DK961728 |
Clone id |
TST39A01NGRL0010_P04 |
Library |
TST39 |
Length |
542 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_P04. 5' end sequence. |
Accession |
DK961728 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL43Contig1 |
Sequence |
AAAAGTTGGCTATGCAGCTCAGTCCACCGGAGAGATGACAACAAGGATGACTTTCAAGTA TCGTATGAGGCAGCCAAGTTTTTCATAATTCTCTCAGAAGAGAGAAGATGATGTGCACAA AAGTATTAAATACAGTGTGTGGACAAGTACGCCAAATGGAAACAAACGATTGGACGAAGC TTACAGGAAGGCTCAGGAGAAATCAGAGGCACCTTCAACCTTGTGTCCGGTCTTCTTCTT TTTCTCGGTCAATTGCAGTGGCCAATTTTGCGGGGTGGCTGAGATGGTTGGGCCTGTTGA CTTTGGTAAGAACATGGATTTCTGGCTACAAGGGAAGTGGAATGGTTGCTTGCCTGTCGA ATGGCACATCATCAAGGATTTTTTTTTTCCCCCCCCCCGGCACATAATCCTGTCCAATAA AGAAAAGGGGGGGGGGACACACAGTCGTGACACTCGAGAGGTGCACTTCCATCAAGGCCT TGAAATGCTGAAAATATTCAAGTTTTTTCCCACAAGAACATCCTTACTCGACGACTTTGC AT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9BYJ9 |
Definition |
sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens |
Align length |
146 |
Score (bit) |
138.0 |
E-value |
2.0e-32 |
Report |
 |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5AJP6 |
Definition |
tr|A5AJP6|A5AJP6_VITVI Putative uncharacterized protein OS=Vitis vinifera |
Align length |
145 |
Score (bit) |
200.0 |
E-value |
3.0e-52 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961728|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0010_P04, 5' (542 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5AJP6|A5AJP6_VITVI Putative uncharacterized protein OS=Vitis... 200 3e-52 tr|A7NVV9|A7NVV9_VITVI Chromosome chr5 scaffold_2, whole genome ... 200 3e-52 tr|Q5QM96|Q5QM96_ORYSJ cDNA clone:J013046L18, full insert sequen... 206 5e-52 tr|Q5QM95|Q5QM95_ORYSJ Rubisco subunit binding-protein beta subu... 206 5e-52 tr|Q5QM94|Q5QM94_ORYSJ cDNA clone:J013144M15, full insert sequen... 206 5e-52 tr|A2ZWJ5|A2ZWJ5_ORYSJ Putative uncharacterized protein OS=Oryza... 206 5e-52 tr|A2WTS8|A2WTS8_ORYSI Putative uncharacterized protein OS=Oryza... 206 5e-52 tr|B4FF31|B4FF31_MAIZE Putative uncharacterized protein OS=Zea m... 204 2e-51 tr|A7QMM3|A7QMM3_VITVI Chromosome chr19 scaffold_126, whole geno... 203 4e-51 tr|A5ACY6|A5ACY6_VITVI Putative uncharacterized protein OS=Vitis... 203 4e-51 tr|Q8W311|Q8W311_ORYSA Putative RNA-binding protein OS=Oryza sat... 194 3e-49 tr|Q10CW7|Q10CW7_ORYSJ Os03g0748000 protein OS=Oryza sativa subs... 194 3e-49 tr|B8AJV8|B8AJV8_ORYSI Putative uncharacterized protein OS=Oryza... 194 3e-49 tr|Q9FPE7|Q9FPE7_ARATH Putative uncharacterized protein At1g7927... 192 1e-47 tr|O64526|O64526_ARATH YUP8H12R.13 protein OS=Arabidopsis thalia... 192 1e-47 tr|B8AMZ5|B8AMZ5_ORYSI Putative uncharacterized protein OS=Oryza... 189 3e-47 tr|A3AHC9|A3AHC9_ORYSJ Putative uncharacterized protein OS=Oryza... 189 3e-47 tr|Q10MA6|Q10MA6_ORYSJ Os03g0317000 protein OS=Oryza sativa subs... 189 3e-47 tr|A7P0B6|A7P0B6_VITVI Chromosome chr6 scaffold_3, whole genome ... 189 3e-47 tr|A7Q4I8|A7Q4I8_VITVI Chromosome chr9 scaffold_49, whole genome... 189 6e-47 tr|A5B5J0|A5B5J0_VITVI Putative uncharacterized protein OS=Vitis... 188 1e-46 tr|Q8H8C1|Q8H8C1_ORYSJ Putative RNA-binding protein (Putative un... 180 2e-46 tr|Q10RI4|Q10RI4_ORYSJ Os03g0158500 protein OS=Oryza sativa subs... 180 2e-46 tr|Q10RI3|Q10RI3_ORYSJ YT521-B-like family protein, expressed OS... 180 2e-46 tr|B8ANU7|B8ANU7_ORYSI Putative uncharacterized protein OS=Oryza... 180 2e-46 tr|Q10RI5|Q10RI5_ORYSJ YT521-B-like family protein, expressed OS... 180 2e-46 tr|Q10RI2|Q10RI2_ORYSJ YT521-B-like family protein, expressed OS... 180 2e-46 tr|A5BWE9|A5BWE9_VITVI Putative uncharacterized protein OS=Vitis... 181 3e-46 tr|A7QCG6|A7QCG6_VITVI Chromosome chr12 scaffold_78, whole genom... 181 3e-46 tr|Q9LDZ8|Q9LDZ8_ARATH Gb|AAF35955.1 OS=Arabidopsis thaliana PE=... 187 4e-46
>tr|A5AJP6|A5AJP6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038412 PE=4 SV=1 Length = 1960
Score = 200 bits (508), Expect(2) = 3e-52 Identities = 96/145 (66%), Positives = 110/145 (75%) Frame = +2
Query: 104 EDDVHKSIKYSVWTSTPNGNKRLDEAYRKAQEKSEAPSTLCPVFFFFSVNCSGQFCGVAE 283 EDDVHKSIKY+VW+STPNGNK+L+ AY AQ + CP+F FFSVN SGQFCGVAE Sbjct: 395 EDDVHKSIKYNVWSSTPNGNKKLENAYEDAQRIALGKRRGCPIFLFFSVNASGQFCGVAE 454
Query: 284 MVGPVDFGKNMDFWLQGKWNGCLPVEWHIIKDFFFPPPRHIILSNKEKGGGTHSRDTREV 463 M+GPVDF K+MDFW Q KW+G PV+WHIIKD RHIIL N E T+SRDT+E+ Sbjct: 455 MIGPVDFHKDMDFWQQDKWSGSFPVKWHIIKDVPNTNFRHIILENNENKPVTNSRDTQEI 514
Query: 464 HFHQGLEMLKIFKFFPTRTSLLDDF 538 F QGLEMLKIFK T+TSLLDDF Sbjct: 515 RFKQGLEMLKIFKNHTTKTSLLDDF 539
Score = 29.6 bits (65), Expect(2) = 3e-52 Identities = 13/19 (68%), Positives = 14/19 (73%) Frame = +1
Query: 40 NKDDFQVSYEAAKFFIILS 96 NKDDF V Y AKFF+I S Sbjct: 374 NKDDFPVDYVDAKFFVIKS 392
>tr|A7NVV9|A7NVV9_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019682001 PE=4 SV=1 Length = 416
Score = 200 bits (508), Expect(2) = 3e-52 Identities = 96/145 (66%), Positives = 110/145 (75%) Frame = +2
Query: 104 EDDVHKSIKYSVWTSTPNGNKRLDEAYRKAQEKSEAPSTLCPVFFFFSVNCSGQFCGVAE 283 EDDVHKSIKY+VW+STPNGNK+L+ AY AQ + CP+F FFSVN SGQFCGVAE Sbjct: 87 EDDVHKSIKYNVWSSTPNGNKKLENAYEDAQRIALGKRRGCPIFLFFSVNASGQFCGVAE 146
Query: 284 MVGPVDFGKNMDFWLQGKWNGCLPVEWHIIKDFFFPPPRHIILSNKEKGGGTHSRDTREV 463 M+GPVDF K+MDFW Q KW+G PV+WHIIKD RHIIL N E T+SRDT+E+ Sbjct: 147 MIGPVDFHKDMDFWQQDKWSGSFPVKWHIIKDVPNTNFRHIILENNENKPVTNSRDTQEI 206
Query: 464 HFHQGLEMLKIFKFFPTRTSLLDDF 538 F QGLEMLKIFK T+TSLLDDF Sbjct: 207 RFKQGLEMLKIFKNHTTKTSLLDDF 231
Score = 29.6 bits (65), Expect(2) = 3e-52 Identities = 13/19 (68%), Positives = 14/19 (73%) Frame = +1
Query: 40 NKDDFQVSYEAAKFFIILS 96 NKDDF V Y AKFF+I S Sbjct: 66 NKDDFPVDYVDAKFFVIKS 84
>tr|Q5QM96|Q5QM96_ORYSJ cDNA clone:J013046L18, full insert sequence OS=Oryza sativa subsp. japonica GN=B1144G04.45-2 PE=2 SV=1 Length = 609
Score = 206 bits (525), Expect = 5e-52 Identities = 98/145 (67%), Positives = 111/145 (76%) Frame = +2
Query: 104 EDDVHKSIKYSVWTSTPNGNKRLDEAYRKAQEKSEAPSTLCPVFFFFSVNCSGQFCGVAE 283 EDD+HKSIKY+VW STPNGNKRLD A++ AQE+ T CP+F FFSVN SGQFCGVAE Sbjct: 377 EDDIHKSIKYNVWASTPNGNKRLDNAFKLAQERVAEKGTKCPMFLFFSVNASGQFCGVAE 436
Query: 284 MVGPVDFGKNMDFWLQGKWNGCLPVEWHIIKDFFFPPPRHIILSNKEKGGGTHSRDTREV 463 MVGPVDF +NM+FW Q KWNG PV+WHIIKD P RHIIL N E T+SRDT+EV Sbjct: 437 MVGPVDFNRNMNFWQQDKWNGFFPVKWHIIKDVPNPQFRHIILENNENKPVTNSRDTQEV 496
Query: 464 HFHQGLEMLKIFKFFPTRTSLLDDF 538 F QG EML IFK F +TS+LDDF Sbjct: 497 KFPQGSEMLNIFKNFSCKTSILDDF 521
>tr|Q5QM95|Q5QM95_ORYSJ Rubisco subunit binding-protein beta subunit-like OS=Oryza sativa subsp. japonica GN=B1144G04.45-1 PE=4 SV=1 Length = 598
Score = 206 bits (525), Expect = 5e-52 Identities = 98/145 (67%), Positives = 111/145 (76%) Frame = +2
Query: 104 EDDVHKSIKYSVWTSTPNGNKRLDEAYRKAQEKSEAPSTLCPVFFFFSVNCSGQFCGVAE 283 EDD+HKSIKY+VW STPNGNKRLD A++ AQE+ T CP+F FFSVN SGQFCGVAE Sbjct: 366 EDDIHKSIKYNVWASTPNGNKRLDNAFKLAQERVAEKGTKCPMFLFFSVNASGQFCGVAE 425
Query: 284 MVGPVDFGKNMDFWLQGKWNGCLPVEWHIIKDFFFPPPRHIILSNKEKGGGTHSRDTREV 463 MVGPVDF +NM+FW Q KWNG PV+WHIIKD P RHIIL N E T+SRDT+EV Sbjct: 426 MVGPVDFNRNMNFWQQDKWNGFFPVKWHIIKDVPNPQFRHIILENNENKPVTNSRDTQEV 485
Query: 464 HFHQGLEMLKIFKFFPTRTSLLDDF 538 F QG EML IFK F +TS+LDDF Sbjct: 486 KFPQGSEMLNIFKNFSCKTSILDDF 510
>tr|Q5QM94|Q5QM94_ORYSJ cDNA clone:J013144M15, full insert sequence OS=Oryza sativa subsp. japonica GN=B1144G04.45-3 PE=2 SV=1 Length = 458
Score = 206 bits (525), Expect = 5e-52 Identities = 98/145 (67%), Positives = 111/145 (76%) Frame = +2
Query: 104 EDDVHKSIKYSVWTSTPNGNKRLDEAYRKAQEKSEAPSTLCPVFFFFSVNCSGQFCGVAE 283 EDD+HKSIKY+VW STPNGNKRLD A++ AQE+ T CP+F FFSVN SGQFCGVAE Sbjct: 226 EDDIHKSIKYNVWASTPNGNKRLDNAFKLAQERVAEKGTKCPMFLFFSVNASGQFCGVAE 285
Query: 284 MVGPVDFGKNMDFWLQGKWNGCLPVEWHIIKDFFFPPPRHIILSNKEKGGGTHSRDTREV 463 MVGPVDF +NM+FW Q KWNG PV+WHIIKD P RHIIL N E T+SRDT+EV Sbjct: 286 MVGPVDFNRNMNFWQQDKWNGFFPVKWHIIKDVPNPQFRHIILENNENKPVTNSRDTQEV 345
Query: 464 HFHQGLEMLKIFKFFPTRTSLLDDF 538 F QG EML IFK F +TS+LDDF Sbjct: 346 KFPQGSEMLNIFKNFSCKTSILDDF 370
>tr|A2ZWJ5|A2ZWJ5_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_002917 PE=4 SV=1 Length = 594
Score = 206 bits (525), Expect = 5e-52 Identities = 98/145 (67%), Positives = 111/145 (76%) Frame = +2
Query: 104 EDDVHKSIKYSVWTSTPNGNKRLDEAYRKAQEKSEAPSTLCPVFFFFSVNCSGQFCGVAE 283 EDD+HKSIKY+VW STPNGNKRLD A++ AQE+ T CP+F FFSVN SGQFCGVAE Sbjct: 362 EDDIHKSIKYNVWASTPNGNKRLDNAFKLAQERVAEKGTKCPMFLFFSVNASGQFCGVAE 421
Query: 284 MVGPVDFGKNMDFWLQGKWNGCLPVEWHIIKDFFFPPPRHIILSNKEKGGGTHSRDTREV 463 MVGPVDF +NM+FW Q KWNG PV+WHIIKD P RHIIL N E T+SRDT+EV Sbjct: 422 MVGPVDFNRNMNFWQQDKWNGFFPVKWHIIKDVPNPQFRHIILENNENKPVTNSRDTQEV 481
Query: 464 HFHQGLEMLKIFKFFPTRTSLLDDF 538 F QG EML IFK F +TS+LDDF Sbjct: 482 KFPQGSEMLNIFKNFSCKTSILDDF 506
>tr|A2WTS8|A2WTS8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03270 PE=4 SV=1 Length = 594
Score = 206 bits (525), Expect = 5e-52 Identities = 98/145 (67%), Positives = 111/145 (76%) Frame = +2
Query: 104 EDDVHKSIKYSVWTSTPNGNKRLDEAYRKAQEKSEAPSTLCPVFFFFSVNCSGQFCGVAE 283 EDD+HKSIKY+VW STPNGNKRLD A++ AQE+ T CP+F FFSVN SGQFCGVAE Sbjct: 362 EDDIHKSIKYNVWASTPNGNKRLDNAFKLAQERVAEKGTKCPMFLFFSVNASGQFCGVAE 421
Query: 284 MVGPVDFGKNMDFWLQGKWNGCLPVEWHIIKDFFFPPPRHIILSNKEKGGGTHSRDTREV 463 MVGPVDF +NM+FW Q KWNG PV+WHIIKD P RHIIL N E T+SRDT+EV Sbjct: 422 MVGPVDFNRNMNFWQQDKWNGFFPVKWHIIKDVPNPQFRHIILENNENKPVTNSRDTQEV 481
Query: 464 HFHQGLEMLKIFKFFPTRTSLLDDF 538 F QG EML IFK F +TS+LDDF Sbjct: 482 KFPQGSEMLNIFKNFSCKTSILDDF 506
>tr|B4FF31|B4FF31_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 338
Score = 204 bits (520), Expect = 2e-51 Identities = 101/162 (62%), Positives = 112/162 (69%) Frame = +2
Query: 53 FKYRMRQPSFS*FSQKREDDVHKSIKYSVWTSTPNGNKRLDEAYRKAQEKSEAPSTLCPV 232 F + Q F EDD+HKSIKY+VW STPNGNKRLD AYR AQE+ T CPV Sbjct: 94 FVTKYEQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDNAYRLAQERMAEKGTKCPV 153
Query: 233 FFFFSVNCSGQFCGVAEMVGPVDFGKNMDFWLQGKWNGCLPVEWHIIKDFFFPPPRHIIL 412 F FFSVN S QFCGVAEMVGPVDF +NM+FW Q KWNG V+WHIIKD P RHIIL Sbjct: 154 FLFFSVNASDQFCGVAEMVGPVDFNRNMNFWQQDKWNGFFSVKWHIIKDVPNPQFRHIIL 213
Query: 413 SNKEKGGGTHSRDTREVHFHQGLEMLKIFKFFPTRTSLLDDF 538 N E T+SRDT+EV F QG EML IFK F + S+LDDF Sbjct: 214 ENNENKPVTNSRDTQEVKFSQGTEMLNIFKNFTCKASILDDF 255
>tr|A7QMM3|A7QMM3_VITVI Chromosome chr19 scaffold_126, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002122001 PE=4 SV=1 Length = 269
Score = 203 bits (517), Expect = 4e-51 Identities = 95/145 (65%), Positives = 113/145 (77%) Frame = +2
Query: 104 EDDVHKSIKYSVWTSTPNGNKRLDEAYRKAQEKSEAPSTLCPVFFFFSVNCSGQFCGVAE 283 EDD+HKSIKY+VW STPNGNKRLD AY++A+E+ + CPVF FFSVN SGQFCGVAE Sbjct: 81 EDDIHKSIKYNVWASTPNGNKRLDGAYQEAKERMGDRGSKCPVFLFFSVNASGQFCGVAE 140
Query: 284 MVGPVDFGKNMDFWLQGKWNGCLPVEWHIIKDFFFPPPRHIILSNKEKGGGTHSRDTREV 463 M+G VDF KNMDFW Q KWNG PV+WHIIKD P RHIIL N + T+SRDT+EV Sbjct: 141 MIGRVDFNKNMDFWQQDKWNGFFPVKWHIIKDVPNPQLRHIILENNDNKPVTNSRDTQEV 200
Query: 464 HFHQGLEMLKIFKFFPTRTSLLDDF 538 F QG+E+L IFK + ++TS+LDDF Sbjct: 201 RFPQGIEILNIFKNYVSKTSILDDF 225
>tr|A5ACY6|A5ACY6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005095 PE=4 SV=1 Length = 592
Score = 203 bits (517), Expect = 4e-51 Identities = 95/145 (65%), Positives = 113/145 (77%) Frame = +2
Query: 104 EDDVHKSIKYSVWTSTPNGNKRLDEAYRKAQEKSEAPSTLCPVFFFFSVNCSGQFCGVAE 283 EDD+HKSIKY+VW STPNGNKRLD AY++A+E+ + CPVF FFSVN SGQFCGVAE Sbjct: 375 EDDIHKSIKYNVWASTPNGNKRLDGAYQEAKERMGDRGSKCPVFLFFSVNASGQFCGVAE 434
Query: 284 MVGPVDFGKNMDFWLQGKWNGCLPVEWHIIKDFFFPPPRHIILSNKEKGGGTHSRDTREV 463 M+G VDF KNMDFW Q KWNG PV+WHIIKD P RHIIL N + T+SRDT+EV Sbjct: 435 MIGRVDFNKNMDFWQQDKWNGFFPVKWHIIKDVPNPQLRHIILENNDNKPVTNSRDTQEV 494
Query: 464 HFHQGLEMLKIFKFFPTRTSLLDDF 538 F QG+E+L IFK + ++TS+LDDF Sbjct: 495 RFPQGIEILNIFKNYVSKTSILDDF 519
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