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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961851
Clone id TST39A01NGRL0011_E16
Library
Length 643
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_E16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCTTAAAAGGTCACTATGCCCTCTCATCCTTGCCTGTGACGGGCAAGGGTAGAGGACTCC
ATGGCCTTTCTTCCTCTTCCTGCCGCCCTTTACACATCATCACTGCGAAGGCAGGTCAGA
AGTTGGAGGCGAAGGAACCCAAGCAAACCCCCGAACCCAAGCGAGCATCCAATCCCAGTG
ATGCACCCAAAAACATTACCTTTTCTGCAGAAATAGATGGAAAACAGGTTGAGATAACCC
TCTTGCAAGACGTAGCAGCCAACCAGATGAATCCTCAGAAAGCAGGTATGAAGAAGAAGA
AGAAGAAGAACGGAAACTTGCAGAAGAATGTGGGGGAGGAGCTAGCTGTCCAAGCAGTGA
AAACGACTAGTGCTGACGAGGAGGAAGATGAAGTGGAAGATGCAGATGATGATAAGGATA
GTGATGAGGAAGCGGCAGAGGAAAGCGAGGACCCCAATGAGCAGGAGTCAGACGATGATT
CTGAGCTTGAGGAGGTCATGGAGATGTTCATTCCCCCTGGTGCTGTATTTTCCCCAGAGA
AGCCTTTATCAAAGCTCCCCGGTTCTAATATTTACCTTGGTCCTTATGCAAGAGGTGGTA
GAATAAAGGAGGCAGAGTTTGTTAAGAGCAGCACATGCACAGC
■■Homology search results ■■ -
sp_hit_id O81004
Definition sp|O81004|Y2287_ARATH GTP-binding protein At2g22870 OS=Arabidopsis thaliana
Align length 42
Score (bit) 45.4
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961851|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0011_E16, 5'
         (643 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O81004|Y2287_ARATH GTP-binding protein At2g22870 OS=Arabidops...    45   2e-04
sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE...    31   6.2  

>sp|O81004|Y2287_ARATH GTP-binding protein At2g22870 OS=Arabidopsis
           thaliana GN=EMB2001 PE=2 SV=2
          Length = 300

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 23/42 (54%), Positives = 26/42 (61%)
 Frame = +3

Query: 507 FIPPGAVFSPEKPLSKLPGSNIYLGPYARGGRIKEAEFVKSS 632
           FIPPG           LPGSNI +GP+A   +IKE EFVKSS
Sbjct: 68  FIPPGVEIEELTDDMVLPGSNIVIGPFAGHSQIKEVEFVKSS 109


>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1
            SV=3
          Length = 18141

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 126  EAKEPKQTPEPKRASNPSDAPKNITFSAEIDGKQVEITLLQDVAANQMNPQK 281
            +AK+PK+T E        D P+      EI G+Q EIT  Q    +   P+K
Sbjct: 5869 KAKKPKKTIEKTEIEIEEDQPEEEVLQEEIIGEQEEITERQRKVKSIKKPKK 5920
tr_hit_id A9NMW0
Definition tr|A9NMW0|A9NMW0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 42
Score (bit) 47.4
E-value 0.0008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961851|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0011_E16, 5'
         (643 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NMW0|A9NMW0_PICSI Putative uncharacterized protein OS=Picea...    47   8e-04
tr|A7R1J2|A7R1J2_VITVI Chromosome undetermined scaffold_358, who...    47   0.001
tr|B4FR01|B4FR01_MAIZE GTP-binding protein OS=Zea mays PE=2 SV=1       44   0.006
tr|A7QZC8|A7QZC8_VITVI Chromosome chr7 scaffold_270, whole genom...    42   0.024
tr|Q10PJ0|Q10PJ0_ORYSJ Os03g0232500 protein OS=Oryza sativa subs...    42   0.042
tr|B8AJM6|B8AJM6_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.042
tr|Q8S5X2|Q8S5X2_ORYSJ Putative nucleotide binding protein (Puta...    41   0.071
tr|B4FMS4|B4FMS4_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.12 
tr|B4FAB3|B4FAB3_MAIZE GTP-binding protein OS=Zea mays PE=2 SV=1       40   0.12 
tr|Q5JM78|Q5JM78_ORYSJ cDNA clone:J013111I12, full insert sequen...    39   0.35 
tr|B8A918|B8A918_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.35 
tr|A2ZXJ0|A2ZXJ0_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.35 
tr|Q9LYE2|Q9LYE2_ARATH Putative GTP-binding protein (At5g11480/F...    36   1.7  
tr|Q8LBI3|Q8LBI3_ARATH Putative GTP-binding protein OS=Arabidops...    36   1.7  
tr|Q2L9B8|Q2L9B8_WHEAT Vacuolar ATP synthase subunit E OS=Tritic...    35   3.0  
tr|A7P5C5|A7P5C5_VITVI Chromosome chr4 scaffold_6, whole genome ...    35   3.0  
tr|Q6BY03|Q6BY03_DEBHA DEHA2A13508p OS=Debaryomyces hansenii GN=...    35   3.9  
tr|B7FMQ5|B7FMQ5_MEDTR Putative uncharacterized protein (Fragmen...    35   5.1  
tr|B7FMK2|B7FMK2_MEDTR Putative uncharacterized protein OS=Medic...    35   5.1  
tr|B3L2N6|B3L2N6_PLAKH Putative uncharacterized protein OS=Plasm...    35   5.1  
tr|B1YGP9|B1YGP9_EXIS2 Polysaccharide biosynthesis protein OS=Ex...    35   5.1  
tr|Q8E2L6|Q8E2L6_STRA3 Putative uncharacterized protein gbs2106 ...    34   6.6  
tr|Q8DWR7|Q8DWR7_STRA5 Putative uncharacterized protein OS=Strep...    34   6.6  
tr|Q3JYF8|Q3JYF8_STRA1 Transglycosylase-like domain protein OS=S...    34   6.6  
tr|Q3DS20|Q3DS20_STRAG Immunodominant staphylococcal antigen A O...    34   6.6  
tr|Q3DN24|Q3DN24_STRAG Immunodominant antigen A OS=Streptococcus...    34   6.6  
tr|Q3D824|Q3D824_STRAG Immunodominant antigen A OS=Streptococcus...    34   6.6  
tr|Q3D0C6|Q3D0C6_STRAG Immunodominant antigen A OS=Streptococcus...    34   6.6  

>tr|A9NMW0|A9NMW0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 317

 Score = 47.4 bits (111), Expect = 8e-04
 Identities = 24/42 (57%), Positives = 27/42 (64%)
 Frame = +3

Query: 507 FIPPGAVFSPEKPLSKLPGSNIYLGPYARGGRIKEAEFVKSS 632
           FIPPG      K    LPGSNI +GPYA   +IK+ EFVKSS
Sbjct: 83  FIPPGVERDKIKAEMILPGSNIVVGPYAGDAKIKQVEFVKSS 124


>tr|A7R1J2|A7R1J2_VITVI Chromosome undetermined scaffold_358, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012216001 PE=4 SV=1
          Length = 316

 Score = 47.0 bits (110), Expect = 0.001
 Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
 Frame = +3

Query: 507 FIPPGAVFSPEKPLSK--LPGSNIYLGPYARGGRIKEAEFVKSST 635
           F+PPG    PE+      LPGSNI LGPYA   +IKE EFVKSS+
Sbjct: 84  FVPPGV--DPEEVTDDMVLPGSNIVLGPYAGHAQIKEVEFVKSSS 126


>tr|B4FR01|B4FR01_MAIZE GTP-binding protein OS=Zea mays PE=2 SV=1
          Length = 308

 Score = 44.3 bits (103), Expect = 0.006
 Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 507 FIPPGAVFSPEKPLSK-LPGSNIYLGPYARGGRIKEAEFVKSS 632
           F+PPG       P    +PGSNI +GPYA   R+K AEFVKSS
Sbjct: 72  FLPPGVERDALVPADMVIPGSNIVVGPYAGDARVKGAEFVKSS 114


>tr|A7QZC8|A7QZC8_VITVI Chromosome chr7 scaffold_270, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00010593001
           PE=4 SV=1
          Length = 219

 Score = 42.4 bits (98), Expect = 0.024
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +3

Query: 555 LPGSNIYLGPYARGGRIKEAEFVKSST 635
           LPGSNI LGPYA   +IKE EFVKSS+
Sbjct: 3   LPGSNIVLGPYAGHAQIKEVEFVKSSS 29


>tr|Q10PJ0|Q10PJ0_ORYSJ Os03g0232500 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0232500 PE=2 SV=1
          Length = 318

 Score = 41.6 bits (96), Expect = 0.042
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +3

Query: 507 FIPPG----AVFSPEKPLSKLPGSNIYLGPYARGGRIKEAEFVKSS 632
           F PPG    A  + E  +   P SNI +GPYA   R+KEAEFVKSS
Sbjct: 79  FFPPGVDRDAAVAAEMVI---PASNIVVGPYAGDSRVKEAEFVKSS 121


>tr|B8AJM6|B8AJM6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10639 PE=4 SV=1
          Length = 348

 Score = 41.6 bits (96), Expect = 0.042
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +3

Query: 507 FIPPG----AVFSPEKPLSKLPGSNIYLGPYARGGRIKEAEFVKSS 632
           F PPG    A  + E  +   P SNI +GPYA   R+KEAEFVKSS
Sbjct: 79  FFPPGVDRDAAVAAEMVI---PASNIVVGPYAGDSRVKEAEFVKSS 121


>tr|Q8S5X2|Q8S5X2_ORYSJ Putative nucleotide binding protein
           (Putative uncharacterized protein) OS=Oryza sativa
           subsp. japonica GN=OJ1175C11.16 PE=4 SV=1
          Length = 255

 Score = 40.8 bits (94), Expect = 0.071
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +3

Query: 555 LPGSNIYLGPYARGGRIKEAEFVKSS 632
           +P SNI +GPYA   R+KEAEFVKSS
Sbjct: 3   IPASNIVVGPYAGDSRVKEAEFVKSS 28


>tr|B4FMS4|B4FMS4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 354

 Score = 40.0 bits (92), Expect = 0.12
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
 Frame = +3

Query: 507 FIPPGAVFSP--EKPLSK--LPGSNIYLGPYARG-GRIKEAEFVKSS 632
           F+PPGA      ++ +S   L GSNI LGPYARG  ++  A+FVKSS
Sbjct: 73  FVPPGATMDAGDQEAVSARVLKGSNIVLGPYARGDAQVVNADFVKSS 119


>tr|B4FAB3|B4FAB3_MAIZE GTP-binding protein OS=Zea mays PE=2 SV=1
          Length = 313

 Score = 40.0 bits (92), Expect = 0.12
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
 Frame = +3

Query: 507 FIPPGAVFSP--EKPLSK--LPGSNIYLGPYARG-GRIKEAEFVKSS 632
           F+PPGA      ++ +S   L GSNI LGPYARG  ++  A+FVKSS
Sbjct: 73  FVPPGATMDAGDQEAVSARVLKGSNIVLGPYARGDAQVVNADFVKSS 119


>tr|Q5JM78|Q5JM78_ORYSJ cDNA clone:J013111I12, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OSJNBb0036G09.5 PE=2
           SV=1
          Length = 316

 Score = 38.5 bits (88), Expect = 0.35
 Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
 Frame = +3

Query: 507 FIPPGAVFSP---EKPLSK-LPGSNIYLGPYARG-GRIKEAEFVKSS 632
           F+PPGA  S    E   ++ L GSNI LGPYARG   +  A+FVKSS
Sbjct: 76  FVPPGASVSAGDAEAVTARVLKGSNIVLGPYARGDANVIAADFVKSS 122