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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961731
Clone id TST39A01NGRL0010_P08
Library
Length 631
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0010_P08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTGCATAGAGATGGCATGGGCAAGGCCTTCTCCGACTCGAGCTGTCGCGCTTTTCAATTA
TCCACAGGTAGGATGTTTTCTGGCACAACGGAATGTGTTTGGCTCTTCTTCTTGCCGCTG
GAAATGTGTGCAGGCTATGGCTTTCTCTGCCAGCTCATTCTCCAAACAGAACAGTTGGAT
TGCCCTTTCCCTTTCCGGAGGAGGGGGAGGAAGGGGTCTGAAGCAACGGTGCTTCTGCTC
AACGAGTGGATCGCCACAACAGGCAGGAAGCAACCCATCAAATGCAGCACATTCATATCA
AGGCCAACAGGCCACTGGCAGCGGCTACATGGCACAACAGCAACAGAATATGCCTCCGCA
ACAGCCTGCATACCCCTCTGCCAACAGCTCGTCGAACCTTCAACAACCTCCACACGTTGC
TGCTGCTCCCATAACTCAAAGCACACATCAGCCCAATGCCTCATCTACTACCAATCCTGC
AGCAGGGGGGGGTGCACCTCCACCTCCTAGAACTAGTGCTGCTGCCGAGGTGATTGACAA
ATATCTTGGTCCGTCCACATTAAAGCTGGACAAGCGGGATGGAGAGGTCCCCCCCCTCCT
CCACCACCCCCACCCCCTCGTCGAAATTATG
■■Homology search results ■■ -
sp_hit_id Q9D300
Definition sp|Q9D300|RGF1C_MOUSE Ras-GEF domain-containing family member 1C OS=Mus musculus
Align length 55
Score (bit) 30.8
E-value 6.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961731|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_P08, 5'
         (631 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9D300|RGF1C_MOUSE Ras-GEF domain-containing family member 1C...    31   6.1  
sp|Q95KH6|RGF1C_MACFA Ras-GEF domain-containing family member 1C...    31   6.1  
sp|Q8N431|RGF1C_HUMAN Ras-GEF domain-containing family member 1C...    31   6.1  
sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavir...    31   6.1  
sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavir...    31   6.1  
sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronav...    31   6.1  
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronav...    31   6.1  

>sp|Q9D300|RGF1C_MOUSE Ras-GEF domain-containing family member 1C
           OS=Mus musculus GN=Rasgef1c PE=2 SV=1
          Length = 466

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +1

Query: 103 LFFLPLEMCAGYGFLCQLILQTEQLDCPFPFRRRGRKGSEATVLLLNEWIATTGR 267
           LF  P E+ A    +C L ++ +QLD P   + R RK     + LL EW  T  R
Sbjct: 72  LFIEPRELLAR---VCHLCIEQQQLDKPVLDKARVRKFGAKLLQLLAEWTETFPR 123


>sp|Q95KH6|RGF1C_MACFA Ras-GEF domain-containing family member 1C
           OS=Macaca fascicularis GN=RASGEF1C PE=2 SV=1
          Length = 466

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +1

Query: 103 LFFLPLEMCAGYGFLCQLILQTEQLDCPFPFRRRGRKGSEATVLLLNEWIATTGR 267
           LF  P E+ A    +C L ++ +QLD P   + R RK     + LL EW  T  R
Sbjct: 72  LFIEPRELLAR---VCHLCIEQQQLDKPVLDKARVRKFGPKLLQLLAEWTETFPR 123


>sp|Q8N431|RGF1C_HUMAN Ras-GEF domain-containing family member 1C
           OS=Homo sapiens GN=RASGEF1C PE=2 SV=2
          Length = 466

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +1

Query: 103 LFFLPLEMCAGYGFLCQLILQTEQLDCPFPFRRRGRKGSEATVLLLNEWIATTGR 267
           LF  P E+ A    +C L ++ +QLD P   + R RK     + LL EW  T  R
Sbjct: 72  LFIEPRELLAR---VCHLCIEQQQLDKPVLDKARVRKFGPKLLQLLAEWTETFPR 123


>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus
            (strain JHM) GN=1a PE=1 SV=1
          Length = 4474

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 322  RLHGTTATEYASATACIPLCQQLVEPSTT 408
            RL   TATEYAS +A + LC   V+P  T
Sbjct: 4321 RLQAGTATEYASNSAILSLCAFSVDPKKT 4349


>sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus
            (strain A59) GN=1a PE=1 SV=1
          Length = 4468

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 322  RLHGTTATEYASATACIPLCQQLVEPSTT 408
            RL   TATEYAS +A + LC   V+P  T
Sbjct: 4315 RLQAGTATEYASNSAILSLCAFSVDPKKT 4343


>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus
            (strain JHM) GN=rep PE=1 SV=1
          Length = 7180

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 322  RLHGTTATEYASATACIPLCQQLVEPSTT 408
            RL   TATEYAS +A + LC   V+P  T
Sbjct: 4321 RLQAGTATEYASNSAILSLCAFSVDPKKT 4349


>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus
            (strain A59) GN=rep PE=1 SV=1
          Length = 7176

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 322  RLHGTTATEYASATACIPLCQQLVEPSTT 408
            RL   TATEYAS +A + LC   V+P  T
Sbjct: 4315 RLQAGTATEYASNSAILSLCAFSVDPKKT 4343
tr_hit_id Q7RPV4
Definition tr|Q7RPV4|Q7RPV4_PLAYO Putative uncharacterized protein PY01351 OS=Plasmodium yoelii yoelii
Align length 69
Score (bit) 37.7
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961731|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0010_P08, 5'
         (631 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7RPV4|Q7RPV4_PLAYO Putative uncharacterized protein PY01351 ...    38   0.57 
tr|Q4Y8Z9|Q4Y8Z9_PLACH Putative uncharacterized protein (Fragmen...    37   0.97 
tr|Q4XSV8|Q4XSV8_PLACH Putative uncharacterized protein (Fragmen...    37   0.97 
tr|Q856N6|Q856N6_9CAUD Gp58 OS=Mycobacterium phage Corndog GN=58...    34   6.4  
tr|A0BX22|A0BX22_PARTE Chromosome undetermined scaffold_133, who...    34   8.3  

>tr|Q7RPV4|Q7RPV4_PLAYO Putative uncharacterized protein PY01351
           OS=Plasmodium yoelii yoelii GN=PY01351 PE=4 SV=1
          Length = 1103

 Score = 37.7 bits (86), Expect = 0.57
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
 Frame = -3

Query: 182 QSNCSVWRMSWQRKP*-----------PAHISSGKKKSQTHSVVPENILPVDN*KARQLE 36
           ++N S W  SW R P               +SS KKK +  SV P N    DN K ++L+
Sbjct: 325 KNNNSEWSWSWGRLPHLKIPNQASDNGSIILSSSKKKKKNRSVAPNNKFNTDNNKNKELK 384

Query: 35  SEKALPMPS 9
           +E  L +P+
Sbjct: 385 NEHLLSIPN 393


>tr|Q4Y8Z9|Q4Y8Z9_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC000057.00.0 PE=4 SV=1
          Length = 345

 Score = 37.0 bits (84), Expect = 0.97
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = -3

Query: 170 SVWRMSWQRKP*-----------PAHISSGKKKSQTHSVVPENILPVDN*KARQLESEKA 24
           S W  SW R P             A  SS KKK +  SV P N   +DN K ++ +++  
Sbjct: 264 SEWSWSWGRLPHLKVPNPPSDNGSAISSSNKKKKKNRSVAPSNKFSLDNNKNKEFKNDHH 323

Query: 23  LPMPS 9
           LP+P+
Sbjct: 324 LPIPN 328


>tr|Q4XSV8|Q4XSV8_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC000653.03.0 PE=4 SV=1
          Length = 90

 Score = 37.0 bits (84), Expect = 0.97
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = -3

Query: 170 SVWRMSWQRKP*-----------PAHISSGKKKSQTHSVVPENILPVDN*KARQLESEKA 24
           S W  SW R P             A  SS KKK +  SV P N   +DN K ++ +++  
Sbjct: 9   SEWSWSWGRLPHLKVPNPPSDNGSAISSSNKKKKKNRSVAPSNKFSLDNNKNKEFKNDHH 68

Query: 23  LPMPS 9
           LP+P+
Sbjct: 69  LPIPN 73


>tr|Q856N6|Q856N6_9CAUD Gp58 OS=Mycobacterium phage Corndog GN=58
           PE=4 SV=1
          Length = 583

 Score = 34.3 bits (77), Expect = 6.4
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +1

Query: 169 EQLDCPFPFRRRGRKGSEATVLLLNEWIATTGRKQPIKCSTFISRPTGHW 318
           + LDC      RG K  E T  L+ +WIA    K+P + S F +  TG W
Sbjct: 103 DPLDCDMTVEVRG-KTPERTAQLVRDWIAAWDAKKPGELSFFDTGGTGRW 151


>tr|A0BX22|A0BX22_PARTE Chromosome undetermined scaffold_133, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00032941001 PE=4 SV=1
          Length = 1402

 Score = 33.9 bits (76), Expect = 8.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 331  GTTATEYASATACIPLCQQLVEPSTTSTRCCCSH 432
            GTT+   +S  AC P CQ  V P TT T C   +
Sbjct: 1304 GTTSVTTSSCFACQPECQTCVAPGTTCTSCIAGY 1337