DK961831 |
Clone id |
TST39A01NGRL0011_D20 |
Library |
TST39 |
Length |
623 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_D20. 5' end sequence. |
Accession |
DK961831 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL914Contig1 |
Sequence |
GCACATTCTGCTCTCCCTCTCTCGAAGACATTCACGCACCCGCCACAGACTCTCTCTCTT CGTTGCATTTGCGGCCAAGGGTTCGTCTAAGGAGACATGGAGTCTGCAACCCTTGCCGGG GGCTCTTCGTGCAGAGTTTCGGAGCATTCTGGTTTGCTGGACGGTTCTGGGCTTCGCCCT GCTCGAGCCCACCTCAATCGGCTTCTGCATCACCATCGTCCTTTACAAAGCCATCCTACC AGCAGGCTTGAGGTATATGCAGGTGTGGGAAATACATTTGGAAATTTGTTTCGAGTGACC ACATATGGCGAGTCACATGGTGGAGGTGTTGGTTGTGTCATTGATGGGGTTCCTCCAAGA CTACCGCTCACTGAAGCAGACATGCAGTTTGAGCTGGATAGGAGGAGGCCAGGTCAAAGC CGCATCACAACTCCTCGAAAGGAGACCGATACCTGCTCAATATTGTCTGGTGTTGCGGAC GGTCTTACCTTGGGAACTCCAATTGCCGTGAACGTGCCAAATACAGATCAAAGAGGAGGG GACTATCAAGAAATGTCGCTTGCCTACAGACCATCCCATGCAGATGCTACCTATGATTTC AAGTATGGGGTTCGGGCTGTTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q42885 |
Definition |
sp|Q42885|AROC2_SOLLC Chorismate synthase 2, chloroplastic OS=Solanum lycopersicum |
Align length |
126 |
Score (bit) |
219.0 |
E-value |
7.0e-57 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961831|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0011_D20, 5' (623 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q42885|AROC2_SOLLC Chorismate synthase 2, chloroplastic OS=So... 219 7e-57 sp|Q42884|AROC1_SOLLC Chorismate synthase 1, chloroplastic OS=So... 218 3e-56 sp|P27793|AROC_CORSE Chorismate synthase, chloroplastic OS=Coryd... 204 3e-52 sp|P57720|AROC_ARATH Chorismate synthase, chloroplastic OS=Arabi... 201 3e-51 sp|Q31RS5|AROC_SYNE7 Chorismate synthase OS=Synechococcus elonga... 189 8e-48 sp|Q5N2I0|AROC_SYNP6 Chorismate synthase OS=Synechococcus sp. (s... 187 5e-47 sp|Q8DLM1|AROC_THEEB Chorismate synthase OS=Thermosynechococcus ... 180 6e-45 sp|B0C2W2|AROC_ACAM1 Chorismate synthase OS=Acaryochloris marina... 179 1e-44 sp|Q110N5|AROC_TRIEI Chorismate synthase OS=Trichodesmium erythr... 176 7e-44 sp|P23353|AROC_SYNY3 Chorismate synthase OS=Synechocystis sp. (s... 175 1e-43 sp|Q3MFM3|AROC_ANAVT Chorismate synthase OS=Anabaena variabilis ... 175 1e-43 sp|Q8YYP9|AROC_ANASP Chorismate synthase OS=Anabaena sp. (strain... 175 1e-43 sp|Q2JLD4|AROC_SYNJB Chorismate synthase OS=Synechococcus sp. GN... 172 2e-42 sp|Q2JXD0|AROC_SYNJA Chorismate synthase OS=Synechococcus sp. (s... 171 4e-42 sp|B0JWQ2|AROC_MICAN Chorismate synthase OS=Microcystis aerugino... 170 5e-42 sp|A5GIL9|AROC_SYNPW Chorismate synthase OS=Synechococcus sp. (s... 166 9e-41 sp|Q0ID82|AROC_SYNS3 Chorismate synthase OS=Synechococcus sp. (s... 166 1e-40 sp|A5GW34|AROC_SYNR3 Chorismate synthase OS=Synechococcus sp. (s... 164 3e-40 sp|Q0BVN0|AROC_GRABC Chorismate synthase OS=Granulibacter bethes... 162 1e-39 sp|Q7U9F0|AROC_SYNPX Chorismate synthase OS=Synechococcus sp. (s... 162 2e-39 sp|Q3AMV2|AROC_SYNSC Chorismate synthase OS=Synechococcus sp. (s... 161 2e-39 sp|Q3AUR6|AROC_SYNS9 Chorismate synthase OS=Synechococcus sp. (s... 159 1e-38 sp|A9H0U2|AROC_GLUDA Chorismate synthase OS=Gluconacetobacter di... 158 2e-38 sp|Q7V4Y9|AROC_PROMM Chorismate synthase OS=Prochlorococcus mari... 158 2e-38 sp|A2CCA2|AROC_PROM3 Chorismate synthase OS=Prochlorococcus mari... 158 2e-38 sp|A5FY49|AROC_ACICJ Chorismate synthase OS=Acidiphilium cryptum... 158 2e-38 sp|Q2RR25|AROC_RHORT Chorismate synthase OS=Rhodospirillum rubru... 156 9e-38 sp|Q07HS5|AROC_RHOP5 Chorismate synthase OS=Rhodopseudomonas pal... 155 1e-37 sp|Q5FPG9|AROC_GLUOX Chorismate synthase OS=Gluconobacter oxydan... 155 2e-37 sp|P58729|AROC_SALTY Chorismate synthase OS=Salmonella typhimuri... 155 2e-37
>sp|Q42885|AROC2_SOLLC Chorismate synthase 2, chloroplastic OS=Solanum lycopersicum GN=CS2 PE=2 SV=1 Length = 431
Score = 219 bits (559), Expect = 7e-57 Identities = 105/126 (83%), Positives = 112/126 (88%) Frame = +1
Query: 244 RLEVYAGVGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSR 423 RLE+ A GNTFGN FRVTT+GESHGGGVGC+IDG PPRLPL+E+DMQ ELDRRRPGQSR Sbjct: 43 RLEIQAA-GNTFGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSR 101
Query: 424 ITTPRKETDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFK 603 ITTPRKETDTC I SG ADGLT G+PI V VPNTDQRG DY EMSLAYRPSHADATYDFK Sbjct: 102 ITTPRKETDTCKISSGTADGLTTGSPIKVEVPNTDQRGNDYSEMSLAYRPSHADATYDFK 161
Query: 604 YGVRAV 621 YGVR+V Sbjct: 162 YGVRSV 167
>sp|Q42884|AROC1_SOLLC Chorismate synthase 1, chloroplastic OS=Solanum lycopersicum GN=CS1 PE=2 SV=1 Length = 440
Score = 218 bits (554), Expect = 3e-56 Identities = 104/126 (82%), Positives = 112/126 (88%) Frame = +1
Query: 244 RLEVYAGVGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSR 423 RLE+ A G+TFGN FRVTT+GESHGGGVGC+IDG PPRLPL+E+DMQ ELDRRRPGQSR Sbjct: 49 RLEIQAA-GSTFGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSR 107
Query: 424 ITTPRKETDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFK 603 ITTPRKETDTC I SG ADGLT G+PI V VPNTDQRG DY EMSLAYRPSHADATYDFK Sbjct: 108 ITTPRKETDTCKISSGTADGLTTGSPIKVEVPNTDQRGNDYSEMSLAYRPSHADATYDFK 167
Query: 604 YGVRAV 621 YGVR+V Sbjct: 168 YGVRSV 173
>sp|P27793|AROC_CORSE Chorismate synthase, chloroplastic OS=Corydalis sempervirens PE=1 SV=1 Length = 447
Score = 204 bits (519), Expect = 3e-52 Identities = 93/118 (78%), Positives = 106/118 (89%) Frame = +1
Query: 268 GNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKET 447 G++FG +F+VTTYGESHGGGVGCVIDG PPR P++EAD+Q +LDRRRPGQSRITTPRKET Sbjct: 60 GSSFGKVFQVTTYGESHGGGVGCVIDGCPPRFPISEADIQSDLDRRRPGQSRITTPRKET 119
Query: 448 DTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVRAV 621 DTC I SGVADG T G+PI ++VPNTDQRG DY EM+ AYRPSHADATYDFKYGVR+V Sbjct: 120 DTCKIYSGVADGFTTGSPIHISVPNTDQRGNDYSEMAKAYRPSHADATYDFKYGVRSV 177
>sp|P57720|AROC_ARATH Chorismate synthase, chloroplastic OS=Arabidopsis thaliana GN=EMB1144 PE=2 SV=2 Length = 436
Score = 201 bits (511), Expect = 3e-51 Identities = 92/118 (77%), Positives = 107/118 (90%) Frame = +1
Query: 268 GNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKET 447 G+++G FRV+T+GESHGGGVGC+IDG PPR+PLTE+D+QF+LDRRRPGQSRITTPRKET Sbjct: 52 GSSYGTHFRVSTFGESHGGGVGCIIDGCPPRIPLTESDLQFDLDRRRPGQSRITTPRKET 111
Query: 448 DTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVRAV 621 DTC I SGV++G+T GTPI V VPNTDQRG DY EMS+AYRPSHADATYD KYGVR+V Sbjct: 112 DTCRISSGVSEGMTTGTPIHVFVPNTDQRGLDYSEMSVAYRPSHADATYDMKYGVRSV 169
>sp|Q31RS5|AROC_SYNE7 Chorismate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=aroC PE=3 SV=1 Length = 362
Score = 189 bits (481), Expect = 8e-48 Identities = 88/119 (73%), Positives = 103/119 (86%) Frame = +1
Query: 265 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 444 +G++FG+LFR++T+GESHGGGVG VIDG PPRL ++EA++QFELDRRRPGQS+ITTPRKE Sbjct: 1 MGSSFGHLFRISTFGESHGGGVGVVIDGCPPRLEISEAEIQFELDRRRPGQSKITTPRKE 60
Query: 445 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVRAV 621 D C ILSGV DG TLGTPIA+ V N DQR DY EM +AYRPSHADATYD KYG+RAV Sbjct: 61 ADQCEILSGVVDGKTLGTPIAIVVRNKDQRSQDYSEMQVAYRPSHADATYDAKYGIRAV 119
>sp|Q5N2I0|AROC_SYNP6 Chorismate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=aroC PE=3 SV=1 Length = 362
Score = 187 bits (474), Expect = 5e-47 Identities = 87/119 (73%), Positives = 102/119 (85%) Frame = +1
Query: 265 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 444 +G++FG+LFR++T+GESHGGGVG VIDG PPRL ++EA++QFELDRRRPGQS+ITTPRKE Sbjct: 1 MGSSFGHLFRISTFGESHGGGVGVVIDGCPPRLEISEAEIQFELDRRRPGQSKITTPRKE 60
Query: 445 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVRAV 621 D C ILSGV DG TL TPIA+ V N DQR DY EM +AYRPSHADATYD KYG+RAV Sbjct: 61 ADQCEILSGVVDGKTLDTPIAIVVRNKDQRSQDYSEMQVAYRPSHADATYDAKYGIRAV 119
>sp|Q8DLM1|AROC_THEEB Chorismate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=aroC PE=3 SV=1 Length = 363
Score = 180 bits (456), Expect = 6e-45 Identities = 85/117 (72%), Positives = 98/117 (83%) Frame = +1
Query: 265 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 444 +GNTFG+LFRVTT+GESHGGGVG V+DG PPRL L+E D+Q ELDRRRPGQSR+TTPR+E Sbjct: 1 MGNTFGHLFRVTTFGESHGGGVGVVVDGCPPRLELSEVDIQKELDRRRPGQSRLTTPRQE 60
Query: 445 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVR 615 +D C ILSGV +G TLGTPIA+ V N D R DY EM+ YRPSHADATYD KYG+R Sbjct: 61 SDRCEILSGVFEGKTLGTPIAILVRNKDTRPEDYAEMAQVYRPSHADATYDAKYGIR 117
>sp|B0C2W2|AROC_ACAM1 Chorismate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=aroC PE=3 SV=1 Length = 364
Score = 179 bits (454), Expect = 1e-44 Identities = 83/117 (70%), Positives = 96/117 (82%) Frame = +1
Query: 265 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 444 +GNTFG+LFR+TT+GESHGGGVG VIDG PP++ + D+QFELDRRRPGQSRITTPRKE Sbjct: 1 MGNTFGHLFRITTFGESHGGGVGVVIDGCPPQIEIAAEDIQFELDRRRPGQSRITTPRKE 60
Query: 445 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVR 615 TDTC I+SG+ G TLGTPI + V N D R DY EM+ YRPSHADATYD KYG+R Sbjct: 61 TDTCEIVSGMFQGKTLGTPITILVRNKDTRPQDYSEMAQVYRPSHADATYDAKYGIR 117
>sp|Q110N5|AROC_TRIEI Chorismate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=aroC PE=3 SV=1 Length = 370
Score = 176 bits (447), Expect = 7e-44 Identities = 81/117 (69%), Positives = 98/117 (83%) Frame = +1
Query: 265 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 444 +GN FG+LFRVTT+GESHGGGVG +IDG PP+L + ++Q+ELDRRRPGQS+ITTPRKE Sbjct: 1 MGNIFGHLFRVTTFGESHGGGVGVIIDGCPPKLEINVKEIQYELDRRRPGQSKITTPRKE 60
Query: 445 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVR 615 +DTC ILSGV +G TLGTPI + V N D R DYQ+M++ YRPSHADATYD KYG+R Sbjct: 61 SDTCEILSGVFEGQTLGTPIMIWVRNKDARPQDYQDMAIKYRPSHADATYDAKYGIR 117
>sp|P23353|AROC_SYNY3 Chorismate synthase OS=Synechocystis sp. (strain PCC 6803) GN=aroC PE=3 SV=2 Length = 362
Score = 175 bits (444), Expect = 1e-43 Identities = 80/117 (68%), Positives = 97/117 (82%) Frame = +1
Query: 265 VGNTFGNLFRVTTYGESHGGGVGCVIDGVPPRLPLTEADMQFELDRRRPGQSRITTPRKE 444 +GNTFG+LFR+TT+GESHGGGVG +IDG PPRL ++ ++Q +LDRRRPGQS+ITTPRKE Sbjct: 1 MGNTFGSLFRITTFGESHGGGVGVIIDGCPPRLEISPEEIQVDLDRRRPGQSKITTPRKE 60
Query: 445 TDTCSILSGVADGLTLGTPIAVNVPNTDQRGGDYQEMSLAYRPSHADATYDFKYGVR 615 D C ILSGV +G TLGTPIA+ V N D R DY EM++ YRPSHADATY+ KYG+R Sbjct: 61 ADQCEILSGVFEGKTLGTPIAILVRNKDARSQDYNEMAVKYRPSHADATYEAKYGIR 117
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RTV8 |
Definition |
tr|A9RTV8|A9RTV8_PHYPA Chorismate synthase OS=Physcomitrella patens subsp. patens |
Align length |
126 |
Score (bit) |
225.0 |
E-value |
1.0e-57 |
Report |
|