DK961846 |
Clone id |
TST39A01NGRL0011_E11 |
Library |
TST39 |
Length |
660 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_E11. 5' end sequence. |
Accession |
DK961846 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL100Contig1 |
Sequence |
TTTTTTTTTTTTTTTGCAAAATACAAAAAGCATGAACTCAATGATAAAACTTGTGCCTTC CACCATACAAAACTTAGGAAACTCAATTCATCAGTATTACAATGCCTATTTTTCAAAAAT CTTTGAAGCAGTATCACTCAGGACTAAACTGCCAGCCAAGGTTCTTCCTGAACCTACTCT TCCTAATGAAGGAATCCGCAATAGAAGGCACAACTAGCAATGCGCAAAATTCATAGAAGG CGGGCACTAAAATTTAAGCACCAACCAACTCCATCTCCACCTTGGGCTCTGCATCCTCCG CAGGCCTCTCAACCTTTACACCAACGTCCTCTGAATAATCCCCATGTACCTCCATCAGCT TCCCCAAATCAAATTTGTGTGCTTTCAGAATTTTTACTTTTCTAATGTAAATGTTTTGCA GAGGATAAATGCCTGCAGTGGCCTTCTCAATCTCCTTTCCAATAGCCTCAGGTATAAACT TAGCCACAAGATCCTTCAGGTCACAAGATTGAGCTTCACGGACCATTATCTCAATCATTT TCTTACGGATCTGTCGAATTTGACTCGTCTGAGCATAGCAAGTCTTCTTAATTTGATTGG GGCGCTTTTTTGTGAAGGCAATACAAAATAACCTCAAAGTGTAGTTGTCAGTGGTCTTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9CAV0 |
Definition |
sp|Q9CAV0|RS3A1_ARATH 40S ribosomal protein S3a-1 OS=Arabidopsis thaliana |
Align length |
135 |
Score (bit) |
215.0 |
E-value |
1.0e-55 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961846|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0011_E11, 5' (645 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9CAV0|RS3A1_ARATH 40S ribosomal protein S3a-1 OS=Arabidopsis... 215 1e-55 sp|Q42262|RS3A2_ARATH 40S ribosomal protein S3a-2 OS=Arabidopsis... 213 7e-55 sp|P49198|RS3A_HELAN 40S ribosomal protein S3a OS=Helianthus ann... 212 1e-54 sp|P33444|RS3A_CATRO 40S ribosomal protein S3a OS=Catharanthus r... 207 3e-53 sp|P49396|RS3A_BRARA 40S ribosomal protein S3a OS=Brassica rapa ... 202 1e-51 sp|P49397|RS3A_ORYSJ 40S ribosomal protein S3a OS=Oryza sativa s... 201 4e-51 sp|Q9XEG7|RS3A_TORRU 40S ribosomal protein S3a OS=Tortula rurali... 161 2e-39 sp|Q98TX2|RS3A_OPHHA 40S ribosomal protein S3a OS=Ophiophagus ha... 160 5e-39 sp|Q642T2|RS3A_XENTR 40S ribosomal protein S3a OS=Xenopus tropic... 159 1e-38 sp|Q801S3|RS3A_XENLA 40S ribosomal protein S3a OS=Xenopus laevis... 159 2e-38 sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a OS=Oryzias latipe... 159 2e-38 sp|Q4R4Z6|RS3A_MACFA 40S ribosomal protein S3a OS=Macaca fascicu... 159 2e-38 sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a OS=Homo sapiens G... 159 2e-38 sp|P61246|RS3A_FELCA 40S ribosomal protein S3a (Fragment) OS=Fel... 159 2e-38 sp|Q56JV9|RS3A_BOVIN 40S ribosomal protein S3a OS=Bos taurus GN=... 159 2e-38 sp|Q4T8S6|RS3A_TETNG 40S ribosomal protein S3a OS=Tetraodon nigr... 158 2e-38 sp|Q6PBY1|RS3A_DANRE 40S ribosomal protein S3a OS=Danio rerio GN... 158 3e-38 sp|P49242|RS3A_RAT 40S ribosomal protein S3a OS=Rattus norvegicu... 157 3e-38 sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a OS=Mus musculus G... 157 3e-38 sp|Q6DV02|RS3A_GECJA 40S ribosomal protein S3a OS=Gecko japonicu... 157 3e-38 sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a OS=Eimeria tenell... 155 1e-37 sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a OS=Caenorhabditis... 146 1e-34 sp|P49395|RS3A_APLCA 40S ribosomal protein S3a OS=Aplysia califo... 145 1e-34 sp|P40910|RS3A_CANAL 40S ribosomal protein S3aE OS=Candida albic... 143 7e-34 sp|O94438|RS3B_SCHPO 40S ribosomal protein S3aE-B OS=Schizosacch... 143 9e-34 sp|Q09781|RS3A_SCHPO 40S ribosomal protein S3aE-A OS=Schizosacch... 141 3e-33 sp|P23248|RS3B_YEAST 40S ribosomal protein S1-B OS=Saccharomyces... 131 3e-30 sp|P33442|RS3A_YEAST 40S ribosomal protein S1-A OS=Saccharomyces... 130 8e-30 sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a OS=Anopheles gamb... 127 4e-29 sp|P55830|RS3A_DROME 40S ribosomal protein S3a OS=Drosophila mel... 123 9e-28
>sp|Q9CAV0|RS3A1_ARATH 40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=2 SV=3 Length = 262
Score = 215 bits (548), Expect = 1e-55 Identities = 106/135 (78%), Positives = 123/135 (91%), Gaps = 1/135 (0%) Frame = -3
Query: 643 KTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAK 464 KTTD+YTLRLFCIAFTK+R NQ+K+TCYAQ+SQIRQIR+KM +IMVREA SCDLKDLVAK Sbjct: 128 KTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAK 187
Query: 463 FIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAHKFDLGKLMEVHGDYS-EDVGVKVERP 287 FIPEAIG+EIEKAT GIYPLQN++IRKVKILKA KFDLGKLM+VHGDYS EDVGVKV+RP Sbjct: 188 FIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRP 247
Query: 286 AEDAEPKVEMELVGA 242 A++ + E++GA Sbjct: 248 ADEMAVEEPTEIIGA 262
>sp|Q42262|RS3A2_ARATH 40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3 Length = 262
Score = 213 bits (542), Expect = 7e-55 Identities = 104/135 (77%), Positives = 122/135 (90%), Gaps = 1/135 (0%) Frame = -3
Query: 643 KTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAK 464 KTTD YTLR+FCIAFTK+R NQ+K+TCYAQ+SQIRQIR+KM EIMV+EA SCDLK+LVAK Sbjct: 128 KTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAK 187
Query: 463 FIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAHKFDLGKLMEVHGDY-SEDVGVKVERP 287 FIPEAIG+EIEKAT GIYPLQN++IRKVKILKA KFDLGKLMEVHGDY +EDVGVKV+RP Sbjct: 188 FIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRP 247
Query: 286 AEDAEPKVEMELVGA 242 A++ + E++GA Sbjct: 248 ADETMVEEPTEIIGA 262
>sp|P49198|RS3A_HELAN 40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2 Length = 260
Score = 212 bits (540), Expect = 1e-54 Identities = 101/134 (75%), Positives = 123/134 (91%) Frame = -3
Query: 643 KTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAK 464 KTTDN+TLR+FCI FTKKR NQ+K+TCYAQ+SQI+QIR+KM EIMV +AQ+CDLK+LV K Sbjct: 128 KTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQK 187
Query: 463 FIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAHKFDLGKLMEVHGDYSEDVGVKVERPA 284 FIPE+IG+EIEKAT+ IYPLQN++IRKVKILKA KFD+GKLMEVHGDYSEDVGVK++RPA Sbjct: 188 FIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPA 247
Query: 283 EDAEPKVEMELVGA 242 E+A P+ E++GA Sbjct: 248 EEAAPEA-TEVIGA 260
>sp|P33444|RS3A_CATRO 40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=3 Length = 260
Score = 207 bits (528), Expect = 3e-53 Identities = 101/134 (75%), Positives = 120/134 (89%) Frame = -3
Query: 643 KTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAK 464 KTTD+YTLR+FCI FTKKR NQ K+TCYAQ+SQIRQIR+KM EIMV +AQSCDLKDLV K Sbjct: 128 KTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQK 187
Query: 463 FIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAHKFDLGKLMEVHGDYSEDVGVKVERPA 284 FIPE+IG+EIEKAT+ IYPLQN++IRKVKILKA KFDLGKLMEVHGDY+ED+G K++RPA Sbjct: 188 FIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPA 247
Query: 283 EDAEPKVEMELVGA 242 E+A + E++GA Sbjct: 248 EEAVAE-PTEVIGA 260
>sp|P49396|RS3A_BRARA 40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2 Length = 262
Score = 202 bits (514), Expect = 1e-51 Identities = 103/136 (75%), Positives = 121/136 (88%), Gaps = 2/136 (1%) Frame = -3
Query: 643 KTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVRE-AQSCDLKDLVA 467 KTTDNYTLRLFCIAFTK+R NQ+K+TCYAQ+SQIRQIR KM EIM++E A SCDLK+LVA Sbjct: 128 KTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVA 187
Query: 466 KFIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAHKFDLGKLMEVHGDY-SEDVGVKVER 290 KFIPE+IGK+IEKAT GIYPLQN++IRKVKILKA KFDL KLMEVHGDY +EDVGVKV+R Sbjct: 188 KFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDR 247
Query: 289 PAEDAEPKVEMELVGA 242 PA++ + E++GA Sbjct: 248 PADEVVEE-PTEIIGA 262
>sp|P49397|RS3A_ORYSJ 40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2 Length = 262
Score = 201 bits (510), Expect = 4e-51 Identities = 94/123 (76%), Positives = 111/123 (90%), Gaps = 1/123 (0%) Frame = -3
Query: 643 KTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAK 464 KTTD Y LRLFCI FTK+RPNQ+K+TCYAQ SQIRQIR+KM+EIM +A SCDLK+LV+K Sbjct: 128 KTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSK 187
Query: 463 FIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAHKFDLGKLMEVHGDYS-EDVGVKVERP 287 FIPE IGKEIEKAT+ I+PLQN+++RKVKILKA KFDLGKLMEVHGDY+ ED+G K++RP Sbjct: 188 FIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRP 247
Query: 286 AED 278 AED Sbjct: 248 AED 250
>sp|Q9XEG7|RS3A_TORRU 40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3 Length = 248
Score = 161 bits (408), Expect = 2e-39 Identities = 84/117 (71%), Positives = 100/117 (85%), Gaps = 1/117 (0%) Frame = -3
Query: 643 KTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAK 464 KTTDNY +R+FCIAFTKKRPN + YAQ+SQI IR+KM EIMV+EAQ+CDLK+LVAK Sbjct: 127 KTTDNYQIRIFCIAFTKKRPNHTRNF-YAQSSQIA-IRRKMREIMVKEAQTCDLKELVAK 184
Query: 463 FIPEAIGKEIEK-ATAGIYPLQNIYIRKVKILKAHKFDLGKLMEVHGDYSEDVGVKV 296 FIPE IGKEI++ + GIYPLQ+ +IRKVKILKA KFDL KLMEVHGDY+E+VG K+ Sbjct: 185 FIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 241
>sp|Q98TX2|RS3A_OPHHA 40S ribosomal protein S3a OS=Ophiophagus hannah GN=RPS3A PE=2 SV=3 Length = 264
Score = 160 bits (405), Expect = 5e-39 Identities = 81/135 (60%), Positives = 102/135 (75%), Gaps = 7/135 (5%) Frame = -3
Query: 643 KTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAK 464 KTTD Y LRLFC+ FTKKR NQI+KT YAQ Q+RQIRKKM+EIM RE Q+ DLK++V K Sbjct: 128 KTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMVEIMTREVQTNDLKEVVNK 187
Query: 463 FIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAHKFDLGKLMEVHGD-------YSEDVG 305 IP++IGK+IEKA IYPL ++Y+RKVK+LK KF+LGKLME+HG+ ++ G Sbjct: 188 LIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETG 247
Query: 304 VKVERPAEDAEPKVE 260 KVER A+ EP V+ Sbjct: 248 AKVER-ADGYEPPVQ 261
>sp|Q642T2|RS3A_XENTR 40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3 Length = 264
Score = 159 bits (402), Expect = 1e-38 Identities = 81/135 (60%), Positives = 102/135 (75%), Gaps = 7/135 (5%) Frame = -3
Query: 643 KTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAK 464 KTTD Y LRLFC+ FTKKR NQI+KT YAQ Q+RQIRKKM+EIM RE Q+ DLK++V K Sbjct: 128 KTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNK 187
Query: 463 FIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAHKFDLGKLMEVHGD-------YSEDVG 305 IP++IGK+IEKA IYPL ++Y+RKVK+LK KF+LGKLME+HG+ ++ G Sbjct: 188 LIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETG 247
Query: 304 VKVERPAEDAEPKVE 260 KVER A+ EP V+ Sbjct: 248 AKVER-ADGYEPPVQ 261
>sp|Q801S3|RS3A_XENLA 40S ribosomal protein S3a OS=Xenopus laevis GN=rps3a PE=2 SV=3 Length = 264
Score = 159 bits (401), Expect = 2e-38 Identities = 81/135 (60%), Positives = 101/135 (74%), Gaps = 7/135 (5%) Frame = -3
Query: 643 KTTDNYTLRLFCIAFTKKRPNQIKKTCYAQTSQIRQIRKKMIEIMVREAQSCDLKDLVAK 464 KTTD Y LRLFC+ FTKKR NQI+KT YAQ Q+RQIRKKM EIM RE Q+ DLK++V K Sbjct: 128 KTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMFEIMTREVQTNDLKEVVNK 187
Query: 463 FIPEAIGKEIEKATAGIYPLQNIYIRKVKILKAHKFDLGKLMEVHGD-------YSEDVG 305 IP++IGK+IEKA IYPL ++Y+RKVK+LK KF+LGKLME+HG+ ++ G Sbjct: 188 LIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETG 247
Query: 304 VKVERPAEDAEPKVE 260 KVER A+ EP V+ Sbjct: 248 AKVER-ADGYEPPVQ 261
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NNV8 |
Definition |
tr|A9NNV8|A9NNV8_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
134 |
Score (bit) |
223.0 |
E-value |
8.0e-57 |
Report |
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