002 tr|Q53F25|Q53F25_HUMAN Ubiquitin-conjugating enzyme E2, J1 varia... 46 0.002 tr|B4DUF8|B4DUF8_HUMAN cDNA FLJ52165, highly similar to Ubiquiti... 46 0.002 tr|Q017C9|Q017C9_OSTTA Non-Canonical UBiquitin Conjugating Enzym... 45 0.004 tr|Q4RCM5|Q4RCM5_TETNG Chromosome undetermined SCAF18556, whole ... 45 0.005 tr|B6MS25|B6MS25_BRAFL Putative uncharacterized protein OS=Branc... 44 0.006 tr|B7QB87|B7QB87_IXOSC Ubiquitin protein ligase, putative (Fragm... 42 0.042 tr|B6NYE5|B6NYE5_BRAFL Putative uncharacterized protein OS=Branc... 42 0.042 tr|Q54U33|Q54U33_DICDI Putative uncharacterized protein OS=Dicty... 39 0.27
>tr|Q10MI2|Q10MI2_ORYSJ Os03g0308000 protein OS=Oryza sativa subsp. japonica GN=Os03g0308000 PE=2 SV=1 Length = 313
Score = 87.4 bits (215), Expect = 7e-16 Identities = 40/54 (74%), Positives = 49/54 (90%) Frame = +2
Query: 2 AFMPTKGNGAIGSLEFTKEERKALALKSVESPPKYGTAERQKVIDEIHEEMLKR 163 AFMPT G GA+GSL+F KE+R+ALA+KS E+PPK+G+AERQKVIDEIHE+ML R Sbjct: 120 AFMPTPGGGALGSLDFKKEDRRALAIKSRETPPKFGSAERQKVIDEIHEQMLSR 173
>tr|A3AH80|A3AH80_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_010152 PE=3 SV=1 Length = 295
Score = 87.4 bits (215), Expect = 7e-16 Identities = 40/54 (74%), Positives = 49/54 (90%) Frame = +2
Query: 2 AFMPTKGNGAIGSLEFTKEERKALALKSVESPPKYGTAERQKVIDEIHEEMLKR 163 AFMPT G GA+GSL+F KE+R+ALA+KS E+PPK+G+AERQKVIDEIHE+ML R Sbjct: 102 AFMPTPGGGALGSLDFKKEDRRALAIKSRETPPKFGSAERQKVIDEIHEQMLSR 155
>tr|B8AMH5|B8AMH5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11252 PE=4 SV=1 Length = 312
Score = 86.7 bits (213), Expect = 1e-15 Identities = 40/54 (74%), Positives = 49/54 (90%) Frame = +2
Query: 2 AFMPTKGNGAIGSLEFTKEERKALALKSVESPPKYGTAERQKVIDEIHEEMLKR 163 AFMPT G GA+GSL+F KE+R+ALA+KS E+PPK+G+AERQKVIDEIHE+ML R Sbjct: 119 AFMPTPGGGALGSLDFKKEDRRALAIKSRETPPKFGSAERQKVIDEIHEQMLGR 172
>tr|A7Q8P3|A7Q8P3_VITVI Chromosome chr5 scaffold_64, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00033129001 PE=3 SV=1 Length = 297
Score = 79.3 bits (194), Expect = 2e-13 Identities = 57/167 (34%), Positives = 78/167 (46%), Gaps = 8/167 (4%) Frame = +2
Query: 2 AFMPTKGNGAIGSLEFTKEERKALALKSVESPPKYGTAERQKVIDEIHEEMLKRVQKLXX 181 AFMPT NGA+GSL++ KEER ALA+KS E+ PK+GT ERQK+IDEIHE ML + + Sbjct: 119 AFMPTSPNGALGSLDYKKEERHALAIKSREAAPKFGTPERQKLIDEIHEYMLSKSPPV-P 177
Query: 182 XXXXXXXXXXXXMGTDSDGSKNIEETVAHVAVLPEVQSS-------EDVQPMETAEERPS 340 + +G N A +A E+ E+ P PS Sbjct: 178 QLNSSQAPEEPSTNREGEGQTNPPNGSA-IAAADELSDPRVADRIVEEEPPQVPLNANPS 236
Query: 341 AVESREVRSSPPARPITRLQ-ASDDQFLTXXXXXXXXXXXXXXFKKF 478 V + + +P+ R+Q +DD+ LT KKF Sbjct: 237 PVSRQASAARLLQKPMPRVQRQADDRLLTWAAVGLTIAIMVLLLKKF 283
>tr|A5BBF4|A5BBF4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020701 PE=3 SV=1 Length = 297
Score = 79.0 bits (193), Expect = 2e-13 Identities = 57/167 (34%), Positives = 77/167 (46%), Gaps = 8/167 (4%) Frame = +2
Query: 2 AFMPTKGNGAIGSLEFTKEERKALALKSVESPPKYGTAERQKVIDEIHEEMLKRVQKLXX 181 AFMPT NGA+GSL++ KEER ALA+KS E+ PK+GT ERQK+IDEIHE ML + + Sbjct: 119 AFMPTSPNGALGSLDYKKEERHALAIKSREAAPKFGTPERQKLIDEIHEYMLSKSPPV-P 177
Query: 182 XXXXXXXXXXXXMGTDSDGSKNIEETVAHVAVLPEVQSS-------EDVQPMETAEERPS 340 + +G N A +A E+ E+ P PS Sbjct: 178 QLNSSQAPEEPSTNREGEGQTNPPNGSA-IAAADELSDPRVADRIVEEEPPQVPLNANPS 236
Query: 341 AVESREVRSSPPARPITRLQ-ASDDQFLTXXXXXXXXXXXXXXFKKF 478 V + +P+ R+Q +DD+ LT KKF Sbjct: 237 PVSRQASAVRLLQKPVPRVQRQADDRLLTWAAVGLTIAIMVLLLKKF 283
>tr|B8LP14|B8LP14_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 307
Score = 78.2 bits (191), Expect = 4e-13 Identities = 35/54 (64%), Positives = 45/54 (83%) Frame = +2
Query: 2 AFMPTKGNGAIGSLEFTKEERKALALKSVESPPKYGTAERQKVIDEIHEEMLKR 163 AFMPTK GA+GSL+++KEER ALA+KS PPKYG A+RQ++IDE+HE ML + Sbjct: 118 AFMPTKPEGAVGSLDYSKEERTALAIKSRTHPPKYGNADRQRLIDEVHEYMLNK 171
>tr|A1IW08|A1IW08_9LAMI Ubiquitin conjugating enzyme (Fragment) OS=Phillyrea latifolia GN=ophe-6 PE=2 SV=1 Length = 167
Score = 77.4 bits (189), Expect = 7e-13 Identities = 47/120 (39%), Positives = 66/120 (55%) Frame = +2
Query: 2 AFMPTKGNGAIGSLEFTKEERKALALKSVESPPKYGTAERQKVIDEIHEEMLKRVQKLXX 181 AFMPT NGA+GSL++TKEE++ LA+KS E+ PK+G+ ERQK+IDEIHE ML + + Sbjct: 53 AFMPTNPNGALGSLDYTKEEKRDLAIKSREAAPKFGSPERQKLIDEIHEYMLSKAPPVPQ 112
Query: 182 XXXXXXXXXXXXMGTDSDGSKNIEETVAHVAVLPEVQSSEDVQPMETAEERPSAVESREV 361 + +N E V E S+ D++ AEE P+A S + Sbjct: 113 GSQGSKVQATTEENENQGSPQNAFEGV------EEELSNPDIEDGIVAEE-PNATPSNAI 165
>tr|B6TT84|B6TT84_MAIZE Ubiquitinating enzyme OS=Zea mays PE=2 SV=1 Length = 309
Score = 74.7 bits (182), Expect = 4e-12 Identities = 33/54 (61%), Positives = 45/54 (83%) Frame = +2
Query: 2 AFMPTKGNGAIGSLEFTKEERKALALKSVESPPKYGTAERQKVIDEIHEEMLKR 163 AFMPT GA+GSL++ E+R+ALA+KS E PPK+G+ +RQK+IDEIHE+ML + Sbjct: 120 AFMPTNPGGALGSLDYKPEDRRALAIKSREVPPKFGSPQRQKLIDEIHEQMLSK 173
>tr|A8JBR3|A8JBR3_CHLRE Predicted protein (Fragment) OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_185318 PE=3 SV=1 Length = 178
Score = 68.2 bits (165), Expect = 4e-10 Identities = 29/52 (55%), Positives = 43/52 (82%) Frame = +2
Query: 2 AFMPTKGNGAIGSLEFTKEERKALALKSVESPPKYGTAERQKVIDEIHEEML 157 AFMP+ GNGA+G+++FTK+ER+ LA +S P++G+AERQ+VID++H ML Sbjct: 120 AFMPSPGNGALGAIDFTKDERRILAARSRTELPRFGSAERQRVIDDMHARML 171
>tr|A9U0W3|A9U0W3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_153985 PE=3 SV=1 Length = 171
Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/48 (62%), Positives = 40/48 (83%) Frame = +2
Query: 2 AFMPTKGNGAIGSLEFTKEERKALALKSVESPPKYGTAERQKVIDEIH 145 AFMPTK +GA+GSL++TKEER+ LA+ S S PK+G AERQ +I+E+H Sbjct: 119 AFMPTKPDGALGSLDYTKEERRKLAINSRLSAPKFGNAERQALINEVH 166
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